Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g083300.3 Solanum lycopersicum HOM05D005429 ORTHO05D006697 6.7e-71 270.8 158 100.0
Sopen03g023050 Solanum pennellii HOM05D005429 ORTHO05D006697 6.7e-71 270.8 158 100.0
PGSC0003DMG400009083 Solanum tuberosum HOM05D005429 ORTHO05D006697 2.0e-70 269.2 158 99.4
Nitab4.5_0009812g0020 Nicotiana tabacum HOM05D005429 ORTHO05D006697 2.3e-63 245.7 136 94.9
Nitab4.5_0000548g0210 Nicotiana tabacum HOM05D005429 ORTHO05D006697 6.7e-63 244.2 136 94.1
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 2.0e-54 216.1 134 88.8
Peaxi162Scf03254g00010 Petunia axillaris HOM05D005429 ORTHO05D006697 1.8e-52 209.5 134 87.3
Cc02_g22920 Coffea canephora HOM05D005429 ORTHO05D006697 9.1e-52 207.2 122 86.9
Dinv42877 Davidia involucrata HOM05D005429 ORTHO05D006697 4.5e-51 204.9 127 84.3
Dinv43223 Davidia involucrata HOM05D005429 ORTHO05D006697 4.5e-51 204.9 127 84.3
Peaxi162Scf00003g03942 Petunia axillaris HOM05D005429 ORTHO05D006697 1.7e-50 203.0 134 85.8
Lj7A456T20 Lonicera japonica HOM05D005429 ORTHO05D006697 2.2e-50 202.6 125 84.0
CSS0004524 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 5.0e-50 201.4 126 82.5
CiPaw.05G164700 Carya illinoinensis HOM05D005429 ORTHO05D006697 5.0e-50 201.4 126 83.3
Rhsim03G0256400 Rhododendron simsii HOM05D005429 ORTHO05D006697 5.0e-50 201.4 125 84.0
Rhsim10G0195600 Rhododendron simsii HOM05D005429 ORTHO05D006697 5.0e-50 201.4 125 84.0
CSS0015948 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 1.9e-49 199.5 125 82.4
CSS0034504 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 1.9e-49 199.5 125 82.4
TAR624G1317 Trochodendron aralioides HOM05D005429 ORTHO05D006697 1.9e-49 199.5 150 81.3
vmacro06089 Vaccinium macrocarpon HOM05D005429 ORTHO05D006697 4.2e-49 198.4 129 80.6
GSVIVG01036692001 Vitis vinifera HOM05D005429 ORTHO05D006697 5.5e-49 198.0 127 80.3
Actinidia23548 Actinidia chinensis HOM05D005429 ORTHO05D006697 9.4e-49 197.2 134 79.9
Aqoxy3G02759 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 9.4e-49 197.2 126 80.2
Dinv44073 Davidia involucrata HOM05D005429 ORTHO05D006697 3.6e-48 195.3 123 82.9
Prupe.7G260300 Prunus persica HOM05D005429 ORTHO05D006697 3.6e-48 195.3 124 83.1
QL11p022585 Quercus lobata HOM05D005429 ORTHO05D006697 6.1e-48 194.5 127 80.3
Ciclev10022715m.g Citrus clementina HOM05D005429 ORTHO05D006697 5.2e-47 191.4 146 76.7
Lsat_1_v5_gn_2_59100 Lactuca sativa HOM05D005429 ORTHO05D006697 5.2e-47 191.4 124 80.6
PGR083G0776 Punica granatum HOM05D005429 ORTHO05D006697 5.2e-47 191.4 127 78.0
MSTRG.26291 Avicennia marina HOM05D005429 ORTHO05D006697 6.8e-47 191.0 124 79.8
DCAR_027354 Daucus carota HOM05D005429 ORTHO05D006697 6.8e-47 191.0 126 81.0
Duzib116G0688 Durio zibethinus HOM05D005429 ORTHO05D006697 8.8e-47 190.7 122 81.1
Gohir.D02G066500 Gossypium hirsutum HOM05D005429 ORTHO05D006697 8.8e-47 190.7 121 81.0
ECA238G3108 Erigeron canadensis HOM05D005429 ORTHO05D006697 2.0e-46 189.5 151 75.5
Migut.N01785 Erythranthe guttata HOM05D005429 ORTHO05D006697 2.0e-46 189.5 124 79.8
