Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g059290.1 Solanum lycopersicum HOM05D000513 ORTHO05D392344 1.0e-26 122.5 56 100.0
Solyc10g046840.1 Solanum lycopersicum HOM05D000513 ORTHO05D390120 1.3e-21 105.5 55 83.6
Solyc07g039260.2 Solanum lycopersicum HOM05D000513 ORTHO05D390603 2.5e-20 101.3 55 80.0
Solyc07g025180.2 Solanum lycopersicum HOM05D000513 ORTHO05D391786 5.6e-20 100.1 54 87.0
Solyc02g088000.3 Solanum lycopersicum HOM05D000513 ORTHO05D005338 8.0e-19 96.3 56 76.8
Sopen02g032740 Solanum pennellii HOM05D000513 ORTHO05D005338 8.0e-19 96.3 56 76.8
PGSC0003DMG400001328 Solanum tuberosum HOM05D000513 ORTHO05D005338 8.0e-19 96.3 56 76.8
Nn3g17255 Nelumbo nucifera HOM05D000513 ORTHO05D005338 1.5e-17 92.0 56 73.2
Nitab4.5_0000564g0020 Nicotiana tabacum HOM05D000513 ORTHO05D005338 5.8e-17 90.1 56 71.4
Nitab4.5_0002980g0050 Nicotiana tabacum HOM05D000513 ORTHO05D005338 5.8e-17 90.1 56 71.4
GSVIVG01011429001 Vitis vinifera HOM05D000513 ORTHO05D005338 5.8e-17 90.1 56 71.4
CAN.G206.155 Capsicum annuum HOM05D000513 ORTHO05D005338 7.5e-17 89.7 54 70.4
SalBow1G3534 Salvia bowleyana HOM05D000513 ORTHO05D005338 7.5e-17 89.7 56 69.6
SalBow1G6141 Salvia bowleyana HOM05D000513 ORTHO05D005338 7.5e-17 89.7 56 69.6
PGR004G2567 Punica granatum HOM05D000513 ORTHO05D005338 9.8e-17 89.4 56 69.6
AL3G11070 Arabidopsis lyrata HOM05D000513 ORTHO05D005338 1.3e-16 89.0 56 71.4
AT3G01180 Arabidopsis thaliana HOM05D000513 ORTHO05D005338 1.3e-16 89.0 56 71.4
BcaC05g30487 Brassica carinata HOM05D000513 ORTHO05D005338 1.3e-16 89.0 56 71.4
Carub.0003s0097 Capsella rubella HOM05D000513 ORTHO05D005338 1.3e-16 89.0 56 71.4
Thhalv10020091m.g Eutrema salsugineum HOM05D000513 ORTHO05D005338 1.3e-16 89.0 56 71.4
Gohir.D09G014100 Gossypium hirsutum HOM05D000513 ORTHO05D005338 1.3e-16 89.0 56 69.6
Gorai.006G016400 Gossypium raimondii HOM05D000513 ORTHO05D005338 1.3e-16 89.0 56 69.6
Oeu027855.1 Olea europaea HOM05D000513 ORTHO05D005338 1.3e-16 89.0 56 69.6
Oeu027856.1 Olea europaea HOM05D000513 ORTHO05D005338 1.3e-16 89.0 56 69.6
Atru.chr8.178 Acer truncatum HOM05D000513 ORTHO05D005338 2.9e-16 87.8 56 69.6
Aa31LG5G12440 Aethionema arabicum HOM05D000513 ORTHO05D005338 2.9e-16 87.8 56 71.4
Lj2g0016593 Lotus japonicus HOM05D000513 ORTHO05D005338 2.9e-16 87.8 56 69.6
Peaxi162Scf00129g00129 Petunia axillaris HOM05D000513 ORTHO05D005338 3.7e-16 87.4 56 69.6
BcaC09g47673 Brassica carinata HOM05D000513 ORTHO05D005338 4.9e-16 87.0 56 69.6
A05p44780 Brassica napus HOM05D000513 ORTHO05D005338 4.9e-16 87.0 56 69.6
BNapus_Darmor_BZH_scaffold_97p00120 Brassica napus HOM05D000513 ORTHO05D005338 4.9e-16 87.0 56 69.6
C09p75370 Brassica napus HOM05D000513 ORTHO05D005338 4.9e-16 87.0 56 69.6
BolC1t05933H Brassica oleracea HOM05D000513 ORTHO05D005338 4.9e-16 87.0 56 69.6
