Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g026410.3 Solanum lycopersicum HOM05D002077 ORTHO05D000818 3.0e-96 355.5 229 100.0
PGSC0003DMG401014331 Solanum tuberosum HOM05D002077 ORTHO05D000818 4.1e-37 159.1 212 48.1
Sopen03g004750 Solanum pennellii HOM05D002077 ORTHO05D000818 1.5e-34 150.6 212 46.2
Solyc03g025930.4 Solanum lycopersicum HOM05D002077 ORTHO05D000818 1.9e-34 150.2 212 46.2
PGSC0003DMG400014329 Solanum tuberosum HOM05D002077 ORTHO05D000818 3.9e-27 125.9 212 40.6
PGSC0003DMG400030222 Solanum tuberosum HOM05D002077 ORTHO05D000818 4.7e-25 119.0 212 38.2
Solyc03g025940.3 Solanum lycopersicum HOM05D002077 ORTHO05D000818 2.3e-24 116.7 212 38.2
PGSC0003DMG401014333 Solanum tuberosum HOM05D002077 ORTHO05D000818 4.0e-24 115.9 80 73.8
Sopen03g004760 Solanum pennellii HOM05D002077 ORTHO05D000818 1.2e-23 114.4 212 37.7
PGSC0003DMG400043692 Solanum tuberosum HOM05D002077 ORTHO05D000818 2.0e-23 113.6 218 35.8
PGSC0003DMG402014331 Solanum tuberosum HOM05D002077 ORTHO05D000818 2.0e-23 113.6 142 47.2
Dinv28453 Davidia involucrata HOM05D002077 ORTHO05D000818 9.2e-21 104.8 142 45.1
Rhsim03G0179600 Rhododendron simsii HOM05D002077 ORTHO05D000818 3.5e-20 102.8 142 44.4
Actinidia34102 Actinidia chinensis HOM05D002077 ORTHO05D000818 7.8e-20 101.7 142 43.7
Manes.06G146400 Manihot esculenta HOM05D002077 ORTHO05D000818 1.0e-19 101.3 142 43.0
COL.COLO4_14296 Corchorus olitorius HOM05D002077 ORTHO05D000818 1.3e-19 100.9 142 42.3
Prupe.2G293200 Prunus persica HOM05D002077 ORTHO05D000818 2.3e-19 100.1 142 40.8
Solyc03g025920.4 Solanum lycopersicum HOM05D002077 ORTHO05D000818 3.0e-19 99.8 199 35.7
Sopen03g004730 Solanum pennellii HOM05D002077 ORTHO05D000818 3.0e-19 99.8 199 35.7
FAN03G1828 Fragaria x ananassa HOM05D002077 ORTHO05D006729 6.6e-19 98.6 142 41.5
Hma1.2p1_2482F.1_g323020 Hydrangea macrophylla HOM05D002077 ORTHO05D000818 8.6e-19 98.2 142 43.0
Thecc.03G175300 Theobroma cacao HOM05D002077 ORTHO05D000818 8.6e-19 98.2 142 40.8
Cc02_g03120 Coffea canephora HOM05D002077 ORTHO05D000818 1.1e-18 97.8 142 43.0
Lsat_1_v5_gn_2_131821 Lactuca sativa HOM05D002077 ORTHO05D000818 1.1e-18 97.8 142 41.5
RcHm_v2.0_Chr1g0377111 Rosa chinensis HOM05D002077 ORTHO05D000818 1.5e-18 97.4 142 40.1
PGSC0003DMG403014333 Solanum tuberosum HOM05D002077 ORTHO05D000818 1.5e-18 97.4 199 35.2
Haze_13726 Corylus avellana HOM05D002077 ORTHO05D000818 1.9e-18 97.1 142 43.0
Dinv35206 Davidia involucrata HOM05D002077 ORTHO05D000818 1.9e-18 97.1 142 42.3
TWI14G1216 Tripterygium wilfordii HOM05D002077 ORTHO05D000818 1.9e-18 97.1 142 40.8
Atru.chr1.476 Acer truncatum HOM05D002077 ORTHO05D000818 2.5e-18 96.7 142 40.8
CiPaw.03G105400 Carya illinoinensis HOM05D002077 ORTHO05D000818 2.5e-18 96.7 142 41.5
FvH4_7g29350 Fragaria vesca HOM05D002077 ORTHO05D000818 2.5e-18 96.7 142 40.8
FAN06G1288 Fragaria x ananassa HOM05D002077 ORTHO05D006729 2.5e-18 96.7 142 40.8
FAN06G1718 Fragaria x ananassa HOM05D002077 ORTHO05D006729 2.5e-18 96.7 142 40.8
