Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g059395.1 Solanum lycopersicum HOM05D004931 ORTHO05D006579 1.9e-62 242.3 119 100.0
PGSC0003DMG401006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 4.2e-25 118.2 92 68.5
Solyc04g045480.3 Solanum lycopersicum HOM05D004931 ORTHO05D006579 4.5e-19 98.2 74 67.6
Sopen04g017340 Solanum pennellii HOM05D004931 ORTHO05D006579 4.5e-19 98.2 74 67.6
CAN.G465.9 Capsicum annuum HOM05D004931 ORTHO05D006579 7.9e-16 87.4 51 80.4
Sopen03g014100 Solanum pennellii HOM05D004931 ORTHO05D006579 8.8e-15 84.0 40 95.0
CiPaw.05G101400 Carya illinoinensis HOM05D004931 ORTHO05D006579 1.5e-14 83.2 51 70.6
HanXRQChr17g0559151 Helianthus annuus HOM05D004931 ORTHO05D006579 2.0e-14 82.8 51 70.6
Cpa.g.sc38.82 Carica papaya HOM05D004931 ORTHO05D006579 2.5e-14 82.4 74 58.1
Duzib248G0794 Durio zibethinus HOM05D004931 ORTHO05D006579 2.5e-14 82.4 74 56.8
MD00G1177400 Malus domestica HOM05D004931 ORTHO05D006579 2.5e-14 82.4 51 72.5
Prupe.1G215300 Prunus persica HOM05D004931 ORTHO05D006579 2.5e-14 82.4 51 72.5
Cfa009447 Carpinus fangiana HOM05D004931 ORTHO05D006579 4.3e-14 81.6 51 70.6
Haze_12500 Corylus avellana HOM05D004931 ORTHO05D006579 4.3e-14 81.6 51 70.6
RcHm_v2.0_Chr4g0428911 Rosa chinensis HOM05D004931 ORTHO05D006579 5.7e-14 81.3 51 72.5
Thecc.02G192700 Theobroma cacao HOM05D004931 ORTHO05D006579 5.7e-14 81.3 51 70.6
COL.COLO4_21767 Corchorus olitorius HOM05D004931 ORTHO05D006579 7.4e-14 80.9 51 72.5
MD13G1130400 Malus domestica HOM05D004931 ORTHO05D006579 7.4e-14 80.9 51 70.6
AUR62005713 Chenopodium quinoa HOM05D004931 ORTHO05D006579 9.7e-14 80.5 51 70.6
AUR62028841 Chenopodium quinoa HOM05D004931 ORTHO05D006579 9.7e-14 80.5 51 70.6
FAN17G1056 Fragaria x ananassa HOM05D004931 ORTHO05D006579 1.3e-13 80.1 51 70.6
PSO017G2176 Papaver somniferum HOM05D004931 ORTHO05D006579 1.3e-13 80.1 51 74.5
PSO478G0594 Papaver somniferum HOM05D004931 ORTHO05D006579 1.3e-13 80.1 51 74.5
RcHm_v2.0_Chr7g0205601 Rosa chinensis HOM05D004931 ORTHO05D006579 1.3e-13 80.1 51 70.6
Aqoxy5G03136 Aquilegia oxysepala HOM05D004931 ORTHO05D006579 1.7e-13 79.7 51 70.6
Dinv06619 Davidia involucrata HOM05D004931 ORTHO05D006579 1.7e-13 79.7 51 70.6
FvH4_4g22670 Fragaria vesca HOM05D004931 ORTHO05D006579 1.7e-13 79.7 51 70.6
FAN07G1868 Fragaria x ananassa HOM05D004931 ORTHO05D006579 1.7e-13 79.7 51 70.6
FAN12G1488 Fragaria x ananassa HOM05D004931 ORTHO05D006579 1.7e-13 79.7 51 70.6
Lj6A838G27 Lonicera japonica HOM05D004931 ORTHO05D006579 1.7e-13 79.7 51 70.6
