Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 0.0e+00 1189.5 660 100.0
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 6.3e-296 1020.4 683 85.2
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 5.5e-284 980.7 671 85.1
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 1.0e-165 587.8 693 58.0
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 2.2e-160 570.1 621 58.9
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 1.5e-156 557.4 726 58.1
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 2.4e-154 550.1 885 49.0
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 8.7e-72 275.8 415 47.2
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 1.3e-62 245.4 692 37.4
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 1.5e-55 221.9 352 46.0
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 4.3e-55 220.3 357 44.3
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 2.2e-54 218.0 337 44.8
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 2.8e-54 217.6 429 39.4
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 1.4e-53 215.3 365 43.6
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 1.8e-53 214.9 365 43.3
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 3.1e-53 214.2 389 41.1
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 4.5e-52 210.3 346 45.7
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 7.7e-52 209.5 395 43.5
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 7.2e-50 203.0 346 43.6
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 2.7e-49 201.1 326 42.9
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 1.0e-48 199.1 352 42.9
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 1.4e-48 198.7 324 43.2
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 5.1e-48 196.8 311 45.3
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 5.1e-48 196.8 357 41.5
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 1.5e-47 195.3 368 42.9
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 5.7e-47 193.4 351 41.3
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 1.7e-46 191.8 349 41.3
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 2.2e-46 191.4 366 41.0
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 2.0e-44 184.9 402 36.3
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 4.5e-44 183.7 417 36.0
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 4.2e-42 177.2 372 38.4
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 9.4e-42 176.0 735 30.3
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 1.6e-41 175.3 649 31.7
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 1.6e-41 175.3 409 37.9
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.1e-41 174.9 499 33.7
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.7e-41 174.5 752 29.7
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 4.7e-41 173.7 405 37.8
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 1.0e-40 172.6 344 39.0
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 6.7e-40 169.9 343 40.8
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 8.8e-40 169.5 703 34.1
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 5.7e-39 166.8 407 36.9
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 5.7e-39 166.8 407 36.9
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 7.4e-39 166.4 342 39.8
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 9.7e-39 166.0 373 38.1
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 1.6e-36 158.7 774 27.9
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 2.0e-36 158.3 317 39.7
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 1.7e-35 155.2 417 35.5
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 6.5e-35 153.3 359 35.4
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 1.1e-34 152.5 359 36.5
DCAR_018199 Daucus carota HOM05D004189 ORTHO05D004092 3.2e-34 151.0 438 32.6
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 7.2e-34 149.8 526 31.4
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 2.1e-33 148.3 506 31.2
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 4.7e-33 147.1 263 39.5
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 6.1e-33 146.7 294 40.1
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 2.3e-32 144.8 397 34.3
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 4.0e-32 144.1 393 36.1
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 5.2e-32 143.7 372 36.3
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.5e-31 142.1 736 28.3
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 2.0e-31 141.7 447 32.7
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 2.0e-31 141.7 408 33.1
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 3.3e-31 141.0 398 34.9