BolC5t35123H Brassica oleracea HOM05D000513 ORTHO05D005338 4.9e-16 87.0 56 69.6
BraA05t23179Z Brassica rapa HOM05D000513 ORTHO05D005338 4.9e-16 87.0 56 69.6
HanXRQChr09g0265221 Helianthus annuus HOM05D000513 ORTHO05D005338 4.9e-16 87.0 56 67.9
Sp3g00920 Schrenkiella parvula HOM05D000513 ORTHO05D005338 4.9e-16 87.0 56 69.6
Ah.12g059870 Amaranthus hybridus HOM05D000513 ORTHO05D005338 6.4e-16 86.7 56 66.1
Manes.02G046733 Manihot esculenta HOM05D000513 ORTHO05D005338 6.4e-16 86.7 56 67.9
CARHR075860 Cardamine hirsuta HOM05D000513 ORTHO05D005338 8.3e-16 86.3 56 69.6
MELO3C009861.2 Cucumis melo HOM05D000513 ORTHO05D005338 1.1e-15 85.9 56 69.6
THA.LOC104822355 Tarenaya hassleriana HOM05D000513 ORTHO05D005338 1.1e-15 85.9 56 67.9
Ah.10g031590 Amaranthus hybridus HOM05D000513 ORTHO05D005338 1.4e-15 85.5 56 66.1
arahy.Tifrunner.gnm1.ann1.27CGVJ Arachis hypogaea HOM05D000513 ORTHO05D005338 1.9e-15 85.1 56 66.1
arahy.Tifrunner.gnm1.ann1.9G3TAM Arachis hypogaea HOM05D000513 ORTHO05D005338 1.9e-15 85.1 56 66.1
Cfa007563 Carpinus fangiana HOM05D000513 ORTHO05D005338 1.9e-15 85.1 56 67.9
Cfa007565 Carpinus fangiana HOM05D000513 ORTHO05D005338 1.9e-15 85.1 56 67.9
ECA232G4228 Erigeron canadensis HOM05D000513 ORTHO05D005338 1.9e-15 85.1 56 66.1
Psat1g073520 Pisum sativum HOM05D000513 ORTHO05D005338 1.9e-15 85.1 56 64.3
Prupe.3G266700 Prunus persica HOM05D000513 ORTHO05D005338 1.9e-15 85.1 56 67.9
COL.COLO4_08442 Corchorus olitorius HOM05D000513 ORTHO05D005338 2.4e-15 84.7 56 64.3
DCAR_005562 Daucus carota HOM05D000513 ORTHO05D005338 2.4e-15 84.7 56 66.1
Eucgr.J01349 Eucalyptus grandis HOM05D000513 ORTHO05D005338 2.4e-15 84.7 56 67.9
FvH4_6g48410 Fragaria vesca HOM05D000513 ORTHO05D005338 2.4e-15 84.7 56 67.9
FAN02G2319 Fragaria x ananassa HOM05D000513 ORTHO05D005338 2.4e-15 84.7 56 67.9
Potri.017G084100 Populus trichocarpa HOM05D000513 ORTHO05D005338 2.4e-15 84.7 56 67.9
Sabra17G0074200 Salix brachista HOM05D000513 ORTHO05D005338 2.4e-15 84.7 56 67.9
ATR0564G338 Amborella trichopoda HOM05D000513 ORTHO05D005338 3.2e-15 84.3 56 64.3
Haze_14520 Corylus avellana HOM05D000513 ORTHO05D005338 3.2e-15 84.3 55 69.1
CSS0032498 Camellia sinensis var. sinensis HOM05D000513 ORTHO05D005338 4.1e-15 84.0 56 66.1
CSS0035890 Camellia sinensis var. sinensis HOM05D000513 ORTHO05D005338 4.1e-15 84.0 56 66.1
Duzib147G1357 Durio zibethinus HOM05D000513 ORTHO05D005338 4.1e-15 84.0 54 70.4
MD09G1052000 Malus domestica HOM05D000513 ORTHO05D005338 4.1e-15 84.0 56 66.1
RcHm_v2.0_Chr2g0168331 Rosa chinensis HOM05D000513 ORTHO05D005338 4.1e-15 84.0 55 67.3
Cpa.g.c36490 Carica papaya HOM05D000513 ORTHO05D005338 5.4e-15 83.6 55 67.3
Duzib187G1959 Durio zibethinus HOM05D000513 ORTHO05D005338 5.4e-15 83.6 55 67.3