Potri.003G162600 Populus trichocarpa HOM05D004931 ORTHO05D006579 2.2e-13 79.3 51 70.6
Actinidia34703 Actinidia chinensis HOM05D004931 ORTHO05D006579 2.8e-13 79.0 51 70.6
Sc14g0009240 Simmondsia chinensis HOM05D004931 ORTHO05D006579 2.8e-13 79.0 54 63.0
CANSAT01G2308 Cannabis sativa HOM05D004931 ORTHO05D006579 3.7e-13 78.6 51 68.6
Dinv02758 Davidia involucrata HOM05D004931 ORTHO05D006579 3.7e-13 78.6 51 68.6
Lsat_1_v5_gn_2_17061 Lactuca sativa HOM05D004931 ORTHO05D006579 3.7e-13 78.6 51 70.6
CDE05G1203 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 4.8e-13 78.2 54 64.8
CDE05G3195 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 4.8e-13 78.2 51 66.7
Nitab4.5_0001408g0040 Nicotiana tabacum HOM05D004931 ORTHO05D006579 4.8e-13 78.2 61 65.6
QL03p049374 Quercus lobata HOM05D004931 ORTHO05D006579 4.8e-13 78.2 51 68.6
ClCG07G011910 Citrullus lanatus HOM05D004931 ORTHO05D006579 6.3e-13 77.8 74 52.7
Potri.001G067400 Populus trichocarpa HOM05D004931 ORTHO05D006579 6.3e-13 77.8 51 68.6
SGA_v2.0_scaffold81G25976 Striga asiatica HOM05D004931 ORTHO05D006579 6.3e-13 77.8 51 68.6
TAR374G0634 Trochodendron aralioides HOM05D004931 ORTHO05D006579 6.3e-13 77.8 51 70.6
TAR622G0753 Trochodendron aralioides HOM05D004931 ORTHO05D006579 6.3e-13 77.8 51 68.6
Atru.chr12.1413 Acer truncatum HOM05D004931 ORTHO05D006579 8.2e-13 77.4 51 68.6
CSS0024647 Camellia sinensis var. sinensis HOM05D004931 ORTHO05D006579 8.2e-13 77.4 51 68.6
MELO3C017814.2 Cucumis melo HOM05D004931 ORTHO05D006579 8.2e-13 77.4 74 52.7
CsaV3_4G002250 Cucumis sativus L. HOM05D004931 ORTHO05D006579 8.2e-13 77.4 74 52.7
Gohir.A03G152300 Gossypium hirsutum HOM05D004931 ORTHO05D006579 8.2e-13 77.4 51 68.6
Gohir.D02G175400 Gossypium hirsutum HOM05D004931 ORTHO05D006579 8.2e-13 77.4 51 68.6
Gorai.005G197000 Gossypium raimondii HOM05D004931 ORTHO05D006579 8.2e-13 77.4 51 68.6
Nn3g16276 Nelumbo nucifera HOM05D004931 ORTHO05D006579 8.2e-13 77.4 51 70.6
THA.LOC104814207 Tarenaya hassleriana HOM05D004931 ORTHO05D006579 8.2e-13 77.4 51 66.7
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 1.1e-12 77.0 51 66.7
Cc11_g15020 Coffea canephora HOM05D004931 ORTHO05D006579 1.1e-12 77.0 51 62.7
Manes.08G101500 Manihot esculenta HOM05D004931 ORTHO05D006579 1.1e-12 77.0 51 68.6
AL1G41640 Arabidopsis lyrata HOM05D004931 ORTHO05D006579 1.4e-12 76.6 51 66.7
AT1G28120 Arabidopsis thaliana HOM05D004931 ORTHO05D006579 1.4e-12 76.6 51 66.7
EL10Ac6g13609 Beta vulgaris HOM05D004931 ORTHO05D006579 1.4e-12 76.6 54 63.0
BcaB03g12136 Brassica carinata HOM05D004931 ORTHO05D006579 1.4e-12 76.6 51 66.7
