Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g082650.1 Solanum lycopersicum HOM05D002008 ORTHO05D002054 1.2e-32 142.5 66 100.0
Solyc01g110410.3 Solanum lycopersicum HOM05D002008 ORTHO05D002054 1.7e-07 58.9 34 76.5
Sopen01g052560 Solanum pennellii HOM05D002008 ORTHO05D002054 1.7e-07 58.9 34 76.5
PGSC0003DMG402005570 Solanum tuberosum HOM05D002008 ORTHO05D002054 2.9e-07 58.2 34 76.5
Nitab4.5_0005266g0070 Nicotiana tabacum HOM05D002008 ORTHO05D002054 8.3e-07 56.6 34 76.5
Nitab4.5_0005932g0020 Nicotiana tabacum HOM05D002008 ORTHO05D002054 8.3e-07 56.6 34 76.5
Aa31LG6G16310 Aethionema arabicum HOM05D002008 ORTHO05D002054 1.9e-06 55.5 34 76.5
CAN.G170.102 Capsicum annuum HOM05D002008 ORTHO05D002054 1.9e-06 55.5 34 73.5
CAN.G170.103 Capsicum annuum HOM05D002008 ORTHO05D002054 1.9e-06 55.5 34 73.5
Peaxi162Scf00016g00033 Petunia axillaris HOM05D002008 ORTHO05D002054 3.2e-06 54.7 34 73.5
Sp7g36910 Schrenkiella parvula HOM05D002008 ORTHO05D002054 3.2e-06 54.7 51 54.9
THA.LOC104804111 Tarenaya hassleriana HOM05D002008 ORTHO05D002054 3.2e-06 54.7 34 73.5
THA.LOC104824790 Tarenaya hassleriana HOM05D002008 ORTHO05D002054 3.2e-06 54.7 34 73.5
PGSC0003DMG401005570 Solanum tuberosum HOM05D002008 ORTHO05D002054 4.1e-06 54.3 34 73.5
Prupe.8G083000 Prunus persica HOM05D002008 ORTHO05D002054 5.4e-06 53.9 50 52.0
Actinidia00575 Actinidia chinensis HOM05D002008 ORTHO05D002054 7.0e-06 53.5 34 70.6
Aa31LG7G15220 Aethionema arabicum HOM05D002008 ORTHO05D002054 7.0e-06 53.5 34 70.6
AL4G10410 Arabidopsis lyrata HOM05D002008 ORTHO05D002054 7.0e-06 53.5 34 70.6
AT2G21270 Arabidopsis thaliana HOM05D002008 ORTHO05D002054 7.0e-06 53.5 34 70.6
BcaB08g34978 Brassica carinata HOM05D002008 ORTHO05D002054 7.0e-06 53.5 34 70.6
BcaC02g08803 Brassica carinata HOM05D002008 ORTHO05D002054 7.0e-06 53.5 34 70.6
BcaC07g41160 Brassica carinata HOM05D002008 ORTHO05D002054 7.0e-06 53.5 34 70.6
A04p16050 Brassica napus HOM05D002008 ORTHO05D002054 7.0e-06 53.5 34 70.6
A09p58340 Brassica napus HOM05D002008 ORTHO05D002054 7.0e-06 53.5 34 70.6
C04p50510 Brassica napus HOM05D002008 ORTHO05D002054 7.0e-06 53.5 34 70.6
C08p41680 Brassica napus HOM05D002008 ORTHO05D002054 7.0e-06 53.5 34 70.6
BolC4t26649H Brassica oleracea HOM05D002008 ORTHO05D002054 7.0e-06 53.5 34 70.6
BolC8t51731H Brassica oleracea HOM05D002008 ORTHO05D002054 7.0e-06 53.5 34 70.6
BraA04t17245Z Brassica rapa HOM05D002008 ORTHO05D002054 7.0e-06 53.5 34 70.6
BraA09t41225Z Brassica rapa HOM05D002008 ORTHO05D002054 7.0e-06 53.5 34 70.6
CSS0024848 Camellia sinensis var. sinensis HOM05D002008 ORTHO05D002054 7.0e-06 53.5 34 70.6
CSS0025845 Camellia sinensis var. sinensis HOM05D002008 ORTHO05D002054 7.0e-06 53.5 34 70.6
Carub.0004s0031 Capsella rubella HOM05D002008 ORTHO05D002054 7.0e-06 53.5 34 70.6
