Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 1.5e-179 632.9 345 100.0
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 1.1e-177 626.7 345 98.8
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 1.9e-163 579.3 345 91.0
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 3.0e-148 528.9 345 84.1
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 4.0e-145 518.5 345 82.6
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 4.0e-145 518.5 345 82.0
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 4.6e-141 505.0 345 81.2
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 3.0e-140 502.3 345 79.7
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 3.3e-139 498.8 315 87.0
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 1.3e-138 496.9 345 78.6
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 5.3e-137 491.5 345 76.2
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 5.8e-136 488.0 345 76.8
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 2.2e-135 486.1 345 75.9
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 4.9e-135 485.0 345 75.1
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 8.4e-135 484.2 344 76.7
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 1.9e-134 483.0 345 75.4
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 9.3e-134 480.7 345 75.9
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 2.1e-133 479.6 345 74.5
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 3.5e-133 478.8 346 76.6
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 1.0e-132 477.2 345 74.8
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 1.3e-132 476.9 345 73.6
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 1.8e-132 476.5 345 75.1
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 5.1e-132 474.9 345 73.9
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.9e-131 473.0 341 78.0
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 2.8e-130 469.2 335 74.6
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 3.7e-130 468.8 345 73.3
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 4.8e-130 468.4 335 74.9
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 6.3e-130 468.0 341 75.1
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 4.1e-129 465.3 345 73.3
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 6.9e-129 464.5 341 74.5
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 4.5e-128 461.8 347 73.8
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 5.9e-128 461.5 337 72.4
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 1.0e-127 460.7 345 72.5
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 1.3e-127 460.3 345 71.6
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 2.2e-127 459.5 342 72.5
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 6.5e-127 458.0 370 69.5
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 8.5e-127 457.6 345 69.9
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 2.5e-126 456.1 345 71.6
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 5.5e-126 454.9 345 71.9
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 5.5e-126 454.9 345 71.3
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.2e-125 453.8 345 71.3
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 2.7e-125 452.6 345 71.0
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 3.6e-125 452.2 345 71.3
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 7.9e-125 451.1 345 70.7
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 1.3e-124 450.3 335 72.5
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 8.7e-124 447.6 345 69.9
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 2.5e-123 446.0 345 71.6
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 1.3e-122 443.7 345 68.4
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 3.7e-122 442.2 319 76.5
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 3.7e-122 442.2 345 68.7
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 5.3e-121 438.3 345 67.2
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 1.5e-120 436.8 345 69.0
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 3.4e-120 435.6 345 68.7
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 3.8e-119 432.2 344 67.7
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 6.5e-119 431.4 342 67.8
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 8.5e-119 431.0 345 66.7
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 1.2e-117 427.2 344 67.2
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 2.1e-117 426.4 340 66.5
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 3.6e-117 425.6 345 69.3
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 3.6e-117 425.6 345 69.3
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 1.0e-116 424.1 345 66.7
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 6.7e-116 421.4 345 67.5
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 1.4e-113 413.7 345 65.5
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 2.6e-112 409.5 345 66.4
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 2.6e-112 409.5 345 65.8
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 4.5e-112 408.7 287 78.0
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 7.7e-112 407.9 340 65.6
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 1.0e-111 407.5 287 75.3
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 1.1e-110 404.1 319 69.9
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 1.4e-110 403.7 394 60.2
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.9e-110 403.3 345 66.4
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 1.6e-109 400.2 345 64.9
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.6e-109 400.2 345 66.1
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 7.9e-109 397.9 345 64.9
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 2.3e-108 396.4 346 64.2
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 3.9e-108 395.6 331 65.3
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 2.0e-107 393.3 346 66.2
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 4.8e-106 388.7 328 65.5
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 1.4e-105 387.1 261 80.1
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 3.1e-105 386.0 345 64.1
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 3.1e-105 386.0 341 61.9
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 1.6e-104 383.6 345 64.3
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 2.6e-104 382.9 345 62.9
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 5.9e-104 381.7 345 61.7
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 7.7e-104 381.3 345 62.0
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.7e-103 380.2 345 64.1
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 1.1e-102 377.5 345 61.2
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 4.7e-101 372.1 337 61.4