SGA_v2.0_scaffold10G05344 Striga asiatica HOM05D002077 ORTHO05D000818 2.5e-18 96.7 142 39.4
Ciclev10005501m.g Citrus clementina HOM05D002077 ORTHO05D000818 3.3e-18 96.3 142 40.8
Lj8A25T67 Lonicera japonica HOM05D002077 ORTHO05D000818 4.3e-18 95.9 142 42.3
Nitab4.5_0000716g0180 Nicotiana tabacum HOM05D002077 ORTHO05D000818 4.3e-18 95.9 142 41.5
HanXRQChr15g0495591 Helianthus annuus HOM05D002077 ORTHO05D000818 5.6e-18 95.5 142 41.5
Cfa008309 Carpinus fangiana HOM05D002077 ORTHO05D000818 7.3e-18 95.1 142 42.3
Medtr1g100697 Medicago truncatula HOM05D002077 ORTHO05D000818 7.3e-18 95.1 142 40.8
TPR.G14327 Trifolium pratense HOM05D002077 ORTHO05D000818 9.6e-18 94.7 142 40.8
FAN01G1848 Fragaria x ananassa HOM05D002077 ORTHO05D000818 1.2e-17 94.4 141 41.1
Hma1.2p1_3140F.1_g333050 Hydrangea macrophylla HOM05D002077 ORTHO05D000818 1.2e-17 94.4 142 42.3
QL09p014520 Quercus lobata HOM05D002077 ORTHO05D000818 1.2e-17 94.4 142 39.4
Glyma.10G236900 Glycine max HOM05D002077 ORTHO05D000818 1.6e-17 94.0 142 40.8
Peaxi162Scf00915g00025 Petunia axillaris HOM05D002077 ORTHO05D000818 1.6e-17 94.0 142 40.8
HanXRQChr07g0207061 Helianthus annuus HOM05D002077 ORTHO05D000818 2.1e-17 93.6 67 68.7
Nitab4.5_0003365g0050 Nicotiana tabacum HOM05D002077 ORTHO05D000818 2.1e-17 93.6 142 40.8
Phvul.007G069000 Phaseolus vulgaris HOM05D002077 ORTHO05D000818 2.1e-17 93.6 142 41.5
arahy.Tifrunner.gnm1.ann1.6H6H67 Arachis hypogaea HOM05D002077 ORTHO05D000818 2.8e-17 93.2 142 40.1
arahy.Tifrunner.gnm1.ann1.KCRD8X Arachis hypogaea HOM05D002077 ORTHO05D000818 2.8e-17 93.2 142 40.1
Glyma.20G157500 Glycine max HOM05D002077 ORTHO05D000818 2.8e-17 93.2 142 40.1
Eucgr.A02798 Eucalyptus grandis HOM05D002077 ORTHO05D000818 6.2e-17 92.0 142 39.4
GSVIVG01010544001 Vitis vinifera HOM05D002077 ORTHO05D000818 6.2e-17 92.0 142 38.7
THA.LOC104824394 Tarenaya hassleriana HOM05D002077 ORTHO05D000818 8.1e-17 91.7 142 38.7
Ca_10779_v3 Cicer arietinum L. HOM05D002077 ORTHO05D000818 1.1e-16 91.3 142 39.4
Medtr1g100707 Medicago truncatula HOM05D002077 ORTHO05D000818 1.1e-16 91.3 142 39.4
vmacro06694 Vaccinium macrocarpon HOM05D002077 ORTHO05D000818 1.1e-16 91.3 142 40.1
Aa31LG4G17390 Aethionema arabicum HOM05D002077 ORTHO05D000818 1.4e-16 90.9 142 37.3
ECA238G3926 Erigeron canadensis HOM05D002077 ORTHO05D000818 1.4e-16 90.9 142 38.0
Duzib205G0590 Durio zibethinus HOM05D002077 ORTHO05D000818 1.8e-16 90.5 142 38.0
ECA232G3548 Erigeron canadensis HOM05D002077 ORTHO05D000818 2.4e-16 90.1 142 38.0
VMungo0720G0161 Vigna mungo HOM05D002077 ORTHO05D000818 2.4e-16 90.1 143 41.3
Lj5g0027705 Lotus japonicus HOM05D002077 ORTHO05D000818 3.1e-16 89.7 142 38.0
CAN.G913.3 Capsicum annuum HOM05D002077 ORTHO05D000818 5.2e-16 89.0 142 39.4
Eucgr.A02799 Eucalyptus grandis HOM05D002077 ORTHO05D000818 5.2e-16 89.0 141 39.0
Gohir.A09G041000 Gossypium hirsutum HOM05D002077 ORTHO05D000818 5.2e-16 89.0 142 37.3
Lalb_Chr06g0161071 Lupinus albus HOM05D002077 ORTHO05D000818 5.2e-16 89.0 142 39.4