Potri.008G080700 Populus trichocarpa HOM05D005429 ORTHO05D006697 2.0e-46 189.5 124 79.0
COL.COLO4_05834 Corchorus olitorius HOM05D005429 ORTHO05D006697 2.6e-46 189.1 119 82.4
Gorai.005G075400 Gossypium raimondii HOM05D005429 ORTHO05D006697 2.6e-46 189.1 121 80.2
LjContig00222g0019384 Lotus japonicus HOM05D005429 ORTHO05D006697 3.4e-46 188.7 151 78.1
Thecc.05G251100 Theobroma cacao HOM05D005429 ORTHO05D006697 3.4e-46 188.7 125 79.2
Eucgr.C03287 Eucalyptus grandis HOM05D005429 ORTHO05D006697 4.4e-46 188.3 122 81.1
ClCG11G011870 Citrullus lanatus HOM05D005429 ORTHO05D006697 5.7e-46 188.0 146 76.0
SGA_v2.0_scaffold147G36309 Striga asiatica HOM05D005429 ORTHO05D006697 5.7e-46 188.0 124 79.0
MELO3C021751.2 Cucumis melo HOM05D005429 ORTHO05D006697 9.8e-46 187.2 145 77.2
Eucgr.C04279 Eucalyptus grandis HOM05D005429 ORTHO05D006697 9.8e-46 187.2 122 81.1
Eucgr.F00079 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.3e-45 186.8 122 80.3
Psat1g130720 Pisum sativum HOM05D005429 ORTHO05D006697 1.3e-45 186.8 123 79.7
Thecc.08G200900 Theobroma cacao HOM05D005429 ORTHO05D006697 1.3e-45 186.8 122 79.5
Ca_03324_v3 Cicer arietinum L. HOM05D005429 ORTHO05D006697 1.7e-45 186.4 124 79.0
Medtr2g062860 Medicago truncatula HOM05D005429 ORTHO05D006697 1.7e-45 186.4 123 80.5
CsaV3_1G046300 Cucumis sativus L. HOM05D005429 ORTHO05D006697 2.2e-45 186.0 145 75.2
Atru.chr3.2997 Acer truncatum HOM05D005429 ORTHO05D006697 3.7e-45 185.3 160 66.9
Cfa010706 Carpinus fangiana HOM05D005429 ORTHO05D006697 3.7e-45 185.3 123 78.0
Gohir.A02G061000 Gossypium hirsutum HOM05D005429 ORTHO05D006697 3.7e-45 185.3 120 80.0
PSO384G3609 Papaver somniferum HOM05D005429 ORTHO05D006697 6.3e-45 184.5 147 76.2
HanXRQChr14g0437971 Helianthus annuus HOM05D005429 ORTHO05D006697 1.4e-44 183.3 125 76.0
TWI18G1141 Tripterygium wilfordii HOM05D005429 ORTHO05D006697 1.4e-44 183.3 124 76.6
Lalb_Chr01g0015641 Lupinus albus HOM05D005429 ORTHO05D006697 1.8e-44 183.0 123 78.0
arahy.Tifrunner.gnm1.ann1.9U3PF1 Arachis hypogaea HOM05D005429 ORTHO05D006697 2.4e-44 182.6 151 76.2
arahy.Tifrunner.gnm1.ann1.WT0EG6 Arachis hypogaea HOM05D005429 ORTHO05D006697 2.4e-44 182.6 151 76.2
PSO832G0230 Papaver somniferum HOM05D005429 ORTHO05D006697 3.1e-44 182.2 147 70.7
THA.LOC104812397 Tarenaya hassleriana HOM05D005429 ORTHO05D006697 3.1e-44 182.2 124 76.6
CARHR016900 Cardamine hirsuta HOM05D005429 ORTHO05D006697 5.4e-44 181.4 122 76.2
PSO210G6955 Papaver somniferum HOM05D005429 ORTHO05D006697 5.4e-44 181.4 147 72.8
Sed0018631 Sechium edule HOM05D005429 ORTHO05D006697 5.4e-44 181.4 122 77.9
unitig_749.g13420 Utricularia gibba HOM05D005429 ORTHO05D006697 5.4e-44 181.4 142 76.8
Glyma.15G204300 Glycine max HOM05D005429 ORTHO05D006697 7.0e-44 181.0 127 75.6
Nn4g23117 Nelumbo nucifera HOM05D005429 ORTHO05D006697 9.1e-44 180.6 124 77.4
AT1G16430 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 1.2e-43 180.3 124 74.2
Cpa.g.sc16.3 Carica papaya HOM05D005429 ORTHO05D006697 1.2e-43 180.3 124 75.0
