Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g044190.3 Solanum lycopersicum HOM05D005694 ORTHO05D007402 6.6e-235 817.0 415 100.0
Sopen03g008170 Solanum pennellii HOM05D005694 ORTHO05D007402 5.2e-232 807.4 415 98.6
PGSC0003DMG400014873 Solanum tuberosum HOM05D005694 ORTHO05D007402 8.1e-201 703.7 382 92.1
Nitab4.5_0002657g0010 Nicotiana tabacum HOM05D005694 ORTHO05D007402 3.9e-195 684.9 422 82.0
Nitab4.5_0003962g0030 Nicotiana tabacum HOM05D005694 ORTHO05D007402 4.8e-193 677.9 420 81.4
Peaxi162Scf00365g00618 Petunia axillaris HOM05D005694 ORTHO05D007402 2.0e-175 619.4 383 80.4
MSTRG.2849 Avicennia marina HOM05D005694 ORTHO05D007402 1.8e-171 606.3 414 72.7
Oeu037163.1 Olea europaea HOM05D005694 ORTHO05D007402 4.5e-167 591.7 373 76.1
Prupe.6G229100 Prunus persica HOM05D005694 ORTHO05D007402 2.2e-166 589.3 415 71.6
Migut.H00394 Erythranthe guttata HOM05D005694 ORTHO05D007402 3.2e-165 585.5 401 72.6
SGA_v2.0_scaffold143G35788 Striga asiatica HOM05D005694 ORTHO05D007402 1.6e-164 583.2 383 73.1
Thecc.01G063300 Theobroma cacao HOM05D005694 ORTHO05D007402 2.8e-161 572.4 386 73.6
FvH4_1g16760 Fragaria vesca HOM05D005694 ORTHO05D007402 1.4e-160 570.1 411 70.1
RcHm_v2.0_Chr2g0106661 Rosa chinensis HOM05D005694 ORTHO05D007402 2.4e-160 569.3 417 68.3
MELO3C007585.2 Cucumis melo HOM05D005694 ORTHO05D007402 7.7e-159 564.3 403 69.7
Duzib264G0643 Durio zibethinus HOM05D005694 ORTHO05D007402 5.0e-158 561.6 380 73.4
Potri.005G060500 Populus trichocarpa HOM05D005694 ORTHO05D007402 1.5e-157 560.1 376 72.1
FAN23G2399 Fragaria x ananassa HOM05D005694 ORTHO05D007402 2.5e-157 559.3 413 68.0
Sabra05G0051000 Salix brachista HOM05D005694 ORTHO05D007402 4.2e-157 558.5 380 71.8
CsaV3_6G043550 Cucumis sativus L. HOM05D005694 ORTHO05D007402 5.5e-157 558.1 410 67.6
FAN19G0282 Fragaria x ananassa HOM05D005694 ORTHO05D007402 7.2e-157 557.8 411 69.1
FAN26G1197 Fragaria x ananassa HOM05D005694 ORTHO05D007402 9.4e-157 557.4 411 69.1
Hund16366 Selenicereus undatus HOM05D005694 ORTHO05D007402 3.6e-156 555.4 410 67.1
Gorai.007G218000 Gossypium raimondii HOM05D005694 ORTHO05D007402 6.1e-156 554.7 386 71.2
COL.COLO4_11482 Corchorus olitorius HOM05D005694 ORTHO05D007402 1.0e-155 553.9 385 71.2
CANSAT25G2140 Cannabis sativa HOM05D005694 ORTHO05D007402 3.0e-155 552.4 415 68.0
Ciclev10025664m.g Citrus clementina HOM05D005694 ORTHO05D007402 4.0e-155 552.0 386 71.0
EL10Ac6g15690 Beta vulgaris HOM05D005694 ORTHO05D007402 1.5e-154 550.1 397 69.3
Lsat_1_v5_gn_3_88661 Lactuca sativa HOM05D005694 ORTHO05D007402 2.6e-154 549.3 400 67.8
Manes.12G108400 Manihot esculenta HOM05D005694 ORTHO05D007402 2.6e-154 549.3 388 69.8
arahy.Tifrunner.gnm1.ann1.ZT89Y7 Arachis hypogaea HOM05D005694 ORTHO05D007402 4.4e-154 548.5 381 69.3
CANSAT25G0291 Cannabis sativa HOM05D005694 ORTHO05D007402 4.4e-154 548.5 416 67.1
BraA05t22832Z Brassica rapa HOM05D005694 ORTHO05D007402 7.5e-154 547.7 381 70.1