AL5G28390 Arabidopsis lyrata HOM05D002077 ORTHO05D000818 6.8e-16 88.6 142 36.6
AT3G48880 Arabidopsis thaliana HOM05D002077 ORTHO05D000818 6.8e-16 88.6 142 36.6
Thhalv10010519m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 6.8e-16 88.6 142 36.6
Gohir.D09G041900 Gossypium hirsutum HOM05D002077 ORTHO05D000818 6.8e-16 88.6 142 37.3
Gorai.006G048100 Gossypium raimondii HOM05D002077 ORTHO05D000818 6.8e-16 88.6 142 37.3
Psat6g199880 Pisum sativum HOM05D002077 ORTHO05D000818 8.9e-16 88.2 142 38.7
Solyc03g096620.3 Solanum lycopersicum HOM05D002077 ORTHO05D000818 8.9e-16 88.2 142 49.3
Solyc06g009250.2 Solanum lycopersicum HOM05D002077 ORTHO05D000818 1.2e-15 87.8 105 52.4
Carub.0005s1505 Capsella rubella HOM05D002077 ORTHO05D000818 2.6e-15 86.7 142 35.9
BcaB05g22980 Brassica carinata HOM05D002077 ORTHO05D000818 3.4e-15 86.3 142 35.2
Migut.F01126 Erythranthe guttata HOM05D002077 ORTHO05D000818 3.4e-15 86.3 142 35.9
Oeu021781.1 Olea europaea HOM05D002077 ORTHO05D000818 3.4e-15 86.3 146 39.0
Sp5g13170 Schrenkiella parvula HOM05D002077 ORTHO05D000818 4.4e-15 85.9 142 35.9
Potri.012G137700 Populus trichocarpa HOM05D002077 ORTHO05D000818 5.8e-15 85.5 142 37.3
SalBow2G3420 Salvia bowleyana HOM05D002077 ORTHO05D000818 7.6e-15 85.1 142 36.6
CSS0046422 Camellia sinensis var. sinensis HOM05D002077 ORTHO05D000818 9.9e-15 84.7 62 67.7
CAN.G1154.4 Capsicum annuum HOM05D002077 ORTHO05D000818 9.9e-15 84.7 66 68.2
BcaC09g49912 Brassica carinata HOM05D002077 ORTHO05D000818 1.3e-14 84.3 142 34.5
A01p25170 Brassica napus HOM05D002077 ORTHO05D000818 1.3e-14 84.3 142 34.5
BolC1t03074H Brassica oleracea HOM05D002077 ORTHO05D000818 1.3e-14 84.3 142 34.5
BraA01t02425Z Brassica rapa HOM05D002077 ORTHO05D000818 1.3e-14 84.3 142 34.5
BcaC07g39363 Brassica carinata HOM05D002077 ORTHO05D000818 2.2e-14 83.6 142 35.9
C01p31370 Brassica napus HOM05D002077 ORTHO05D000818 2.9e-14 83.2 142 33.8
Cpa.g.sc107.40 Carica papaya HOM05D002077 ORTHO05D000818 4.9e-14 82.4 135 40.0
CARHR157690 Cardamine hirsuta HOM05D002077 ORTHO05D000818 6.4e-14 82.0 142 33.8
PSO063G0361 Papaver somniferum HOM05D002077 ORTHO05D000818 8.4e-14 81.6 142 36.6
PSO782G4919 Papaver somniferum HOM05D002077 ORTHO05D000818 8.4e-14 81.6 142 36.6
DCAR_009358 Daucus carota HOM05D002077 ORTHO05D000818 1.1e-13 81.3 142 36.6
MD01G1199600 Malus domestica HOM05D002077 ORTHO05D000818 1.1e-13 81.3 142 35.2
Potri.015G139700 Populus trichocarpa HOM05D002077 ORTHO05D000818 1.1e-13 81.3 142 36.6
C08p23850 Brassica napus HOM05D002077 ORTHO05D000818 1.4e-13 80.9 142 35.2
BolC8t50011H Brassica oleracea HOM05D002077 ORTHO05D000818 1.4e-13 80.9 142 35.2
Sabra15G0150400 Salix brachista HOM05D002077 ORTHO05D000818 1.4e-13 80.9 142 35.9
Aa31LG11G3080 Aethionema arabicum HOM05D002077 ORTHO05D000818 3.2e-13 79.7 143 33.6
TAR636G1697 Trochodendron aralioides HOM05D002077 ORTHO05D000818 3.2e-13 79.7 142 35.2
RcHm_v2.0_Chr1g0377091 Rosa chinensis HOM05D002077 ORTHO05D000818 4.2e-13 79.3 67 59.7
