Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g026200.4 Solanum lycopersicum HOM05D005908 ORTHO05D007235 1.3e-168 596.3 301 100.0
Sopen03g005070 Solanum pennellii HOM05D005908 ORTHO05D007235 2.3e-165 585.5 301 98.3
PGSC0003DMG402014313 Solanum tuberosum HOM05D005908 ORTHO05D007235 3.0e-160 568.5 299 96.0
CAN.G548.2 Capsicum annuum HOM05D005908 ORTHO05D007235 1.0e-144 516.9 298 86.2
Nitab4.5_0005024g0020 Nicotiana tabacum HOM05D005908 ORTHO05D007235 6.9e-117 424.5 296 75.7
Nitab4.5_0001083g0110 Nicotiana tabacum HOM05D005908 ORTHO05D007235 5.1e-112 408.3 319 69.0
Peaxi162Scf00915g00250 Petunia axillaris HOM05D005908 ORTHO05D007235 5.0e-99 365.2 315 64.4
Dinv35179 Davidia involucrata HOM05D005908 ORTHO05D007235 2.7e-97 359.4 295 62.0
Lj1A993G71 Lonicera japonica HOM05D005908 ORTHO05D007235 7.0e-93 344.7 302 59.6
Actinidia32893 Actinidia chinensis HOM05D005908 ORTHO05D007235 2.9e-91 339.3 295 58.6
Hma1.2p1_0270F.1_g108430 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 2.5e-90 336.3 252 63.1
Cc10_g10330 Coffea canephora HOM05D005908 ORTHO05D007235 4.2e-90 335.5 296 59.8
vmacro08977 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 4.2e-90 335.5 266 62.4
Nn6g34248 Nelumbo nucifera HOM05D005908 ORTHO05D007235 1.6e-89 333.6 266 62.8
GSVIVG01010617001 Vitis vinifera HOM05D005908 ORTHO05D007235 6.1e-89 331.6 286 59.1
QL09p014976 Quercus lobata HOM05D005908 ORTHO05D007235 8.0e-89 331.3 271 59.4
TAR375G0795 Trochodendron aralioides HOM05D005908 ORTHO05D007235 2.3e-88 329.7 293 59.0
CiPaw.04G067300 Carya illinoinensis HOM05D005908 ORTHO05D007235 3.3e-87 325.9 284 57.7
MSTRG.8762 Avicennia marina HOM05D005908 ORTHO05D007235 9.7e-87 324.3 294 56.5
Sed0015226 Sechium edule HOM05D005908 ORTHO05D007235 2.8e-86 322.8 264 61.0
Potri.015G138400 Populus trichocarpa HOM05D005908 ORTHO05D007235 3.7e-86 322.4 271 57.2
Oeu030124.1 Olea europaea HOM05D005908 ORTHO05D007235 1.1e-85 320.9 244 63.9
Sabra15G0149500 Salix brachista HOM05D005908 ORTHO05D007235 2.4e-85 319.7 271 57.2
DCAR_009351 Daucus carota HOM05D005908 ORTHO05D007235 3.1e-85 319.3 258 61.2
Aqoxy7G00441 Aquilegia oxysepala HOM05D005908 ORTHO05D007235 4.1e-85 318.9 273 62.3
CANSAT21G0021 Cannabis sativa HOM05D005908 ORTHO05D007235 1.2e-84 317.4 275 57.8
Atru.chr1.515 Acer truncatum HOM05D005908 ORTHO05D007235 7.7e-84 314.7 270 59.3
CANSAT21G0323 Cannabis sativa HOM05D005908 ORTHO05D007235 1.0e-83 314.3 275 57.1
ClCG05G007830 Citrullus lanatus HOM05D005908 ORTHO05D007235 1.7e-83 313.5 291 55.7
FAN03G0397 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.9e-83 312.8 281 58.4
Lsat_1_v5_gn_2_133120 Lactuca sativa HOM05D005908 ORTHO05D007235 3.8e-83 312.4 296 56.1
TWI23G0151 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 3.8e-83 312.4 258 58.5
