Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g025740.4 Solanum lycopersicum HOM05D000368 ORTHO05D009348 1.3e-90 337.0 262 100.0
Sopen03g004560 Solanum pennellii HOM05D000368 ORTHO05D009348 3.1e-89 332.4 262 98.9
PGSC0003DMG402014344 Solanum tuberosum HOM05D000368 ORTHO05D009348 3.2e-86 322.4 262 96.6
Nitab4.5_0002117g0050 Nicotiana tabacum HOM05D000368 ORTHO05D009348 1.9e-54 216.9 294 63.3
Cc02_g02880 Coffea canephora HOM05D000368 ORTHO05D009348 5.8e-43 178.7 281 61.9
Sabra15G0154200 Salix brachista HOM05D000368 ORTHO05D009348 1.3e-42 177.6 279 69.9
Dinv35216 Davidia involucrata HOM05D000368 ORTHO05D000289 2.2e-42 176.8 282 64.5
Ah.13g068650 Amaranthus hybridus HOM05D000368 ORTHO05D009348 1.9e-41 173.7 275 60.7
Ciclev10005579m.g Citrus clementina HOM05D000368 ORTHO05D009348 1.9e-41 173.7 284 69.4
Rhsim09G0197900 Rhododendron simsii HOM05D000368 ORTHO05D009348 1.6e-40 170.6 275 66.9
AL8G26780 Arabidopsis lyrata HOM05D000368 ORTHO05D009348 4.6e-40 169.1 273 69.2
Carub.0008s1248 Capsella rubella HOM05D000368 ORTHO05D009348 7.8e-40 168.3 270 69.6
DCAR_020244 Daucus carota HOM05D000368 ORTHO05D009348 1.7e-39 167.2 260 70.0
Manes.14G025600 Manihot esculenta HOM05D000368 ORTHO05D009348 1.7e-39 167.2 276 69.9
HanXRQChr07g0207001 Helianthus annuus HOM05D000368 ORTHO05D009348 3.0e-39 166.4 277 65.3
Eucgr.K00263 Eucalyptus grandis HOM05D000368 ORTHO05D009348 3.9e-39 166.0 278 66.5
EL10Ac3g05631 Beta vulgaris HOM05D000368 ORTHO05D009348 8.6e-39 164.9 273 66.3
Hund11743 Selenicereus undatus HOM05D000368 ORTHO05D009348 1.5e-38 164.1 282 65.6
Potri.015G144600 Populus trichocarpa HOM05D000368 ORTHO05D009348 1.9e-38 163.7 281 68.0
ClCG05G008070 Citrullus lanatus HOM05D000368 ORTHO05D009348 2.5e-38 163.3 267 70.0
AT5G52380 Arabidopsis thaliana HOM05D000368 ORTHO05D009348 5.6e-38 162.2 273 66.7
ECA238G2658 Erigeron canadensis HOM05D000368 ORTHO05D000289 5.6e-38 162.2 272 68.0
Potri.012G141700 Populus trichocarpa HOM05D000368 ORTHO05D009348 1.2e-37 161.0 277 67.5
Prupe.2G295100 Prunus persica HOM05D000368 ORTHO05D009348 2.1e-37 160.2 277 59.2
MSTRG.8734 Avicennia marina HOM05D000368 ORTHO05D009348 3.6e-37 159.5 262 70.2
VMungo0720G3173 Vigna mungo HOM05D000368 ORTHO05D009348 3.6e-37 159.5 269 65.8
Aa31LG3G8750 Aethionema arabicum HOM05D000368 ORTHO05D009348 8.0e-37 158.3 277 64.3
TAR629G3168 Trochodendron aralioides HOM05D000368 ORTHO05D009348 1.1e-36 157.9 292 64.7
MELO3C006911.2 Cucumis melo HOM05D000368 ORTHO05D009348 4.0e-36 156.0 243 73.3
CsaV3_3G017130 Cucumis sativus L. HOM05D000368 ORTHO05D009348 4.0e-36 156.0 265 69.4
CiPaw.04G071400 Carya illinoinensis HOM05D000368 ORTHO05D009348 8.9e-36 154.8 281 66.2
THA.LOC104811975 Tarenaya hassleriana HOM05D000368 ORTHO05D009348 8.9e-36 154.8 281 63.3
PSO063G1784 Papaver somniferum HOM05D000368 ORTHO05D009348 2.6e-35 153.3 294 64.3
Cpa.g.sc107.59 Carica papaya HOM05D000368 ORTHO05D009348 3.4e-35 152.9 280 67.9
PSO782G2079 Papaver somniferum HOM05D000368 ORTHO05D009348 1.3e-34 151.0 287 65.9
Lsat_1_v5_gn_2_132381 Lactuca sativa HOM05D000368 ORTHO05D009348 1.7e-34 150.6 275 65.1
