Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g062810.1 Solanum lycopersicum HOM05D002077 ORTHO05D000818 1.5e-46 189.1 91 100.0
PGSC0003DMG401014331 Solanum tuberosum HOM05D002077 ORTHO05D000818 1.2e-32 142.9 83 78.3
Sopen03g004750 Solanum pennellii HOM05D002077 ORTHO05D000818 9.6e-30 133.3 83 72.3
Solyc03g025930.4 Solanum lycopersicum HOM05D002077 ORTHO05D000818 4.8e-29 131.0 83 71.1
PGSC0003DMG402014331 Solanum tuberosum HOM05D002077 ORTHO05D000818 4.5e-27 124.4 83 68.7
PGSC0003DMG400014329 Solanum tuberosum HOM05D002077 ORTHO05D000818 4.3e-22 107.8 83 59.0
Solyc03g025940.3 Solanum lycopersicum HOM05D002077 ORTHO05D000818 5.7e-22 107.5 83 57.8
Phvul.007G069000 Phaseolus vulgaris HOM05D002077 ORTHO05D000818 2.2e-21 105.5 83 54.2
arahy.Tifrunner.gnm1.ann1.6H6H67 Arachis hypogaea HOM05D002077 ORTHO05D000818 6.3e-21 104.0 83 55.4
arahy.Tifrunner.gnm1.ann1.KCRD8X Arachis hypogaea HOM05D002077 ORTHO05D000818 6.3e-21 104.0 83 55.4
TPR.G14327 Trifolium pratense HOM05D002077 ORTHO05D000818 8.2e-21 103.6 83 55.4
Peaxi162Scf00915g00025 Petunia axillaris HOM05D002077 ORTHO05D000818 1.1e-20 103.2 83 56.6
Solyc03g025920.4 Solanum lycopersicum HOM05D002077 ORTHO05D000818 1.1e-20 103.2 87 57.5
Sopen03g004730 Solanum pennellii HOM05D002077 ORTHO05D000818 1.1e-20 103.2 87 57.5
PGSC0003DMG403014333 Solanum tuberosum HOM05D002077 ORTHO05D000818 1.1e-20 103.2 87 57.5
COL.COLO4_14296 Corchorus olitorius HOM05D002077 ORTHO05D000818 1.4e-20 102.8 83 53.0
Glyma.20G157500 Glycine max HOM05D002077 ORTHO05D000818 1.4e-20 102.8 83 54.2
Atru.chr1.476 Acer truncatum HOM05D002077 ORTHO05D000818 1.8e-20 102.4 83 55.4
Prupe.2G293200 Prunus persica HOM05D002077 ORTHO05D000818 2.4e-20 102.1 83 54.2
Nitab4.5_0000716g0180 Nicotiana tabacum HOM05D002077 ORTHO05D000818 4.1e-20 101.3 83 55.4
Sopen03g004760 Solanum pennellii HOM05D002077 ORTHO05D000818 4.1e-20 101.3 83 54.2
PGSC0003DMG400030222 Solanum tuberosum HOM05D002077 ORTHO05D000818 4.1e-20 101.3 83 54.2
PGSC0003DMG400043692 Solanum tuberosum HOM05D002077 ORTHO05D000818 4.1e-20 101.3 83 56.6
VMungo0720G0161 Vigna mungo HOM05D002077 ORTHO05D000818 4.1e-20 101.3 84 54.8
TWI14G1216 Tripterygium wilfordii HOM05D002077 ORTHO05D000818 6.9e-20 100.5 83 55.4
Actinidia34102 Actinidia chinensis HOM05D002077 ORTHO05D000818 1.2e-19 99.8 83 55.4
Lalb_Chr06g0161071 Lupinus albus HOM05D002077 ORTHO05D000818 1.2e-19 99.8 83 53.0
PGSC0003DMG400016751 Solanum tuberosum HOM05D002077 ORTHO05D000818 1.2e-19 99.8 82 59.8
Medtr1g100697 Medicago truncatula HOM05D002077 ORTHO05D000818 1.5e-19 99.4 83 53.0
Nitab4.5_0003365g0050 Nicotiana tabacum HOM05D002077 ORTHO05D000818 2.0e-19 99.0 83 54.2
CAN.G913.3 Capsicum annuum HOM05D002077 ORTHO05D000818 2.6e-19 98.6 87 52.9
Manes.06G146400 Manihot esculenta HOM05D002077 ORTHO05D000818 2.6e-19 98.6 83 54.2