Glyma.19G022900 Glycine max HOM05D000513 ORTHO05D005338 5.4e-15 83.6 56 66.1
Gorai.009G348800 Gossypium raimondii HOM05D000513 ORTHO05D005338 5.4e-15 83.6 56 66.1
Ca_04285_v3 Cicer arietinum L. HOM05D000513 ORTHO05D005338 7.0e-15 83.2 56 64.3
Ca_29846_v3 Cicer arietinum L. HOM05D000513 ORTHO05D005338 7.0e-15 83.2 56 64.3
ClCG10G015190 Citrullus lanatus HOM05D000513 ORTHO05D005338 7.0e-15 83.2 56 66.1
Dinv34148 Davidia involucrata HOM05D000513 ORTHO05D005338 7.0e-15 83.2 56 66.1
Sc10g0003570 Simmondsia chinensis HOM05D000513 ORTHO05D005338 7.0e-15 83.2 56 62.5
arahy.Tifrunner.gnm1.ann1.UUZ1A7 Arachis hypogaea HOM05D000513 ORTHO05D005338 9.2e-15 82.8 54 68.5
CsaV3_3G041330 Cucumis sativus L. HOM05D000513 ORTHO05D005338 9.2e-15 82.8 56 66.1
Migut.H00928 Erythranthe guttata HOM05D000513 ORTHO05D005338 9.2e-15 82.8 56 66.1
Lalb_Chr21g0318691 Lupinus albus HOM05D000513 ORTHO05D005338 9.2e-15 82.8 56 62.5
Thecc.04G083300 Theobroma cacao HOM05D000513 ORTHO05D005338 9.2e-15 82.8 54 68.5
FAN09G0920 Fragaria x ananassa HOM05D000513 ORTHO05D005338 1.2e-14 82.4 54 68.5
TAR374G1602 Trochodendron aralioides HOM05D000513 ORTHO05D005338 1.2e-14 82.4 56 66.1
Lj4A110T78 Lonicera japonica HOM05D000513 ORTHO05D005338 1.6e-14 82.0 55 63.6
Medtr6g012380 Medicago truncatula HOM05D000513 ORTHO05D005338 1.6e-14 82.0 56 62.5
CiPaw.04G016900 Carya illinoinensis HOM05D000513 ORTHO05D005338 2.0e-14 81.6 54 66.7
Ciclev10011124m.g Citrus clementina HOM05D000513 ORTHO05D005338 2.0e-14 81.6 56 66.1
Zm00001eb222830 Zea mays HOM05D000513 ORTHO05D005338 2.0e-14 81.6 56 62.5
MSTRG.3241 Avicennia marina HOM05D000513 ORTHO05D005338 2.7e-14 81.3 54 64.8
CiPaw.03G025800 Carya illinoinensis HOM05D000513 ORTHO05D005338 2.7e-14 81.3 56 62.5
Gohir.A09G015500 Gossypium hirsutum HOM05D000513 ORTHO05D005338 2.7e-14 81.3 56 64.3
MD00G1130900 Malus domestica HOM05D000513 ORTHO05D005338 2.7e-14 81.3 56 67.9
Gohir.A07G205600 Gossypium hirsutum HOM05D000513 ORTHO05D005338 3.5e-14 80.9 55 67.3
Gohir.D07G211700 Gossypium hirsutum HOM05D000513 ORTHO05D005338 3.5e-14 80.9 55 67.3
Gorai.001G239200 Gossypium raimondii HOM05D000513 ORTHO05D005338 3.5e-14 80.9 55 67.3
MBI02_g15396_MAGBIO Magnolia biondii HOM05D000513 ORTHO05D005338 3.5e-14 80.9 54 64.8
Os10g0437600 Oryza sativa ssp. japonica HOM05D000513 ORTHO05D005338 3.5e-14 80.9 56 62.5
Phvul.008G036600 Phaseolus vulgaris HOM05D000513 ORTHO05D005338 3.5e-14 80.9 56 64.3
CDE09G0475 Ceratophyllum demersum HOM05D000513 ORTHO05D005338 4.6e-14 80.5 54 64.8
Actinidia38766 Actinidia chinensis HOM05D000513 ORTHO05D005338 6.0e-14 80.1 55 65.5
Actinidia38784 Actinidia chinensis HOM05D000513 ORTHO05D005338 6.0e-14 80.1 55 65.5
Aqoxy3G03405 Aquilegia oxysepala HOM05D000513 ORTHO05D005338 6.0e-14 80.1 55 65.5