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 3.3e-31 141.0 449 33.6
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 4.4e-31 140.6 728 29.1
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 5.7e-31 140.2 481 34.3
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 7.5e-31 139.8 453 31.6
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 9.7e-31 139.4 427 35.4
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 9.7e-31 139.4 470 31.7
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 1.7e-30 138.7 329 35.9
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 2.2e-30 138.3 396 33.8
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 1.4e-29 135.6 344 36.9
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 3.1e-29 134.4 257 40.1
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 9.1e-29 132.9 751 29.8
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 1.2e-28 132.5 391 33.5
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 2.0e-28 131.7 358 35.8
FAN10G2376 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.7e-28 131.3 738 27.5
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 4.5e-28 130.6 358 35.8
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 7.7e-28 129.8 352 36.6
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 1.0e-27 129.4 355 36.3
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 2.2e-27 128.3 244 42.6
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 5.0e-27 127.1 386 32.1
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 6.5e-27 126.7 687 28.2
Nitab4.5_0003242g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 6.5e-27 126.7 349 31.8
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 8.5e-27 126.3 244 41.4
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 8.5e-27 126.3 371 33.4
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 1.1e-26 125.9 306 36.9
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 1.5e-26 125.6 363 32.5
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 1.9e-26 125.2 391 33.5
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 2.5e-26 124.8 205 45.4
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 3.2e-26 124.4 362 32.6
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.2e-26 124.0 368 33.2
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 4.2e-26 124.0 236 42.4
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 1.2e-25 122.5 238 41.6
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 1.2e-25 122.5 289 37.0
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 1.6e-25 122.1 249 39.0
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 4.7e-25 120.6 361 34.9
BcaB01g04200 Brassica carinata HOM05D004189 ORTHO05D004092 6.1e-25 120.2 462 31.4
GSVIVG01028976001 Vitis vinifera HOM05D004189 ORTHO05D004092 5.2e-24 117.1 228 40.8
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 6.8e-24 116.7 293 34.8
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 8.8e-24 116.3 369 32.0
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 2.6e-23 114.8 237 42.2
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 3.4e-23 114.4 442 29.4
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 4.4e-23 114.0 234 41.9
BcaC01g06182 Brassica carinata HOM05D004189 ORTHO05D004092 9.8e-23 112.8 445 29.2
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 9.8e-23 112.8 367 31.6
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 2.2e-22 111.7 338 32.2
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 4.8e-22 110.5 369 31.7
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 8.3e-22 109.8 450 31.1
BraA03t10863Z Brassica rapa HOM05D004189 ORTHO05D004092 2.4e-21 108.2 480 29.0
A03p15730 Brassica napus HOM05D004189 ORTHO05D004092 4.1e-21 107.5 474 28.5
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 1.6e-20 105.5 362 34.8
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 2.7e-20 104.8 351 31.9
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 4.5e-20 104.0 389 28.8
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 4.5e-20 104.0 416 29.8
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 5.9e-20 103.6 361 31.9
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 1.3e-19 102.4 369 31.2
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 2.3e-19 101.7 395 28.1
HanXRQChr06g0183811 Helianthus annuus HOM05D004189 ORTHO05D004092 2.3e-19 101.7 285 34.0
Nitab4.5_0002721g0060 Nicotiana tabacum HOM05D004189 ORTHO05D004092 5.0e-19 100.5 366 29.5
ClCG09G012920 Citrullus lanatus HOM05D004189 ORTHO05D004092 1.5e-18 99.0 357 29.4
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 4.2e-18 97.4 327 31.2