RcHm_v2.0_Chr1g0377111 Rosa chinensis HOM05D002077 ORTHO05D000818 2.6e-19 98.6 83 53.0
Dinv28453 Davidia involucrata HOM05D002077 ORTHO05D000818 3.4e-19 98.2 75 58.7
Gohir.A09G041000 Gossypium hirsutum HOM05D002077 ORTHO05D000818 3.4e-19 98.2 83 50.6
PGSC0003DMG401014333 Solanum tuberosum HOM05D002077 ORTHO05D000818 3.4e-19 98.2 83 56.6
Ca_10779_v3 Cicer arietinum L. HOM05D002077 ORTHO05D000818 4.5e-19 97.8 83 51.8
Gohir.D09G041900 Gossypium hirsutum HOM05D002077 ORTHO05D000818 4.5e-19 97.8 83 50.6
Gorai.006G048100 Gossypium raimondii HOM05D002077 ORTHO05D000818 4.5e-19 97.8 83 50.6
Thecc.03G175300 Theobroma cacao HOM05D002077 ORTHO05D000818 4.5e-19 97.8 83 49.4
Cpa.g.sc107.40 Carica papaya HOM05D002077 ORTHO05D000818 5.9e-19 97.4 83 54.2
Glyma.10G236900 Glycine max HOM05D002077 ORTHO05D000818 5.9e-19 97.4 83 54.2
Rhsim03G0179600 Rhododendron simsii HOM05D002077 ORTHO05D000818 5.9e-19 97.4 90 51.1
FAN01G1848 Fragaria x ananassa HOM05D002077 ORTHO05D000818 1.0e-18 96.7 83 53.0
Lj5g0027705 Lotus japonicus HOM05D002077 ORTHO05D000818 1.0e-18 96.7 83 49.4
Eucgr.A02798 Eucalyptus grandis HOM05D002077 ORTHO05D000818 1.3e-18 96.3 90 47.8
Ciclev10005501m.g Citrus clementina HOM05D002077 ORTHO05D000818 1.7e-18 95.9 83 53.0
Cfa008309 Carpinus fangiana HOM05D002077 ORTHO05D000818 2.2e-18 95.5 83 54.2
Cc02_g03120 Coffea canephora HOM05D002077 ORTHO05D000818 2.2e-18 95.5 83 53.0
FvH4_7g29350 Fragaria vesca HOM05D002077 ORTHO05D000818 2.2e-18 95.5 83 51.8
FAN06G1288 Fragaria x ananassa HOM05D002077 ORTHO05D006729 2.2e-18 95.5 83 51.8
FAN06G1718 Fragaria x ananassa HOM05D002077 ORTHO05D006729 2.2e-18 95.5 83 51.8
FAN03G1828 Fragaria x ananassa HOM05D002077 ORTHO05D006729 2.9e-18 95.1 83 51.8
Hma1.2p1_2482F.1_g323020 Hydrangea macrophylla HOM05D002077 ORTHO05D000818 3.8e-18 94.7 83 50.6
Hma1.2p1_3140F.1_g333050 Hydrangea macrophylla HOM05D002077 ORTHO05D000818 3.8e-18 94.7 83 49.4
Haze_13726 Corylus avellana HOM05D002077 ORTHO05D000818 5.0e-18 94.4 83 53.0
Psat6g199880 Pisum sativum HOM05D002077 ORTHO05D000818 5.0e-18 94.4 83 49.4
Medtr1g100707 Medicago truncatula HOM05D002077 ORTHO05D000818 1.1e-17 93.2 83 49.4
TAR636G1697 Trochodendron aralioides HOM05D002077 ORTHO05D000818 1.1e-17 93.2 83 44.6
THA.LOC104824394 Tarenaya hassleriana HOM05D002077 ORTHO05D000818 1.4e-17 92.8 82 46.3
Aa31LG4G17390 Aethionema arabicum HOM05D002077 ORTHO05D000818 1.9e-17 92.4 79 48.1
ECA238G3926 Erigeron canadensis HOM05D002077 ORTHO05D000818 1.9e-17 92.4 75 50.7
Lj8A25T67 Lonicera japonica HOM05D002077 ORTHO05D000818 1.9e-17 92.4 83 49.4
MBI18_g44743_MAGBIO Magnolia biondii HOM05D002077 ORTHO05D000818 2.5e-17 92.0 83 51.8
QL09p014520 Quercus lobata HOM05D002077 ORTHO05D000818 2.5e-17 92.0 75 53.3