MD07G1269700 Malus domestica HOM05D000368 ORTHO05D009348 1.7e-34 150.6 282 59.6
RcHm_v2.0_Chr1g0377401 Rosa chinensis HOM05D000368 ORTHO05D009348 1.7e-34 150.6 285 56.5
Sc19g0001470 Simmondsia chinensis HOM05D000368 ORTHO05D009348 1.7e-34 150.6 278 66.9
Phvul.007G070700 Phaseolus vulgaris HOM05D000368 ORTHO05D009348 2.2e-34 150.2 270 62.6
Thecc.03G177600 Theobroma cacao HOM05D000368 ORTHO05D009348 3.7e-34 149.4 277 65.3
FAN06G0492 Fragaria x ananassa HOM05D000368 ORTHO05D009348 1.1e-33 147.9 282 57.4
Gohir.D12G258500 Gossypium hirsutum HOM05D000368 ORTHO05D009348 1.1e-33 147.9 272 62.1
Cfa008323 Carpinus fangiana HOM05D000368 ORTHO05D009348 1.4e-33 147.5 286 64.0
Gorai.008G276900 Gossypium raimondii HOM05D000368 ORTHO05D009348 1.4e-33 147.5 271 62.0
TWI39G0209 Tripterygium wilfordii HOM05D000368 ORTHO05D009348 1.9e-33 147.1 284 66.2
FAN06G1486 Fragaria x ananassa HOM05D000368 ORTHO05D009348 2.4e-33 146.7 282 57.4
CARHR265330 Cardamine hirsuta HOM05D000368 ORTHO05D009348 3.2e-33 146.4 276 63.4
SGA_v2.0_scaffold44G16725 Striga asiatica HOM05D000368 ORTHO05D009348 5.4e-33 145.6 270 62.6
Sed0010584 Sechium edule HOM05D000368 ORTHO05D009348 9.2e-33 144.8 266 66.9
Nitab4.5_0001842g0090 Nicotiana tabacum HOM05D000368 ORTHO05D009348 1.2e-32 144.4 265 48.3
GSVIVG01028962001 Vitis vinifera HOM05D000368 ORTHO05D009348 2.1e-32 143.7 283 64.3
Nn1g01474 Nelumbo nucifera HOM05D000368 ORTHO05D009348 3.5e-32 142.9 289 61.9
Hma1.2p1_0270F.1_g107970 Hydrangea macrophylla HOM05D000368 ORTHO05D009348 6.0e-32 142.1 286 63.3
FAN01G1188 Fragaria x ananassa HOM05D000368 ORTHO05D009348 7.8e-32 141.7 252 60.3
Gohir.A12G257200 Gossypium hirsutum HOM05D000368 ORTHO05D009348 1.7e-31 140.6 271 61.3
vmacro09836 Vaccinium macrocarpon HOM05D000368 ORTHO05D000289 2.3e-31 140.2 263 49.0
PGR142G2510 Punica granatum HOM05D000368 ORTHO05D009348 6.6e-31 138.7 281 63.3
Haze_13700 Corylus avellana HOM05D000368 ORTHO05D009348 8.6e-31 138.3 239 69.5
arahy.Tifrunner.gnm1.ann1.C4Z81U Arachis hypogaea HOM05D000368 ORTHO05D009348 1.5e-30 137.5 284 64.4
arahy.Tifrunner.gnm1.ann1.HM7G91 Arachis hypogaea HOM05D000368 ORTHO05D009348 1.5e-30 137.5 284 64.4
CSS0042203 Camellia sinensis var. sinensis HOM05D000368 ORTHO05D009348 1.5e-30 137.5 149 71.1
TPR.G27005 Trifolium pratense HOM05D000368 ORTHO05D009348 2.5e-30 136.7 265 48.3
Aqoxy5G04003 Aquilegia oxysepala HOM05D000368 ORTHO05D009348 1.2e-29 134.4 282 65.2
Lalb_Chr21g0305051 Lupinus albus HOM05D000368 ORTHO05D009348 1.2e-29 134.4 268 65.3
CSS0028945 Camellia sinensis var. sinensis HOM05D000368 ORTHO05D009348 2.8e-29 133.3 149 73.8
Lj5g0009535 Lotus japonicus HOM05D000368 ORTHO05D009348 6.2e-29 132.1 271 65.3
Dinv28433 Davidia involucrata HOM05D000368 ORTHO05D009348 3.1e-28 129.8 128 70.3
CANSAT21G1838 Cannabis sativa HOM05D000368 ORTHO05D009348 4.0e-28 129.4 257 67.7
MD01G1201700 Malus domestica HOM05D000368 ORTHO05D009348 4.0e-28 129.4 283 59.0
FAN10G1532 Fragaria x ananassa HOM05D000368 ORTHO05D009348 6.8e-28 128.6 283 55.8