Ciclev10005584m.g Citrus clementina HOM05D005908 ORTHO05D007235 5.0e-83 312.0 270 58.9
FvH4_7g15530 Fragaria vesca HOM05D005908 ORTHO05D007235 8.5e-83 311.2 263 59.7
FAN06G2086 Fragaria x ananassa HOM05D005908 ORTHO05D007235 8.5e-83 311.2 263 59.7
FAN10G2728 Fragaria x ananassa HOM05D005908 ORTHO05D007235 8.5e-83 311.2 263 59.7
CsaV3_3G016830 Cucumis sativus L. HOM05D005908 ORTHO05D007235 1.1e-82 310.8 288 55.2
FAN06G0652 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.1e-82 310.8 263 59.7
Manes.06G144000 Manihot esculenta HOM05D005908 ORTHO05D007235 1.1e-82 310.8 269 58.7
Rhsim04G0117700 Rhododendron simsii HOM05D005908 ORTHO05D007235 1.1e-82 310.8 325 51.7
MD13G1243600 Malus domestica HOM05D005908 ORTHO05D007235 1.9e-82 310.1 273 57.9
RcHm_v2.0_Chr1g0376741 Rosa chinensis HOM05D005908 ORTHO05D007235 1.9e-82 310.1 271 59.4
SalBow1G0690 Salvia bowleyana HOM05D005908 ORTHO05D007235 4.2e-82 308.9 251 60.6
vmacro06719 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 4.2e-82 308.9 275 56.7
Cfa008281 Carpinus fangiana HOM05D005908 ORTHO05D007235 5.5e-82 308.5 227 64.3
TWI39G0968 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 7.2e-82 308.1 274 54.7
FAN01G2408 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.1e-81 306.6 278 57.6
Eucgr.K00226 Eucalyptus grandis HOM05D005908 ORTHO05D007235 4.7e-81 305.4 271 57.9
FAN10G3232 Fragaria x ananassa HOM05D005908 ORTHO05D007235 6.1e-81 305.1 263 58.6
VMungo0464G0636 Vigna mungo HOM05D005908 ORTHO05D007235 6.1e-81 305.1 264 57.6
HanXRQChr07g0206851 Helianthus annuus HOM05D005908 ORTHO05D007235 8.0e-81 304.7 298 55.0
Carub.0008s1219 Capsella rubella HOM05D005908 ORTHO05D007235 1.8e-80 303.5 263 60.1
Sp6g14360 Schrenkiella parvula HOM05D005908 ORTHO05D007235 1.8e-80 303.5 261 60.2
SpUn0060_0050 Schrenkiella parvula HOM05D005908 ORTHO05D007235 1.8e-80 303.5 261 60.2
AT5G52110 Arabidopsis thaliana HOM05D005908 ORTHO05D007235 2.3e-80 303.1 264 58.7
Aa31LG3G8480 Aethionema arabicum HOM05D005908 ORTHO05D007235 3.0e-80 302.8 276 56.9
BraA03t10874Z Brassica rapa HOM05D005908 ORTHO05D007235 3.0e-80 302.8 269 58.0
MBI12_g29759_MAGBIO Magnolia biondii HOM05D005908 ORTHO05D007235 3.0e-80 302.8 267 56.6
AL8G26480 Arabidopsis lyrata HOM05D005908 ORTHO05D007235 4.0e-80 302.4 264 59.5
A03p15840 Brassica napus HOM05D005908 ORTHO05D007235 4.0e-80 302.4 269 58.0
CARHR265040 Cardamine hirsuta HOM05D005908 ORTHO05D007235 4.0e-80 302.4 258 60.5
ECA238G1518 Erigeron canadensis HOM05D005908 ORTHO05D007235 1.2e-79 300.8 266 58.3
Migut.F00374 Erythranthe guttata HOM05D005908 ORTHO05D007235 1.5e-79 300.4 297 55.6
PSO782G1770 Papaver somniferum HOM05D005908 ORTHO05D007235 1.5e-79 300.4 255 58.0
SGA_v2.0_scaffold2G01076 Striga asiatica HOM05D005908 ORTHO05D007235 2.6e-79 299.7 316 51.9