CiPaw.03G105400 Carya illinoinensis HOM05D002077 ORTHO05D000818 3.2e-17 91.7 83 50.6
GSVIVG01010544001 Vitis vinifera HOM05D002077 ORTHO05D000818 3.2e-17 91.7 83 48.2
AL5G28390 Arabidopsis lyrata HOM05D002077 ORTHO05D000818 5.5e-17 90.9 82 47.6
Carub.0005s1505 Capsella rubella HOM05D002077 ORTHO05D000818 5.5e-17 90.9 82 47.6
Thhalv10010519m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 5.5e-17 90.9 82 47.6
Dinv35206 Davidia involucrata HOM05D002077 ORTHO05D000818 7.2e-17 90.5 83 50.6
ECA232G3548 Erigeron canadensis HOM05D002077 ORTHO05D000818 7.2e-17 90.5 83 48.2
vmacro06694 Vaccinium macrocarpon HOM05D002077 ORTHO05D000818 7.2e-17 90.5 90 48.9
AT3G48880 Arabidopsis thaliana HOM05D002077 ORTHO05D000818 9.3e-17 90.1 82 46.3
Lsat_1_v5_gn_2_131821 Lactuca sativa HOM05D002077 ORTHO05D000818 1.6e-16 89.4 74 52.7
HanXRQChr15g0495591 Helianthus annuus HOM05D002077 ORTHO05D000818 2.7e-16 88.6 83 47.0
CARHR157690 Cardamine hirsuta HOM05D002077 ORTHO05D000818 6.1e-16 87.4 82 45.1
DCAR_009358 Daucus carota HOM05D002077 ORTHO05D000818 6.1e-16 87.4 83 45.8
Nn1g01424 Nelumbo nucifera HOM05D002077 ORTHO05D000818 6.1e-16 87.4 83 44.6
SalBow2G3420 Salvia bowleyana HOM05D002077 ORTHO05D000818 6.1e-16 87.4 81 45.7
Sp5g13170 Schrenkiella parvula HOM05D002077 ORTHO05D000818 6.1e-16 87.4 82 45.1
PSO063G0361 Papaver somniferum HOM05D002077 ORTHO05D000818 1.0e-15 86.7 81 43.2
PSO782G4919 Papaver somniferum HOM05D002077 ORTHO05D000818 1.0e-15 86.7 81 43.2
SGA_v2.0_scaffold10G05344 Striga asiatica HOM05D002077 ORTHO05D000818 1.0e-15 86.7 73 47.9
Duzib205G0590 Durio zibethinus HOM05D002077 ORTHO05D000818 1.8e-15 85.9 75 46.7
HanXRQChr07g0207061 Helianthus annuus HOM05D002077 ORTHO05D000818 1.8e-15 85.9 79 44.3
Eucgr.A02799 Eucalyptus grandis HOM05D002077 ORTHO05D000818 2.3e-15 85.5 90 43.3
Oeu021781.1 Olea europaea HOM05D002077 ORTHO05D000818 3.9e-15 84.7 89 46.1
Sabra15G0150400 Salix brachista HOM05D002077 ORTHO05D000818 3.9e-15 84.7 83 45.8
BcaC09g49912 Brassica carinata HOM05D002077 ORTHO05D000818 5.1e-15 84.3 74 47.3
A01p25170 Brassica napus HOM05D002077 ORTHO05D000818 5.1e-15 84.3 74 47.3
C01p31370 Brassica napus HOM05D002077 ORTHO05D000818 5.1e-15 84.3 74 47.3
BolC1t03074H Brassica oleracea HOM05D002077 ORTHO05D000818 5.1e-15 84.3 74 47.3
BraA01t02425Z Brassica rapa HOM05D002077 ORTHO05D000818 5.1e-15 84.3 74 47.3
BcaB05g22980 Brassica carinata HOM05D002077 ORTHO05D000818 8.8e-15 83.6 74 47.3
Potri.012G137700 Populus trichocarpa HOM05D002077 ORTHO05D000818 1.9e-14 82.4 83 44.6
Potri.015G139700 Populus trichocarpa HOM05D002077 ORTHO05D000818 1.9e-14 82.4 75 48.0
Solyc06g009250.2 Solanum lycopersicum HOM05D002077 ORTHO05D000818 2.5e-14 82.0 60 63.3
CSS0043143 Camellia sinensis var. sinensis HOM05D002077 ORTHO05D000818 3.3e-14 81.6 83 45.8