Aqoxy3G03409 Aquilegia oxysepala HOM05D000513 ORTHO05D005338 6.0e-14 80.1 55 65.5
EL10Ac2g02984 Beta vulgaris HOM05D000513 ORTHO05D005338 6.0e-14 80.1 56 58.9
Lj1g0028208 Lotus japonicus HOM05D000513 ORTHO05D005338 6.0e-14 80.1 54 66.7
VMungo1383G0284 Vigna mungo HOM05D000513 ORTHO05D005338 6.0e-14 80.1 56 66.1
Dinv33768 Davidia involucrata HOM05D000513 ORTHO05D005338 7.8e-14 79.7 54 64.8
Hund15597 Selenicereus undatus HOM05D000513 ORTHO05D005338 1.0e-13 79.3 55 63.6
CDE02G4400 Ceratophyllum demersum HOM05D000513 ORTHO05D005338 1.3e-13 79.0 55 63.6
AUR62034405 Chenopodium quinoa HOM05D000513 ORTHO05D005338 1.3e-13 79.0 56 60.7
AUR62039808 Chenopodium quinoa HOM05D000513 ORTHO05D005338 1.3e-13 79.0 56 60.7
Glyma.13G062700 Glycine max HOM05D000513 ORTHO05D005338 1.3e-13 79.0 53 64.2
Manes.01G091700 Manihot esculenta HOM05D000513 ORTHO05D005338 1.3e-13 79.0 55 63.6
Sed0000175 Sechium edule HOM05D000513 ORTHO05D005338 1.3e-13 79.0 56 64.3
TAR622G0870 Trochodendron aralioides HOM05D000513 ORTHO05D005338 1.3e-13 79.0 56 64.3
CANSAT64G2318 Cannabis sativa HOM05D000513 ORTHO05D005338 1.7e-13 78.6 53 66.0
QL02p082359 Quercus lobata HOM05D000513 ORTHO05D005338 1.7e-13 78.6 54 63.0
TWI32G0103 Tripterygium wilfordii HOM05D000513 ORTHO05D005338 1.7e-13 78.6 56 64.3
FAN14G5629 Fragaria x ananassa HOM05D000513 ORTHO05D005338 2.3e-13 78.2 53 66.0
Rhsim08G0070300 Rhododendron simsii HOM05D000513 ORTHO05D005338 2.3e-13 78.2 56 64.3
Oeu039526.1 Olea europaea HOM05D000513 ORTHO05D005338 3.0e-13 77.8 54 66.7
Os02g0744700 Oryza sativa ssp. japonica HOM05D000513 ORTHO05D005338 3.9e-13 77.4 56 58.9
Sed0017521 Sechium edule HOM05D000513 ORTHO05D005338 5.0e-13 77.0 53 66.0
CDE04G1630 Ceratophyllum demersum HOM05D000513 ORTHO05D005338 6.6e-13 76.6 53 62.3
MBI05_g34358_MAGBIO Magnolia biondii HOM05D000513 ORTHO05D005338 8.6e-13 76.3 53 64.2
Nn5g27400 Nelumbo nucifera HOM05D000513 ORTHO05D009133 8.6e-13 76.3 53 62.3
VMungo0464G2006 Vigna mungo HOM05D000513 ORTHO05D005338 8.6e-13 76.3 54 59.3
Os06g0229800 Oryza sativa ssp. japonica HOM05D000513 ORTHO05D005338 1.1e-12 75.9 56 60.7
SEGI_10180 Sequoiadendron giganteum HOM05D000513 ORTHO05D005338 1.1e-12 75.9 55 56.4
Zm00001eb194550 Zea mays HOM05D000513 ORTHO05D005338 1.1e-12 75.9 56 58.9
Zm00001eb254490 Zea mays HOM05D000513 ORTHO05D005338 1.5e-12 75.5 56 58.9
Cc07_g03430 Coffea canephora HOM05D000513 ORTHO05D005338 1.9e-12 75.1 54 61.1
Lalb_Chr02g0159331 Lupinus albus HOM05D000513 ORTHO05D005338 1.9e-12 75.1 53 60.4
PSO013G0263 Papaver somniferum HOM05D000513 ORTHO05D005338 1.9e-12 75.1 55 60.0
PSO832G4046 Papaver somniferum HOM05D000513 ORTHO05D005338 1.9e-12 75.1 55 60.0
HPP92_006026 Vanilla planifolia HOM05D000513 ORTHO05D005338 3.3e-12 74.3 53 60.4