Haze_15351 Corylus avellana HOM05D005694 ORTHO05D007402 7.5e-154 547.7 394 69.0
HanXRQChr12g0377261 Helianthus annuus HOM05D005694 ORTHO05D007402 7.5e-154 547.7 392 68.1
CiPaw.01G012900 Carya illinoinensis HOM05D005694 ORTHO05D007402 2.2e-153 546.2 409 67.2
ClCG01G017080 Citrullus lanatus HOM05D005694 ORTHO05D007402 2.2e-153 546.2 403 68.0
BcaB06g28844 Brassica carinata HOM05D005694 ORTHO05D007402 4.8e-153 545.0 387 68.7
Gohir.D11G203300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 4.8e-153 545.0 380 71.1
Thhalv10004317m.g Eutrema salsugineum HOM05D005694 ORTHO05D007402 8.3e-153 544.3 396 67.9
Cpa.g.sc6.99 Carica papaya HOM05D005694 ORTHO05D007402 1.8e-152 543.1 407 66.8
Cfa004061 Carpinus fangiana HOM05D005694 ORTHO05D007402 1.8e-152 543.1 394 68.3
BcaC05g29844 Brassica carinata HOM05D005694 ORTHO05D007402 2.4e-152 542.7 400 67.2
BolC5t34672H Brassica oleracea HOM05D005694 ORTHO05D007402 2.4e-152 542.7 400 67.2
A05p41050 Brassica napus HOM05D005694 ORTHO05D007402 4.1e-152 542.0 377 69.2
QL06p040237 Quercus lobata HOM05D005694 ORTHO05D007402 4.1e-152 542.0 392 67.3
AL8G44040 Arabidopsis lyrata HOM05D005694 ORTHO05D007402 9.1e-152 540.8 365 71.8
Lj4g0009127 Lotus japonicus HOM05D005694 ORTHO05D007402 9.1e-152 540.8 405 64.9
MD02G1178800 Malus domestica HOM05D005694 ORTHO05D007402 9.1e-152 540.8 356 73.3
Glyma.17G167200 Glycine max HOM05D005694 ORTHO05D007402 7.7e-151 537.7 380 68.9
Atru.chr3.251 Acer truncatum HOM05D005694 ORTHO05D007402 1.0e-150 537.3 376 68.9
PGR004G1079 Punica granatum HOM05D005694 ORTHO05D007402 1.3e-150 537.0 413 64.9
ECA246G1807 Erigeron canadensis HOM05D005694 ORTHO05D007402 1.7e-150 536.6 385 67.3
AUR62003938 Chenopodium quinoa HOM05D005694 ORTHO05D007402 2.2e-150 536.2 407 65.8
Sed0004561 Sechium edule HOM05D005694 ORTHO05D007402 6.5e-150 534.6 415 65.3
Lalb_Chr16g0388811 Lupinus albus HOM05D005694 ORTHO05D007402 8.5e-150 534.3 375 68.5
Actinidia12019 Actinidia chinensis HOM05D005694 ORTHO05D007402 3.2e-149 532.3 362 72.4
Sp2g29370 Schrenkiella parvula HOM05D005694 ORTHO05D007402 3.2e-149 532.3 366 71.0
AUR62038254 Chenopodium quinoa HOM05D005694 ORTHO05D007402 4.2e-149 531.9 395 66.6
Rhsim10G0112600 Rhododendron simsii HOM05D005694 ORTHO05D007402 4.2e-149 531.9 415 64.3
Medtr4g094962 Medicago truncatula HOM05D005694 ORTHO05D007402 1.6e-148 530.0 404 64.9
CARHR280330 Cardamine hirsuta HOM05D005694 ORTHO05D007402 3.6e-148 528.9 380 68.4
CSS0006569 Camellia sinensis var. sinensis HOM05D005694 ORTHO05D007402 4.7e-148 528.5 366 71.9
AT5G67290 Arabidopsis thaliana HOM05D005694 ORTHO05D007402 6.1e-148 528.1 386 68.7
C05p60220 Brassica napus HOM05D005694 ORTHO05D007402 8.0e-148 527.7 425 63.1
Nn1g04704 Nelumbo nucifera HOM05D005694 ORTHO05D007402 1.4e-147 526.9 410 64.4
Aqoxy6G02871 Aquilegia oxysepala HOM05D005694 ORTHO05D007402 1.8e-147 526.6 412 65.0