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 2.3e-100 369.8 345 60.9
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 2.3e-100 369.8 345 60.9
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 6.7e-100 368.2 347 59.1
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 2.0e-99 366.7 287 67.6
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 3.1e-97 359.4 345 59.1
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 7.0e-97 358.2 345 58.6
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 1.6e-96 357.1 345 59.7
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 2.0e-96 356.7 338 59.2
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 2.7e-96 356.3 373 57.6
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 1.7e-95 353.6 366 56.8
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 2.2e-95 353.2 345 60.6
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 6.5e-95 351.7 345 60.6
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 8.5e-95 351.3 348 58.3
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 4.2e-94 349.0 319 63.6
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 5.5e-94 348.6 322 59.6
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 2.7e-93 346.3 345 57.1
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 8.0e-93 344.7 350 57.1
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 8.8e-92 341.3 343 57.7
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 2.6e-91 339.7 349 56.4
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 7.5e-91 338.2 345 55.7
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 9.8e-91 337.8 348 56.9
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 2.4e-89 333.2 323 58.5
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 5.4e-89 332.0 323 58.5
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 2.7e-88 329.7 345 54.5
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 6.5e-87 325.1 346 55.8
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 6.5e-87 325.1 346 55.8
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.5e-86 323.9 347 56.5
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 1.9e-86 323.6 346 55.2
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 1.6e-85 320.5 346 54.6
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 3.0e-84 316.2 324 56.5
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 6.8e-84 315.1 344 53.8
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 3.4e-83 312.8 346 55.8
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 4.1e-81 305.8 341 55.7
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 7.8e-80 301.6 348 52.9
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 3.8e-79 299.3 346 53.8
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 3.8e-79 299.3 288 59.4
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 6.6e-79 298.5 346 52.9
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 8.6e-79 298.1 315 57.5
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 5.6e-78 295.4 346 51.4
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 1.2e-77 294.3 340 48.8
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 4.7e-77 292.4 318 55.0
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 1.8e-76 290.4 341 53.4
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 2.6e-75 286.6 343 52.2
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 2.6e-75 286.6 303 56.8
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 2.6e-75 286.6 345 49.9
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 5.7e-75 285.4 344 51.2
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 5.7e-75 285.4 345 48.1
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 5.4e-73 278.9 343 51.3
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 9.2e-73 278.1 341 51.9
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 1.3e-71 274.2 345 48.4
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 2.1e-69 266.9 262 59.2
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.1e-68 264.6 324 50.0
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 1.8e-68 263.8 282 57.8
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 3.4e-67 259.6 281 56.6
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 1.3e-66 257.7 293 55.3
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 3.7e-66 256.1 224 66.1
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 3.7e-66 256.1 300 54.3
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 3.9e-63 246.1 289 50.5
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 1.5e-62 244.2 345 46.1
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 1.4e-60 237.7 288 49.0
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 4.1e-57 226.1 356 44.7
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 2.1e-56 223.8 321 44.9
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 1.3e-55 221.1 340 40.9
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 1.3e-55 221.1 354 43.8
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 1.7e-55 220.7 350 38.9
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 2.5e-54 216.9 138 87.7
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 2.9e-50 203.4 345 37.7
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 4.1e-49 199.5 296 44.6
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 2.3e-47 193.7 239 51.0
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.2e-43 181.4 148 67.6
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 1.3e-42 177.9 158 66.5
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 2.2e-42 177.2 139 69.8
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 4.2e-41 172.9 304 43.8
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 1.9e-38 164.1 185 48.1
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 4.3e-38 162.9 175 56.0
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 3.5e-32 143.3 321 36.4
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 7.9e-32 142.1 321 36.4
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 1.1e-25 121.7 145 53.8
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 3.2e-25 120.2 289 36.0
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 2.8e-21 107.1 311 32.2
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 2.8e-21 107.1 311 32.2
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 9.3e-17 92.0 91 61.5
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 3.3e-14 83.6 55 80.0
BraA09t36810Z Brassica rapa HOM05D001533 ORTHO05D019802 2.8e-13 80.5 111 50.5
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 3.7e-13 80.1 289 30.1
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 6.3e-13 79.3 54 75.9
BolC9t54258H Brassica oleracea HOM05D001533 ORTHO05D019802 3.0e-07 60.5 95 46.3
BcaC04g22938 Brassica carinata HOM05D001533 ORTHO05D019802 7.4e-06 55.8 89 42.7


User provided reference genes

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