Lsat_1_v5_gn_2_88360 Lactuca sativa HOM05D000513 ORTHO05D005338 4.3e-12 73.9 53 60.4
Phvul.004G029100 Phaseolus vulgaris HOM05D000513 ORTHO05D005338 4.3e-12 73.9 53 60.4
vmacro18187 Vaccinium macrocarpon HOM05D000513 ORTHO05D005338 4.3e-12 73.9 54 61.1
Nn1g06414 Nelumbo nucifera HOM05D000513 ORTHO05D011790 5.6e-12 73.6 49 65.3
Nn3g20772 Nelumbo nucifera HOM05D000513 ORTHO05D011790 9.5e-12 72.8 53 62.3
Glyma.18G260101 Glycine max HOM05D000513 ORTHO05D011790 1.2e-11 72.4 55 61.8
SGA_v2.0_scaffold499G52491 Striga asiatica HOM05D000513 ORTHO05D005338 1.6e-11 72.0 55 56.4
ECA238G0428 Erigeron canadensis HOM05D000513 ORTHO05D005338 2.1e-11 71.6 56 57.1
Nn3g21973 Nelumbo nucifera HOM05D000513 ORTHO05D011790 2.1e-11 71.6 49 63.3
Zm00001eb279740 Zea mays HOM05D000513 ORTHO05D005338 3.6e-11 70.9 53 60.4
CSS0041358 Camellia sinensis var. sinensis HOM05D000513 ORTHO05D005338 6.2e-11 70.1 52 61.5
HanXRQChr14g0449751 Helianthus annuus HOM05D000513 ORTHO05D005338 8.0e-11 69.7 56 53.6
TPR.G8813 Trifolium pratense HOM05D000513 ORTHO05D005338 1.4e-10 68.9 46 60.9
SMO234G0040 Selaginella moellendorffii HOM05D000513 ORTHO05D005338 2.6e-09 64.7 54 50.0
CsaV3_3G041360 Cucumis sativus L. HOM05D000513 ORTHO05D011790 5.8e-09 63.5 38 68.4
Nn5g27389 Nelumbo nucifera HOM05D000513 ORTHO05D011790 7.5e-09 63.2 49 53.1
Mapoly0148s0026 Marchantia polymorpha HOM05D000513 ORTHO05D005338 9.8e-09 62.8 52 50.0
AagrBONN_evm.TU.Sc2ySwM_344.4941 Anthoceros agrestis HOM05D000513 ORTHO05D005338 1.3e-08 62.4 55 47.3
Pp3c21_6820 Physcomitrium patens HOM05D000513 ORTHO05D005338 1.3e-08 62.4 56 46.4
Pp3c21_6821 Physcomitrium patens HOM05D000513 ORTHO05D005338 1.3e-08 62.4 56 46.4
Nn1g05073 Nelumbo nucifera HOM05D000513 ORTHO05D011790 1.7e-08 62.0 48 56.2
Nn4g25513 Nelumbo nucifera HOM05D000513 ORTHO05D011790 2.9e-08 61.2 42 61.9
SEGI_17123 Sequoiadendron giganteum HOM05D000513 ORTHO05D005338 3.7e-08 60.8 55 45.5
CBR_g23365 Chara braunii HOM05D000513 ORTHO05D005338 4.9e-08 60.5 55 43.6
Cre03.g185250 Chlamydomonas reinhardtii HOM05D000513 ORTHO05D005338 4.9e-08 60.5 53 45.3
Pp3c19_7710 Physcomitrium patens HOM05D000513 ORTHO05D005338 4.9e-08 60.5 56 44.6
Pp3c19_7712 Physcomitrium patens HOM05D000513 ORTHO05D005338 4.9e-08 60.5 56 44.6
CSS0036692 Camellia sinensis var. sinensis HOM05D000513 ORTHO05D005338 6.4e-08 60.1 41 63.4
Pp3c22_6120 Physcomitrium patens HOM05D000513 ORTHO05D005338 8.3e-08 59.7 53 49.1
Nn1g03400 Nelumbo nucifera HOM05D000513 ORTHO05D017819 9.2e-07 56.2 35 62.9
Nn2g12662 Nelumbo nucifera HOM05D000513 ORTHO05D011790 1.2e-06 55.8 35 62.9
Thecc.04G083100 Theobroma cacao HOM05D000513 ORTHO05D011790 3.5e-06 54.3 34 67.6


User provided reference genes

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