CSS0043143 Camellia sinensis var. sinensis HOM05D002077 ORTHO05D000818 5.4e-13 79.0 142 37.3
FvH4_7g29340 Fragaria vesca HOM05D002077 ORTHO05D000818 9.3e-13 78.2 66 59.1
FAN10G4305 Fragaria x ananassa HOM05D002077 ORTHO05D000818 9.3e-13 78.2 66 59.1
Nn1g01424 Nelumbo nucifera HOM05D002077 ORTHO05D000818 1.2e-12 77.8 142 33.1
A06p18870 Brassica napus HOM05D002077 ORTHO05D000818 1.0e-11 74.7 67 52.2
MBI18_g44743_MAGBIO Magnolia biondii HOM05D002077 ORTHO05D000818 1.0e-11 74.7 142 33.1
FAN03G0915 Fragaria x ananassa HOM05D002077 ORTHO05D000818 1.3e-11 74.3 66 56.1
Solyc01g150123.1 Solanum lycopersicum HOM05D002077 ORTHO05D000818 3.0e-11 73.2 52 63.5
PGR042G3255 Punica granatum HOM05D002077 ORTHO05D000818 3.9e-11 72.8 67 53.7
BcaB01g00773 Brassica carinata HOM05D002077 ORTHO05D000818 5.1e-11 72.4 142 32.4
Sp2g23500 Schrenkiella parvula HOM05D002077 ORTHO05D000818 6.6e-11 72.0 67 50.7
Thhalv10005418m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 7.3e-10 68.6 143 32.2
Os10g0502900 Oryza sativa ssp. japonica HOM05D002077 ORTHO05D000818 2.1e-09 67.0 142 30.3
HPP92_008435 Vanilla planifolia HOM05D002077 ORTHO05D000818 8.1e-09 65.1 67 41.8
HPP92_008461 Vanilla planifolia HOM05D002077 ORTHO05D000818 8.1e-09 65.1 67 41.8
Zm00001eb044180 Zea mays HOM05D002077 ORTHO05D000818 1.4e-08 64.3 142 30.3
Aqoxy5G03957 Aquilegia oxysepala HOM05D002077 ORTHO05D000818 1.8e-08 63.9 142 28.2
RcHm_v2.0_Chr1g0377061 Rosa chinensis HOM05D002077 ORTHO05D000818 2.4e-08 63.5 67 43.3
Aqoxy3G02725 Aquilegia oxysepala HOM05D002077 ORTHO05D000818 1.5e-07 60.8 66 45.5
Thhalv10015761m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 1.5e-07 60.8 142 27.5
Prupe.2G293100 Prunus persica HOM05D002077 ORTHO05D000818 1.5e-07 60.8 67 50.7
TPR.G14336 Trifolium pratense HOM05D002077 ORTHO05D000818 2.6e-07 60.1 67 43.3
Medtr1g100713 Medicago truncatula HOM05D002077 ORTHO05D000818 3.4e-07 59.7 67 44.8
Solyc03g062810.1 Solanum lycopersicum HOM05D002077 ORTHO05D000818 3.4e-07 59.7 162 30.2
RcHm_v2.0_Chr1g0377081 Rosa chinensis HOM05D002077 ORTHO05D000818 1.3e-06 57.8 61 44.3
TPR.G34129 Trifolium pratense HOM05D002077 ORTHO05D000818 1.3e-06 57.8 67 43.3
MD07G1267400 Malus domestica HOM05D002077 ORTHO05D000818 1.7e-06 57.4 67 47.8
Medtr4g099030 Medicago truncatula HOM05D002077 ORTHO05D000818 1.7e-06 57.4 67 40.3
Thhalv10015508m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 2.9e-06 56.6 143 26.6
Psat7g237160 Pisum sativum HOM05D002077 ORTHO05D000818 3.8e-06 56.2 67 40.3
Hma1.2p1_2094F.1_g313920 Hydrangea macrophylla HOM05D002077 ORTHO05D000818 4.9e-06 55.8 142 31.7
Thhalv10005421m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 8.4e-06 55.1 67 41.8
Thhalv10016006m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 8.4e-06 55.1 143 27.3
Medtr0013s0100 Medicago truncatula HOM05D002077 ORTHO05D000818 8.4e-06 55.1 67 43.3


User provided reference genes

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