BcaB03g13953 Brassica carinata HOM05D004931 ORTHO05D006579 1.4e-12 76.6 51 68.6
Carub.0001s2655 Capsella rubella HOM05D004931 ORTHO05D006579 1.4e-12 76.6 51 66.7
CARHR027590 Cardamine hirsuta HOM05D004931 ORTHO05D006579 1.4e-12 76.6 51 66.7
ECA238G3692 Erigeron canadensis HOM05D004931 ORTHO05D006579 1.4e-12 76.6 51 66.7
MBI07_g35974_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 1.4e-12 76.6 51 68.6
Sp1g24310 Schrenkiella parvula HOM05D004931 ORTHO05D006579 1.4e-12 76.6 51 66.7
MSTRG.455 Avicennia marina HOM05D004931 ORTHO05D006579 1.8e-12 76.3 54 63.0
Thhalv10008031m.g Eutrema salsugineum HOM05D004931 ORTHO05D006579 1.8e-12 76.3 51 64.7
Sed0016914 Sechium edule HOM05D004931 ORTHO05D006579 1.8e-12 76.3 51 68.6
vmacro10419 Vaccinium macrocarpon HOM05D004931 ORTHO05D006579 1.8e-12 76.3 54 64.8
Manes.09G188000 Manihot esculenta HOM05D004931 ORTHO05D006579 2.4e-12 75.9 51 64.7
SalBow2G3164 Salvia bowleyana HOM05D004931 ORTHO05D006579 2.4e-12 75.9 51 64.7
SGA_v2.0_scaffold80G25951 Striga asiatica HOM05D004931 ORTHO05D006579 3.1e-12 75.5 51 66.7
TWI36G0173 Tripterygium wilfordii HOM05D004931 ORTHO05D006579 3.1e-12 75.5 51 68.6
A08p25870 Brassica napus HOM05D004931 ORTHO05D006579 4.1e-12 75.1 51 66.7
BraA08t34541Z Brassica rapa HOM05D004931 ORTHO05D006579 4.1e-12 75.1 51 66.7
Duzib132G0410 Durio zibethinus HOM05D004931 ORTHO05D006579 4.1e-12 75.1 51 66.7
Ciclev10005352m.g Citrus clementina HOM05D004931 ORTHO05D006579 5.3e-12 74.7 51 66.7
BcaC01g00008 Brassica carinata HOM05D004931 ORTHO05D006579 9.1e-12 73.9 51 64.7
C03p74760 Brassica napus HOM05D004931 ORTHO05D006579 9.1e-12 73.9 51 64.7
BolC3t19725H Brassica oleracea HOM05D004931 ORTHO05D006579 9.1e-12 73.9 51 64.7
Nitab4.5_0007183g0010 Nicotiana tabacum HOM05D004931 ORTHO05D006579 9.1e-12 73.9 61 63.9
PGR102G0149 Punica granatum HOM05D004931 ORTHO05D006579 9.1e-12 73.9 51 64.7
Sabra01G0046800 Salix brachista HOM05D004931 ORTHO05D006579 9.1e-12 73.9 51 64.7
Sed0000722 Sechium edule HOM05D004931 ORTHO05D006579 9.1e-12 73.9 74 51.4
Migut.K01057 Erythranthe guttata HOM05D004931 ORTHO05D006579 1.2e-11 73.6 51 66.7
SEGI_13679 Sequoiadendron giganteum HOM05D004931 ORTHO05D006579 1.2e-11 73.6 51 60.8
Rhsim09G0128100 Rhododendron simsii HOM05D004931 ORTHO05D006579 1.5e-11 73.2 51 64.7
GSVIVG01001087001 Vitis vinifera HOM05D004931 ORTHO05D006579 2.6e-11 72.4 51 60.8
Aa31sc45G20 Aethionema arabicum HOM05D004931 ORTHO05D006579 3.4e-11 72.0 51 62.7
DCAR_024966 Daucus carota HOM05D004931 ORTHO05D006579 3.4e-11 72.0 51 60.8