Carub.0008s2721 Capsella rubella HOM05D005694 ORTHO05D007402 1.8e-147 526.6 366 69.4
VMungo0251G0564 Vigna mungo HOM05D005694 ORTHO05D007402 3.0e-147 525.8 379 65.7
Aa31LG1G15820 Aethionema arabicum HOM05D005694 ORTHO05D007402 6.8e-147 524.6 377 67.1
Psat4g084360 Pisum sativum HOM05D005694 ORTHO05D007402 1.2e-146 523.9 388 66.5
THA.LOC104819246 Tarenaya hassleriana HOM05D005694 ORTHO05D007402 1.5e-146 523.5 374 67.9
Gohir.A11G220300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 7.5e-146 521.2 385 69.1
arahy.Tifrunner.gnm1.ann1.MA1EVV Arachis hypogaea HOM05D005694 ORTHO05D007402 1.7e-145 520.0 448 58.9
unitig_46.g18707 Utricularia gibba HOM05D005694 ORTHO05D007402 2.8e-145 519.2 378 66.1
PSO541G0377 Papaver somniferum HOM05D005694 ORTHO05D007402 4.9e-145 518.5 379 67.0
Phvul.003G240300 Phaseolus vulgaris HOM05D005694 ORTHO05D007402 4.9e-145 518.5 379 65.4
TAR625G0317 Trochodendron aralioides HOM05D005694 ORTHO05D007402 4.9e-145 518.5 386 66.6
Ca_22124_v3 Cicer arietinum L. HOM05D005694 ORTHO05D007402 1.4e-144 516.9 374 67.6
Duzib147G1433 Durio zibethinus HOM05D005694 ORTHO05D007402 1.2e-143 513.8 383 67.9
Cc11_g04760 Coffea canephora HOM05D005694 ORTHO05D007402 1.3e-142 510.4 417 63.3
Eucgr.I00761 Eucalyptus grandis HOM05D005694 ORTHO05D007402 2.5e-141 506.1 379 67.3
DCAR_025759 Daucus carota HOM05D005694 ORTHO05D007402 4.3e-141 505.4 409 62.8
TAR625G0863 Trochodendron aralioides HOM05D005694 ORTHO05D007402 5.6e-141 505.0 401 64.1
TAR381G0027 Trochodendron aralioides HOM05D005694 ORTHO05D007402 9.5e-141 504.2 370 67.8
TAR381G0285 Trochodendron aralioides HOM05D005694 ORTHO05D007402 9.5e-141 504.2 370 67.8
PSO675G2151 Papaver somniferum HOM05D005694 ORTHO05D007402 2.1e-140 503.1 404 63.1
TPR.G23863 Trifolium pratense HOM05D005694 ORTHO05D007402 2.1e-140 503.1 393 64.4
Eucgr.I00787 Eucalyptus grandis HOM05D005694 ORTHO05D007402 2.8e-140 502.7 379 66.8
Sc16g0005230 Simmondsia chinensis HOM05D005694 ORTHO05D007402 6.8e-139 498.0 379 63.6
Glyma.05G097800 Glycine max HOM05D005694 ORTHO05D007402 2.2e-137 493.0 387 63.8
Lj4g0018653 Lotus japonicus HOM05D005694 ORTHO05D007402 2.9e-137 492.7 412 60.9
Dinv26866 Davidia involucrata HOM05D005694 ORTHO05D007402 1.1e-136 490.7 366 67.5
ATR1098G030 Amborella trichopoda HOM05D005694 ORTHO05D007402 4.6e-127 458.8 365 63.0
Sc16g0005220 Simmondsia chinensis HOM05D005694 ORTHO05D007402 1.7e-126 456.8 379 59.9
vmacro05254 Vaccinium macrocarpon HOM05D005694 ORTHO05D007402 3.3e-125 452.6 417 58.3
CDE06G0326 Ceratophyllum demersum HOM05D005694 ORTHO05D007402 1.6e-124 450.3 363 62.0
Dinv30033 Davidia involucrata HOM05D005694 ORTHO05D007402 1.2e-122 444.1 362 62.4
CAN.G572.58 Capsicum annuum HOM05D005694 ORTHO05D007402 1.0e-118 431.0 278 79.1
HPP92_017733 Vanilla planifolia HOM05D005694 ORTHO05D007402 3.0e-118 429.5 364 60.2
Os07g0155100 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 3.3e-117 426.0 392 57.7