THA.LOC104811995 Tarenaya hassleriana HOM05D005908 ORTHO05D007235 1.3e-78 297.4 274 56.2
TPR.G5821 Trifolium pratense HOM05D005908 ORTHO05D007235 2.2e-78 296.6 292 52.4
Glyma.16G198400 Glycine max HOM05D005908 ORTHO05D007235 2.8e-78 296.2 278 54.7
Lalb_Chr01g0009141 Lupinus albus HOM05D005908 ORTHO05D007235 2.8e-78 296.2 264 56.8
BcaC01g06164 Brassica carinata HOM05D005908 ORTHO05D007235 4.8e-78 295.4 268 57.5
C03p18500 Brassica napus HOM05D005908 ORTHO05D007235 4.8e-78 295.4 268 57.5
BolC3t14247H Brassica oleracea HOM05D005908 ORTHO05D007235 4.8e-78 295.4 268 57.5
PSO478G3277 Papaver somniferum HOM05D005908 ORTHO05D007235 4.8e-78 295.4 295 52.9
Thhalv10014339m.g Eutrema salsugineum HOM05D005908 ORTHO05D007235 1.1e-77 294.3 270 56.3
Gohir.D09G040800 Gossypium hirsutum HOM05D005908 ORTHO05D007235 1.8e-77 293.5 253 58.1
Gorai.006G046700 Gossypium raimondii HOM05D005908 ORTHO05D007235 3.1e-77 292.7 257 57.2
BcaB01g04184 Brassica carinata HOM05D005908 ORTHO05D007235 9.1e-77 291.2 267 56.2
COL.COLO4_14265 Corchorus olitorius HOM05D005908 ORTHO05D007235 1.6e-76 290.4 242 59.1
Thecc.03G170900 Theobroma cacao HOM05D005908 ORTHO05D007235 2.0e-76 290.0 238 59.2
Cpa.g.sc107.9 Carica papaya HOM05D005908 ORTHO05D007235 3.5e-76 289.3 265 57.4
Hma1.2p1_0270F.1_g108420 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 5.9e-76 288.5 297 51.9
arahy.Tifrunner.gnm1.ann1.580JC2 Arachis hypogaea HOM05D005908 ORTHO05D007235 2.3e-75 286.6 279 54.1
Psat1g113160 Pisum sativum HOM05D005908 ORTHO05D007235 6.6e-75 285.0 297 52.2
Ah.13g068320 Amaranthus hybridus HOM05D005908 ORTHO05D007235 4.2e-74 282.3 286 52.4
arahy.Tifrunner.gnm1.ann1.K8NCYF Arachis hypogaea HOM05D005908 ORTHO05D007235 4.2e-74 282.3 279 53.8
Lj4g0016789 Lotus japonicus HOM05D005908 ORTHO05D007235 3.6e-73 279.3 263 52.5
Lj2g0007665 Lotus japonicus HOM05D005908 ORTHO05D007235 1.4e-72 277.3 263 52.1
Prupe.1G077000 Prunus persica HOM05D005908 ORTHO05D007235 2.3e-72 276.6 274 51.5
Lj2g0024281 Lotus japonicus HOM05D005908 ORTHO05D007235 4.0e-72 275.8 263 52.1
Hund04705 Selenicereus undatus HOM05D005908 ORTHO05D007235 8.9e-72 274.6 270 54.4
AUR62016029 Chenopodium quinoa HOM05D005908 ORTHO05D007235 2.6e-71 273.1 264 54.9
Sc25g0000390 Simmondsia chinensis HOM05D005908 ORTHO05D007235 1.1e-69 267.7 268 52.6
Haze_13753 Corylus avellana HOM05D005908 ORTHO05D007235 5.6e-66 255.4 219 59.4
Zm00001eb021390 Zea mays HOM05D005908 ORTHO05D007235 1.6e-65 253.8 263 49.4
ATR0757G107 Amborella trichopoda HOM05D005908 ORTHO05D007235 1.2e-63 247.7 232 53.9
Phvul.004G121600 Phaseolus vulgaris HOM05D005908 ORTHO05D007235 5.4e-61 238.8 179 63.7
CDE11G0458 Ceratophyllum demersum HOM05D003547 ORTHO05D004236 1.2e-60 237.7 234 48.7
HPP92_001363 Vanilla planifolia HOM05D005908 ORTHO05D007235 3.5e-60 236.1 240 51.2
AUR62021234 Chenopodium quinoa HOM05D005908 ORTHO05D007235 1.3e-59 234.2 226 54.9