Sp6g14600 Schrenkiella parvula HOM05D000368 ORTHO05D000289 6.8e-28 128.6 100 71.0
QL09p014019 Quercus lobata HOM05D000368 ORTHO05D009348 1.5e-27 127.5 318 55.3
Atru.BG.181.p Acer truncatum HOM05D000368 ORTHO05D009348 3.4e-27 126.3 98 69.4
Atru.chr1.452 Acer truncatum HOM05D000368 ORTHO05D009348 3.4e-27 126.3 98 69.4
Ca_10757_v3 Cicer arietinum L. HOM05D000368 ORTHO05D009348 1.7e-26 124.0 267 39.7
Thhalv10014379m.g Eutrema salsugineum HOM05D000368 ORTHO05D009348 1.7e-26 124.0 277 63.5
Dinv24555 Davidia involucrata HOM05D000368 ORTHO05D009348 6.4e-26 122.1 103 65.0
FvH4_7g29542 Fragaria vesca HOM05D000368 ORTHO05D009348 6.4e-26 122.1 153 55.6
Actinidia31822 Actinidia chinensis HOM05D000368 ORTHO05D009348 8.3e-26 121.7 151 71.5
Glyma.20G159100 Glycine max HOM05D000368 ORTHO05D009348 8.3e-26 121.7 271 58.7
FAN10G1519 Fragaria x ananassa HOM05D000368 ORTHO05D009348 1.1e-25 121.3 279 54.5
Glyma.10G235200 Glycine max HOM05D000368 ORTHO05D009348 2.1e-24 117.1 272 58.1
Psat0s3135g0040 Pisum sativum HOM05D000368 ORTHO05D009348 6.0e-24 115.5 267 56.6
C03p18350 Brassica napus HOM05D000368 ORTHO05D000289 7.8e-24 115.2 271 62.4
Migut.F00336 Erythranthe guttata HOM05D000368 ORTHO05D009348 7.8e-24 115.2 277 60.6
BraA03t10861Z Brassica rapa HOM05D000368 ORTHO05D000289 2.5e-22 110.2 98 62.2
A03p15700 Brassica napus HOM05D000368 ORTHO05D000289 5.6e-22 109.0 271 62.4
BolC3t14232H Brassica oleracea HOM05D000368 ORTHO05D000289 9.6e-22 108.2 271 60.5
Duzib205G0377 Durio zibethinus HOM05D000368 ORTHO05D000289 1.6e-21 107.5 255 57.3
AUR62015971 Chenopodium quinoa HOM05D000368 ORTHO05D009348 2.1e-21 107.1 239 64.0
C09p41730 Brassica napus HOM05D000368 ORTHO05D000289 6.2e-21 105.5 97 62.9
BolC9t57061H Brassica oleracea HOM05D000368 ORTHO05D009348 6.2e-21 105.5 97 62.9
MBI17_g19093_MAGBIO Magnolia biondii HOM05D000368 ORTHO05D009348 6.2e-21 105.5 307 46.6
HPP92_018588 Vanilla planifolia HOM05D000368 ORTHO05D009348 4.0e-20 102.8 273 58.6
HPP92_006518 Vanilla planifolia HOM05D000368 ORTHO05D009348 5.2e-20 102.4 275 58.5
Zm00001eb074410 Zea mays HOM05D000368 ORTHO05D009348 9.3e-17 91.7 101 51.5
Actinidia03122 Actinidia chinensis HOM05D000368 ORTHO05D009348 5.1e-15 85.9 97 57.7
Os04g0555800 Oryza sativa ssp. japonica HOM05D000368 ORTHO05D009348 6.6e-15 85.5 98 53.1
Peaxi162Scf00444g00851 Petunia axillaris HOM05D000368 ORTHO05D009348 1.5e-14 84.3 69 69.6
ATR0680G368 Amborella trichopoda HOM05D000368 ORTHO05D009348 1.9e-14 84.0 158 59.5
Dinv24556 Davidia involucrata HOM05D000368 ORTHO05D009348 9.3e-09 65.1 140 69.3
Pp3c16_20170 Physcomitrium patens HOM05D000368 ORTHO05D009348 2.7e-08 63.5 54 53.7
Mapoly0006s0064 Marchantia polymorpha HOM05D000368 ORTHO05D009348 1.3e-07 61.2 107 47.7
SEGI_15321 Sequoiadendron giganteum HOM05D000368 ORTHO05D009348 2.3e-07 60.5 99 41.4
AagrBONN_evm.TU.Sc2ySwM_117.528 Anthoceros agrestis HOM05D000368 ORTHO05D009348 5.1e-07 59.3 302 43.4
BraA10t43080Z Brassica rapa HOM05D000368 ORTHO05D009348 4.3e-06 56.2 44 54.5


User provided reference genes

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