Hma1.2p1_2094F.1_g313920 Hydrangea macrophylla HOM05D002077 ORTHO05D000818 3.3e-14 81.6 71 49.3
Migut.F01126 Erythranthe guttata HOM05D002077 ORTHO05D000818 4.3e-14 81.3 81 40.7
BcaC07g39363 Brassica carinata HOM05D002077 ORTHO05D000818 5.7e-14 80.9 82 45.1
Aa31LG11G3080 Aethionema arabicum HOM05D002077 ORTHO05D000818 7.4e-14 80.5 77 45.5
C08p23850 Brassica napus HOM05D002077 ORTHO05D000818 3.7e-13 78.2 82 43.9
CAN.G913.4 Capsicum annuum HOM05D000541 ORTHO05D000818 4.8e-13 77.8 70 50.0
MD01G1199600 Malus domestica HOM05D002077 ORTHO05D000818 8.2e-13 77.0 84 45.2
BolC8t50011H Brassica oleracea HOM05D002077 ORTHO05D000818 1.8e-12 75.9 82 42.7
A06p18870 Brassica napus HOM05D002077 ORTHO05D000818 9.1e-12 73.6 82 41.5
Thhalv10005418m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 9.1e-12 73.6 74 43.2
Thhalv10016006m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 9.1e-12 73.6 81 42.0
Aqoxy5G03957 Aquilegia oxysepala HOM05D002077 ORTHO05D000818 1.5e-11 72.8 81 34.6
Sp2g23500 Schrenkiella parvula HOM05D002077 ORTHO05D000818 5.9e-11 70.9 84 40.5
Zm00001eb044180 Zea mays HOM05D002077 ORTHO05D000818 5.9e-11 70.9 75 41.3
Os10g0502900 Oryza sativa ssp. japonica HOM05D002077 ORTHO05D000818 1.3e-10 69.7 75 40.0
RcHm_v2.0_Chr1g0377091 Rosa chinensis HOM05D002077 ORTHO05D000818 3.8e-10 68.2 91 46.2
Thhalv10015761m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 2.5e-09 65.5 65 40.0
FvH4_7g29340 Fragaria vesca HOM05D002077 ORTHO05D000818 2.5e-09 65.5 91 44.0
FAN10G4305 Fragaria x ananassa HOM05D002077 ORTHO05D000818 1.2e-08 63.2 91 44.0
QL12p002854 Quercus lobata HOM05D002077 ORTHO05D000818 1.6e-08 62.8 90 32.2
BcaB01g00773 Brassica carinata HOM05D002077 ORTHO05D000818 2.1e-08 62.4 82 37.8
FAN03G0915 Fragaria x ananassa HOM05D002077 ORTHO05D000818 2.1e-08 62.4 91 42.9
CAN.G1154.4 Capsicum annuum HOM05D002077 ORTHO05D000818 2.7e-08 62.0 53 47.2
Solyc03g096620.3 Solanum lycopersicum HOM05D002077 ORTHO05D000818 2.7e-08 62.0 100 35.0
Thhalv10015508m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 4.7e-08 61.2 76 35.5
Thhalv10015605m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 1.4e-07 59.7 73 37.0
Solyc03g026410.3 Solanum lycopersicum HOM05D002077 ORTHO05D000818 1.4e-07 59.7 162 30.2
Prupe.2G293100 Prunus persica HOM05D002077 ORTHO05D000818 1.8e-07 59.3 87 40.2
CSS0014052 Camellia sinensis var. sinensis HOM05D002077 ORTHO05D000818 3.9e-07 58.2 68 35.3
QL09p041417 Quercus lobata HOM05D002077 ORTHO05D000818 6.7e-07 57.4 79 35.4
RcHm_v2.0_Chr1g0377061 Rosa chinensis HOM05D002077 ORTHO05D000818 6.7e-07 57.4 91 36.3
Aqoxy7G01053 Aquilegia oxysepala HOM05D002077 ORTHO05D000818 5.7e-06 54.3 84 34.5
MD07G1267400 Malus domestica HOM05D002077 ORTHO05D000818 9.7e-06 53.5 87 37.9


User provided reference genes

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