Zm00001eb300250 Zea mays HOM05D005694 ORTHO05D007402 2.1e-116 423.3 377 59.2
SEGI_26559 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 4.0e-115 419.1 388 55.7
Mapoly0178s0017 Marchantia polymorpha HOM05D005694 ORTHO05D007402 2.6e-114 416.4 388 55.2
HanXRQChr02g0044351 Helianthus annuus HOM05D005694 ORTHO05D007402 4.4e-114 415.6 368 57.3
AagrBONN_evm.TU.Sc2ySwM_117.3787 Anthoceros agrestis HOM05D005694 ORTHO05D007402 5.1e-110 402.1 387 52.5
Pp3c14_12180 Physcomitrium patens HOM05D005694 ORTHO05D007402 1.1e-109 401.0 373 57.1
ECA238G4251 Erigeron canadensis HOM05D005694 ORTHO05D007402 1.5e-106 390.6 368 55.7
SMO351G0208 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 1.3e-105 387.5 372 51.9
SMO367G0384 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 5.6e-101 372.1 380 52.1
HPP92_017700 Vanilla planifolia HOM05D005694 ORTHO05D007402 3.0e-94 349.7 315 57.8
Lj7C77T1 Lonicera japonica HOM05D005694 ORTHO05D007402 9.6e-93 344.7 261 64.0
SEGI_01647 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 9.0e-91 338.2 385 48.1
Aa31LG1G15830 Aethionema arabicum HOM05D005694 ORTHO05D007402 8.7e-86 321.6 224 67.9
Mapoly0178s0018 Marchantia polymorpha HOM05D005694 ORTHO05D007402 9.6e-85 318.2 316 53.5
FAN28G1711 Fragaria x ananassa HOM05D005694 ORTHO05D007402 2.5e-77 293.5 178 78.1
FAN28G1889 Fragaria x ananassa HOM05D005694 ORTHO05D007402 2.5e-77 293.5 178 78.1
Cre16.g671450 Chlamydomonas reinhardtii HOM05D005694 ORTHO05D007402 6.3e-76 288.9 389 43.7
MCO03G407 Micromonas commoda HOM05D005694 ORTHO05D007402 1.9e-64 250.8 386 41.5
Actinidia36463 Actinidia chinensis HOM05D005694 ORTHO05D007402 1.5e-58 231.1 170 67.1
MCO09G374 Micromonas commoda HOM05D005694 ORTHO05D007402 2.2e-57 227.3 410 39.0
Lj7A77T5 Lonicera japonica HOM05D005694 ORTHO05D007402 2.7e-47 193.7 117 77.8
Aa31LG1G15840 Aethionema arabicum HOM05D005694 ORTHO05D007402 5.5e-40 169.5 135 67.4
Aa31sc2295G20 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.0e-38 165.2 130 62.3
Cfa023451 Carpinus fangiana HOM05D000115 ORTHO05D005317 1.4e-38 164.9 398 33.2
Aa31LG1G18440 Aethionema arabicum HOM05D005694 ORTHO05D007402 6.3e-36 156.0 142 59.9
Medtr8g072720 Medicago truncatula HOM05D005694 ORTHO05D007402 1.2e-26 125.2 83 73.5
PRCOL_00002834 Prasinoderma coloniale HOM05D005694 ORTHO05D007402 4.5e-26 123.2 385 30.6
BcaNung00805 Brassica carinata HOM05D005694 ORTHO05D007402 2.0e-13 81.3 80 56.2
Aa31LG1G18450 Aethionema arabicum HOM05D005694 ORTHO05D007402 6.6e-09 66.2 73 46.6
Aa31sc2295G10 Aethionema arabicum HOM05D005694 ORTHO05D007402 6.6e-09 66.2 73 46.6
Os01g0594800 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 2.5e-08 64.3 107 37.4
Cfa026332 Carpinus fangiana HOM05D005694 ORTHO05D123404 7.3e-08 62.8 332 23.2
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 3.1e-06 57.4 401 22.9


User provided reference genes

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