HPP92_011677 Vanilla planifolia HOM05D004931 ORTHO05D006579 3.4e-11 72.0 51 60.8
HPP92_011736 Vanilla planifolia HOM05D004931 ORTHO05D006579 3.4e-11 72.0 51 60.8
Ca_00224_v3 Cicer arietinum L. HOM05D004931 ORTHO05D006579 4.5e-11 71.6 54 57.4
AagrBONN_evm.TU.Sc2ySwM_26.3 Anthoceros agrestis HOM05D004931 ORTHO05D006579 1.0e-10 70.5 54 55.6
AagrBONN_evm.TU.Sc2ySwM_368.2426 Anthoceros agrestis HOM05D004931 ORTHO05D006579 1.0e-10 70.5 54 55.6
Zm00001eb175560 Zea mays HOM05D004931 ORTHO05D006579 1.0e-10 70.5 54 59.3
Medtr2g011420 Medicago truncatula HOM05D004931 ORTHO05D006579 1.3e-10 70.1 54 57.4
Os08g0537800 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D006579 1.7e-10 69.7 54 57.4
ATR0582G144 Amborella trichopoda HOM05D004931 ORTHO05D006579 5.0e-10 68.2 51 58.8
arahy.Tifrunner.gnm1.ann1.BF7HNV Arachis hypogaea HOM05D004931 ORTHO05D006579 6.5e-10 67.8 51 62.7
arahy.Tifrunner.gnm1.ann1.Q671IP Arachis hypogaea HOM05D004931 ORTHO05D006579 6.5e-10 67.8 51 62.7
Glyma.15G065800 Glycine max HOM05D004931 ORTHO05D006579 6.5e-10 67.8 51 58.8
Psat1g210240 Pisum sativum HOM05D004931 ORTHO05D006579 6.5e-10 67.8 54 53.7
Mapoly0005s0248 Marchantia polymorpha HOM05D004931 ORTHO05D006579 1.1e-09 67.0 54 55.6
Peaxi162Scf00128g01757 Petunia axillaris HOM05D004931 ORTHO05D006579 1.1e-09 67.0 69 52.2
SMO358G0085 Selaginella moellendorffii HOM05D004931 ORTHO05D006579 1.1e-09 67.0 54 50.0
Glyma.13G248100 Glycine max HOM05D004931 ORTHO05D006579 1.9e-09 66.2 51 56.9
unitig_8.g2895 Utricularia gibba HOM05D004931 ORTHO05D006579 1.9e-09 66.2 51 54.9
VMungo0540G0694 Vigna mungo HOM05D004931 ORTHO05D006579 1.9e-09 66.2 51 58.8
Phvul.006G193900 Phaseolus vulgaris HOM05D004931 ORTHO05D006579 2.5e-09 65.9 51 56.9
TPR.G19613 Trifolium pratense HOM05D004931 ORTHO05D006579 2.5e-09 65.9 54 51.9
Hund26708 Selenicereus undatus HOM05D004931 ORTHO05D006579 9.4e-09 63.9 39 71.8
Lj6g0004184 Lotus japonicus HOM05D004931 ORTHO05D006579 3.6e-08 62.0 51 51.0
Lalb_Chr18g0060051 Lupinus albus HOM05D004931 ORTHO05D006579 6.1e-08 61.2 48 54.2
Lalb_Chr15g0090151 Lupinus albus HOM05D004931 ORTHO05D006579 1.4e-07 60.1 44 54.5
Pp3c6_24540 Physcomitrium patens HOM05D004931 ORTHO05D006579 2.3e-07 59.3 54 51.9
Pp3c5_2520 Physcomitrium patens HOM05D004931 ORTHO05D006579 3.9e-07 58.5 81 42.0
MBI10_g42797_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 8.8e-07 57.4 51 51.0
PSO832G0491 Papaver somniferum HOM05D004931 ORTHO05D006579 1.1e-06 57.0 62 50.0


User provided reference genes

Program Settings