Glyma.08G160100 Glycine max HOM05D005429 ORTHO05D006697 1.6e-43 179.9 123 78.0
Phvul.005G043700 Phaseolus vulgaris HOM05D005429 ORTHO05D006697 1.6e-43 179.9 121 77.7
AUR62006203 Chenopodium quinoa HOM05D005429 ORTHO05D006697 2.0e-43 179.5 130 72.3
AUR62030412 Chenopodium quinoa HOM05D005429 ORTHO05D006697 2.0e-43 179.5 130 72.3
VMungo1080G0054 Vigna mungo HOM05D005429 ORTHO05D006697 2.0e-43 179.5 121 76.9
Aa31LG7G970 Aethionema arabicum HOM05D005429 ORTHO05D006697 2.7e-43 179.1 122 75.4
CDE02G4404 Ceratophyllum demersum HOM05D005429 ORTHO05D006697 2.7e-43 179.1 124 73.4
AL1G28560 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 3.5e-43 178.7 122 74.6
Sc16g0002320 Simmondsia chinensis HOM05D005429 ORTHO05D006697 3.5e-43 178.7 155 72.3
AL1G18280 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 4.5e-43 178.3 122 74.6
AT1G07950 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 4.5e-43 178.3 122 74.6
Peaxi162Scf00003g04025 Petunia axillaris HOM05D005429 ORTHO05D006697 4.5e-43 178.3 106 92.5
Sp1g14580 Schrenkiella parvula HOM05D005429 ORTHO05D006697 4.5e-43 178.3 122 76.2
RcHm_v2.0_Chr5g0022991 Rosa chinensis HOM05D005429 ORTHO05D006697 5.9e-43 177.9 120 75.0
PSO339G4006 Papaver somniferum HOM05D005429 ORTHO05D006697 7.7e-43 177.6 122 77.0
Sabra08G0060000 Salix brachista HOM05D005429 ORTHO05D006697 1.3e-42 176.8 122 74.6
Carub.0001s0730 Capsella rubella HOM05D005429 ORTHO05D006697 1.7e-42 176.4 122 73.8
TPR.G39484 Trifolium pratense HOM05D005429 ORTHO05D006697 1.7e-42 176.4 123 75.6
EL10Ac5g12584 Beta vulgaris HOM05D005429 ORTHO05D006697 2.2e-42 176.0 142 73.9
BraA06t24400Z Brassica rapa HOM05D005429 ORTHO05D006697 2.2e-42 176.0 124 73.4
BcaC05g25573 Brassica carinata HOM05D005429 ORTHO05D006697 3.8e-42 175.3 122 73.8
C05p14630 Brassica napus HOM05D005429 ORTHO05D006697 3.8e-42 175.3 122 73.8
BolC5t30184H Brassica oleracea HOM05D005429 ORTHO05D006697 3.8e-42 175.3 122 73.8
Manes.03G077300 Manihot esculenta HOM05D005429 ORTHO05D006697 3.8e-42 175.3 122 74.6
SGA_v2.0_scaffold19G08578 Striga asiatica HOM05D005429 ORTHO05D006697 3.8e-42 175.3 116 77.6
BcaB02g06622 Brassica carinata HOM05D005429 ORTHO05D006697 5.0e-42 174.9 122 74.6
CANSAT56G3386 Cannabis sativa HOM05D005429 ORTHO05D006697 6.5e-42 174.5 123 70.7
A06p12360 Brassica napus HOM05D005429 ORTHO05D006697 8.5e-42 174.1 122 73.0
FvH4_3g13800 Fragaria vesca HOM05D005429 ORTHO05D006697 2.5e-41 172.6 120 73.3
FAN11G0784 Fragaria x ananassa HOM05D005429 ORTHO05D006697 2.5e-41 172.6 120 73.3
FAN21G1331 Fragaria x ananassa HOM05D005429 ORTHO05D006697 3.2e-41 172.2 120 73.3
FAN16G2737 Fragaria x ananassa HOM05D005429 ORTHO05D006697 5.5e-41 171.4 120 72.5
FAN25G2434 Fragaria x ananassa HOM05D005429 ORTHO05D006697 1.6e-40 169.9 120 71.7
Hund11041 Selenicereus undatus HOM05D005429 ORTHO05D006697 2.1e-40 169.5 128 70.3
Thhalv10008938m.g Eutrema salsugineum HOM05D005429 ORTHO05D006697 2.7e-40 169.1 131 69.5
HPP92_024623 Vanilla planifolia HOM05D005429 ORTHO05D006697 2.7e-40 169.1 125 69.6
Peaxi162Scf03393g00016 Petunia axillaris HOM05D005429 ORTHO05D006697 4.7e-40 168.3 101 92.1