Gohir.A09G040000 Gossypium hirsutum HOM05D005908 ORTHO05D007235 8.6e-59 231.5 205 58.5
EL10Ac3g05695 Beta vulgaris HOM05D005908 ORTHO05D007235 4.0e-56 222.6 205 55.6
vmacro06721 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 4.1e-53 212.6 244 48.0
MELO3C006877.2 Cucumis melo HOM05D005908 ORTHO05D007235 2.3e-51 206.8 290 43.1
SEGI_20513 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 4.4e-47 192.6 243 44.4
unitig_37.g11958 Utricularia gibba HOM05D005908 ORTHO05D007235 2.7e-44 183.3 189 47.6
HPP92_001354 Vanilla planifolia HOM05D005908 ORTHO05D007235 2.5e-42 176.8 242 43.8
Mapoly0051s0108 Marchantia polymorpha HOM05D005908 ORTHO05D007235 2.9e-38 163.3 239 39.3
Lsat_1_v5_gn_2_133160 Lactuca sativa HOM05D005908 ORTHO05D007235 1.9e-34 150.6 154 55.2
Pp3c13_15400 Physcomitrium patens HOM05D005908 ORTHO05D007235 1.2e-31 141.4 271 31.0
AagrBONN_evm.TU.Sc2ySwM_228.723 Anthoceros agrestis HOM05D005908 ORTHO05D007235 1.5e-31 141.0 237 35.4
CSS0026196 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 1.5e-31 141.0 99 62.6
CSS0048064 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 1.5e-31 141.0 99 62.6
CSS0007682 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 1.1e-29 134.8 137 56.2
FAN03G2347 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.1e-28 130.6 153 50.3
Actinidia34081 Actinidia chinensis HOM05D005908 ORTHO05D007235 2.7e-28 130.2 146 47.9
FAN03G3234 Fragaria x ananassa HOM05D005908 ORTHO05D007235 3.9e-27 126.3 149 49.0
SMO364G0827 Selaginella moellendorffii HOM05D005908 ORTHO05D007235 3.3e-26 123.2 237 34.6
Dinv28477 Davidia involucrata HOM05D005908 ORTHO05D007235 2.8e-25 120.2 100 66.0
SEGI_01877 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 2.8e-25 120.2 130 50.8
MCO01G567 Micromonas commoda HOM05D005908 ORTHO05D007235 2.7e-20 103.6 248 29.4
SMO353G0077 Selaginella moellendorffii HOM05D005908 ORTHO05D007235 1.3e-19 101.3 267 30.7
Cre12.g537850 Chlamydomonas reinhardtii HOM05D005908 ORTHO05D007235 1.8e-19 100.9 323 27.2
CBR_g58789 Chara braunii HOM05D005908 ORTHO05D007235 7.4e-18 95.5 147 37.4
FAN01G0300 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.2e-14 84.0 102 44.1
FvH4_7g29023 Fragaria vesca HOM05D005908 ORTHO05D007235 1.4e-13 81.3 66 60.6
MELO3C031805.2 Cucumis melo HOM05D005908 ORTHO05D007235 7.1e-13 79.0 68 51.5
MD16G1250200 Malus domestica HOM05D005908 ORTHO05D007235 2.7e-12 77.0 76 50.0
Hma1.2p1_0010F.1_g006900 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 1.0e-11 75.1 58 60.3
Os10g0522500 Oryza sativa ssp. japonica HOM05D005908 ORTHO05D007235 1.5e-10 71.2 51 70.6
MD12G1162900 Malus domestica HOM05D000067 ORTHO05D000097 2.9e-06 57.0 30 80.0


User provided reference genes

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