Ah.07g207200 Amaranthus hybridus HOM05D032681 ORTHO05D004092 9.5e-18 96.3 247 38.1
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 1.6e-17 95.5 274 32.1
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 2.8e-17 94.7 260 35.4
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 3.6e-17 94.4 329 31.3
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 4.7e-17 94.0 393 29.5
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 6.1e-17 93.6 354 29.4
SGA_v2.0_scaffold60G21043 Striga asiatica HOM05D004189 ORTHO05D004092 6.1e-17 93.6 327 30.3
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 1.0e-16 92.8 183 40.4
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 1.8e-16 92.0 686 28.1
PSO478G2886 Papaver somniferum HOM05D064671 ORTHO05D004092 2.0e-15 88.6 370 28.9
PSO782G3516 Papaver somniferum HOM05D064671 ORTHO05D004092 2.6e-15 88.2 366 29.2
MELO3C003321.2 Cucumis melo HOM05D004189 ORTHO05D004092 9.8e-15 86.3 344 30.5
Peaxi162Scf00234g00811 Petunia axillaris HOM05D004189 ORTHO05D004092 3.7e-14 84.3 358 27.7
BolC3t14234H Brassica oleracea HOM05D004189 ORTHO05D004092 1.1e-13 82.8 431 28.5
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 1.8e-13 82.0 371 28.0
Thhalv10015427m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 2.4e-13 81.6 340 30.9
FvH4_7g29480 Fragaria vesca HOM05D013146 ORTHO05D004092 1.2e-12 79.3 510 26.3
FAN06G3443 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.2e-12 79.3 492 27.6
Hund04742 Selenicereus undatus HOM05D004189 ORTHO05D004092 1.2e-12 79.3 216 33.8
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 2.0e-12 78.6 217 35.0
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 2.7e-12 78.2 192 35.9
C03p18370 Brassica napus HOM05D004189 ORTHO05D004092 4.5e-12 77.4 431 27.4
PSO782G3290 Papaver somniferum HOM05D057890 ORTHO05D004092 4.5e-12 77.4 313 31.9
CsaV3_3G049950 Cucumis sativus L. HOM05D004189 ORTHO05D004092 7.8e-12 76.6 235 32.3
CARHR265290 Cardamine hirsuta HOM05D004189 ORTHO05D004092 2.3e-11 75.1 234 34.6
Sp6g14580 Schrenkiella parvula HOM05D004189 ORTHO05D004092 2.9e-11 74.7 300 29.3
Glyma.16G192000 Glycine max HOM05D004189 ORTHO05D004092 5.0e-11 73.9 143 39.2
Glyma.16G183700 Glycine max HOM05D004189 ORTHO05D004092 1.1e-10 72.8 143 39.2
Sopen01g005170 Solanum pennellii HOM05D000155 ORTHO05D000022 1.5e-10 72.4 138 36.2
Glyma.16G192732 Glycine max HOM05D004189 ORTHO05D004092 1.9e-10 72.0 143 39.2
PGSC0003DMG400030008 Solanum tuberosum HOM05D004189 ORTHO05D004092 2.5e-10 71.6 121 40.5
Glyma.16G192200 Glycine max HOM05D004189 ORTHO05D004092 4.3e-10 70.9 143 38.5
CAN.G166.11 Capsicum annuum HOM05D004189 ORTHO05D004092 5.6e-10 70.5 337 24.9
A08p21090 Brassica napus HOM05D002154 ORTHO05D002362 3.6e-09 67.8 106 42.5
CARHR259130 Cardamine hirsuta HOM05D004189 ORTHO05D004092 3.6e-09 67.8 115 47.0
SalBow4G1950 Salvia bowleyana HOM05D026728 ORTHO05D004092 3.6e-09 67.8 663 23.2
Sed0019460 Sechium edule HOM05D004189 ORTHO05D004092 3.6e-09 67.8 411 28.2
Psat0s2227g0040 Pisum sativum HOM05D004189 ORTHO05D004092 4.7e-09 67.4 206 31.6
SalBow4G1418 Salvia bowleyana HOM05D026728 ORTHO05D004092 8.0e-09 66.6 362 26.8
Lalb_Chr21g0305031 Lupinus albus HOM05D004189 ORTHO05D004092 1.8e-08 65.5 176 33.5
Psat6g199400 Pisum sativum HOM05D004189 ORTHO05D004092 2.3e-08 65.1 336 26.5
Solyc01g009660.3 Solanum lycopersicum HOM05D004189 ORTHO05D004092 2.3e-08 65.1 143 36.4
BcaC07g38200 Brassica carinata HOM05D004189 ORTHO05D004092 5.2e-08 63.9 106 41.5
BolC8t48624H Brassica oleracea HOM05D004189 ORTHO05D004092 5.2e-08 63.9 106 41.5
BraA08t34059Z Brassica rapa HOM05D002154 ORTHO05D002362 5.2e-08 63.9 106 41.5
THA.LOC104799430 Tarenaya hassleriana HOM05D006297 ORTHO05D007873 6.8e-08 63.5 160 34.4
C08p09550 Brassica napus HOM05D002154 ORTHO05D002362 8.9e-08 63.2 106 41.5
SGA_v2.0_scaffold10G05341 Striga asiatica HOM05D026728 ORTHO05D004092 7.5e-07 60.1 59 49.2
PSO478G0660 Papaver somniferum HOM05D057890 ORTHO05D004092 1.3e-06 59.3 204 34.8
BcaB03g12476 Brassica carinata HOM05D002154 ORTHO05D002362 1.7e-06 58.9 77 44.2
SalBow2G2574 Salvia bowleyana HOM05D004189 ORTHO05D004092 1.7e-06 58.9 112 42.0
AL271U10030 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 2.2e-06 58.5 95 42.1
MBI05_g35633_MAGBIO Magnolia biondii HOM05D006297 ORTHO05D007873 2.2e-06 58.5 128 35.9
GSVIVG01031399001 Vitis vinifera HOM05D006297 ORTHO05D007873 2.9e-06 58.2 153 35.9
MBI17_g21975_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 3.7e-06 57.8 149 32.9
unitig_46.g18790 Utricularia gibba HOM05D004189 ORTHO05D004092 3.7e-06 57.8 328 27.7
ATR0559G346 Amborella trichopoda HOM05D006297 ORTHO05D007873 8.3e-06 56.6 75 44.0


User provided reference genes

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