Os08g0480500 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 8.0e-40 167.5 123 68.3
DCAR_014816 Daucus carota HOM05D005429 ORTHO05D006697 1.4e-39 166.8 143 65.0
Ah.04g163250 Amaranthus hybridus HOM05D005429 ORTHO05D006697 1.8e-39 166.4 151 70.2
Carub.0001s1617 Capsella rubella HOM05D005429 ORTHO05D006697 3.0e-39 165.6 122 71.3
QL02p100061 Quercus lobata HOM05D005429 ORTHO05D006697 2.0e-38 162.9 198 51.5
Hma1.2p1_0817F.1_g223090 Hydrangea macrophylla HOM05D005429 ORTHO05D006697 4.4e-38 161.8 152 73.0
SEGI_11251 Sequoiadendron giganteum HOM05D005429 ORTHO05D006697 4.4e-38 161.8 123 67.5
unitig_26.g9672 Utricularia gibba HOM05D005429 ORTHO05D006697 4.4e-38 161.8 119 69.7
ATR0019G018 Amborella trichopoda HOM05D005429 ORTHO05D006697 4.9e-37 158.3 123 66.7
Haze_03266 Corylus avellana HOM05D005429 ORTHO05D006697 1.4e-36 156.8 97 84.5
QL04p071374 Quercus lobata HOM05D005429 ORTHO05D006697 1.4e-36 156.8 101 83.2
Zm00001eb335330 Zea mays HOM05D005429 ORTHO05D006697 5.4e-36 154.8 129 64.3
Oeu051694.1 Olea europaea HOM05D005429 ORTHO05D006697 1.6e-35 153.3 105 79.0
Haze_03271 Corylus avellana HOM05D005429 ORTHO05D001402 1.7e-34 149.8 98 79.6
MD02G1009700 Malus domestica HOM05D005429 ORTHO05D006697 1.9e-33 146.4 124 63.7
Eucgr.C04273 Eucalyptus grandis HOM05D005429 ORTHO05D006697 3.3e-33 145.6 95 77.9
Mapoly0161s0019 Marchantia polymorpha HOM05D005429 ORTHO05D006697 2.1e-32 142.9 120 60.8
Os01g0132700 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 6.1e-32 141.4 123 58.5
Pp3c24_19620 Physcomitrium patens HOM05D005429 ORTHO05D006697 3.0e-31 139.0 128 57.8
Pp3c20_1390 Physcomitrium patens HOM05D005429 ORTHO05D006697 4.0e-31 138.7 123 58.5
CAN.G1618.6 Capsicum annuum HOM05D005429 ORTHO05D006697 5.7e-30 134.8 93 74.2
CAN.G584.55 Capsicum annuum HOM05D005429 ORTHO05D006697 5.7e-30 134.8 93 74.2
SMO141G0142 Selaginella moellendorffii HOM05D005429 ORTHO05D006697 9.8e-30 134.0 132 56.1
Aqoxy3G02314 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 2.7e-27 125.9 83 79.5
AagrBONN_evm.TU.Sc2ySwM_117.1673 Anthoceros agrestis HOM05D005429 ORTHO05D006697 7.3e-25 117.9 121 50.4
Peaxi162Scf03393g00018 Petunia axillaris HOM05D005429 ORTHO05D006697 2.1e-24 116.3 75 84.0
Oeu050474.1 Olea europaea HOM05D005429 ORTHO05D006697 7.5e-22 107.8 78 71.8
Eucgr.L02967 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.4e-20 103.6 104 59.6
Eucgr.C04269 Eucalyptus grandis HOM05D005429 ORTHO05D006697 3.3e-17 92.4 98 58.2
Peaxi162Scf00003g04026 Petunia axillaris HOM05D000011 ORTHO05D011267 2.8e-16 89.4 57 86.0
Zm00001eb228470 Zea mays HOM05D005429 ORTHO05D006697 4.9e-13 78.6 51 70.6
SGA_v2.0_scaffold19G08607 Striga asiatica HOM05D005429 ORTHO05D006697 8.6e-10 67.8 83 55.4
SGA_v2.0_scaffold19G08613 Striga asiatica HOM05D005429 ORTHO05D006697 8.6e-10 67.8 70 61.4
SGA_v2.0_scaffold711G53500 Striga asiatica HOM05D005429 ORTHO05D006697 8.6e-10 67.8 83 55.4


User provided reference genes

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