CARHR112140 Cardamine hirsuta HOM05D002008 ORTHO05D002054 7.0e-06 53.5 34 70.6
Cpa.g.sc150.14 Carica papaya HOM05D002008 ORTHO05D002054 7.0e-06 53.5 34 70.6
Ciclev10028844m.g Citrus clementina HOM05D002008 ORTHO05D002054 7.0e-06 53.5 34 70.6
Cc02_g16870 Coffea canephora HOM05D002008 ORTHO05D002054 7.0e-06 53.5 34 70.6
Duzib132G1117 Durio zibethinus HOM05D002008 ORTHO05D002054 7.0e-06 53.5 34 70.6
Duzib248G1510 Durio zibethinus HOM05D002008 ORTHO05D002054 7.0e-06 53.5 34 70.6
Thhalv10000246m.g Eutrema salsugineum HOM05D002008 ORTHO05D002054 7.0e-06 53.5 34 70.6
Gohir.A04G123700 Gossypium hirsutum HOM05D002008 ORTHO05D002054 7.0e-06 53.5 34 70.6
Gohir.A12G040900 Gossypium hirsutum HOM05D002008 ORTHO05D002054 7.0e-06 53.5 34 70.6
Gohir.D04G165800 Gossypium hirsutum HOM05D002008 ORTHO05D002054 7.0e-06 53.5 34 70.6
Gohir.D12G031500 Gossypium hirsutum HOM05D002008 ORTHO05D002054 7.0e-06 53.5 34 70.6
Gorai.008G032200 Gossypium raimondii HOM05D002008 ORTHO05D002054 7.0e-06 53.5 34 70.6
Gorai.012G154200 Gossypium raimondii HOM05D002008 ORTHO05D002054 7.0e-06 53.5 34 70.6
HanXRQChr10g0294171 Helianthus annuus HOM05D002008 ORTHO05D002054 7.0e-06 53.5 34 70.6
Lsat_1_v5_gn_4_67401 Lactuca sativa HOM05D002008 ORTHO05D002054 7.0e-06 53.5 34 70.6
Lj9A383G60 Lonicera japonica HOM05D002008 ORTHO05D002054 7.0e-06 53.5 34 70.6
Manes.10G063400 Manihot esculenta HOM05D002008 ORTHO05D002054 7.0e-06 53.5 34 70.6
Potri.004G163200 Populus trichocarpa HOM05D002008 ORTHO05D002054 7.0e-06 53.5 34 70.6
Sabra04G0109500 Salix brachista HOM05D002008 ORTHO05D002054 7.0e-06 53.5 34 70.6
Sp4g00460 Schrenkiella parvula HOM05D002008 ORTHO05D002054 7.0e-06 53.5 34 70.6
Thecc.02G074700 Theobroma cacao HOM05D002008 ORTHO05D002054 7.0e-06 53.5 34 70.6
TWI75G0289 Tripterygium wilfordii HOM05D002008 ORTHO05D002054 7.0e-06 53.5 34 70.6
TWI79G0712 Tripterygium wilfordii HOM05D002008 ORTHO05D002054 7.0e-06 53.5 34 70.6
ClCG11G003840 Citrullus lanatus HOM05D002008 ORTHO05D002054 9.2e-06 53.1 34 70.6
MELO3C023358.2 Cucumis melo HOM05D002008 ORTHO05D002054 9.2e-06 53.1 34 70.6
CsaV3_2G015300 Cucumis sativus L. HOM05D002008 ORTHO05D002054 9.2e-06 53.1 34 70.6
FvH4_2g10540 Fragaria vesca HOM05D002008 ORTHO05D002054 9.2e-06 53.1 34 70.6
FAN15G2816 Fragaria x ananassa HOM05D002008 ORTHO05D002054 9.2e-06 53.1 34 70.6
FAN24G0842 Fragaria x ananassa HOM05D002008 ORTHO05D002054 9.2e-06 53.1 34 70.6
FAN27G0482 Fragaria x ananassa HOM05D002008 ORTHO05D002054 9.2e-06 53.1 34 70.6
Lalb_Chr05g0222221 Lupinus albus HOM05D002008 ORTHO05D002054 9.2e-06 53.1 34 70.6
Medtr8g105250 Medicago truncatula HOM05D002008 ORTHO05D002054 9.2e-06 53.1 34 70.6
RcHm_v2.0_Chr6g0268171 Rosa chinensis HOM05D002008 ORTHO05D002054 9.2e-06 53.1 34 67.6
Sed0009657 Sechium edule HOM05D002008 ORTHO05D002054 9.2e-06 53.1 34 70.6


User provided reference genes

Program Settings