Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g025310.3 Solanum lycopersicum HOM05D005376 ORTHO05D006481 1.1e-164 583.6 376 100.0
Sopen03g004140 Solanum pennellii HOM05D005376 ORTHO05D006481 4.9e-136 488.4 340 93.2
PGSC0003DMG400010161 Solanum tuberosum HOM05D005376 ORTHO05D006481 6.4e-120 434.9 368 78.3
CAN.G236.14 Capsicum annuum HOM05D005376 ORTHO05D006481 7.1e-95 351.7 319 75.2
Nitab4.5_0000084g0270 Nicotiana tabacum HOM05D005376 ORTHO05D006481 1.3e-85 320.9 322 72.4
Nitab4.5_0001625g0010 Nicotiana tabacum HOM05D005376 ORTHO05D006481 4.8e-75 285.8 403 52.9
Peaxi162Scf00057g10027 Petunia axillaris HOM05D005376 ORTHO05D006481 1.4e-42 177.9 233 60.5
GSVIVG01028894001 Vitis vinifera HOM05D005376 ORTHO05D006481 2.9e-40 170.2 259 49.8
Rhsim03G0188900 Rhododendron simsii HOM05D005376 ORTHO05D006481 7.2e-39 165.6 225 53.8
RhsimUnG0027200 Rhododendron simsii HOM05D005376 ORTHO05D006481 7.2e-39 165.6 225 53.8
Hma1.2p1_0227F.1_g096040 Hydrangea macrophylla HOM05D005376 ORTHO05D006481 9.4e-39 165.2 232 56.0
Dinv35232 Davidia involucrata HOM05D005376 ORTHO05D006481 1.0e-37 161.8 247 47.0
CSS0038684 Camellia sinensis var. sinensis HOM05D005376 ORTHO05D006481 6.8e-37 159.1 266 46.2
Aqoxy7G00281 Aquilegia oxysepala HOM05D005376 ORTHO05D006481 1.2e-36 158.3 225 46.7
Actinidia20875 Actinidia chinensis HOM05D005376 ORTHO05D006481 3.7e-35 153.3 265 46.4
Oeu022600.1 Olea europaea HOM05D005376 ORTHO05D006481 4.9e-35 152.9 212 52.4
Cfa016268 Carpinus fangiana HOM05D005376 ORTHO05D006481 6.3e-35 152.5 245 44.5
FAN06G2500 Fragaria x ananassa HOM05D005376 ORTHO05D006481 1.4e-34 151.4 249 46.6
FAN06G2733 Fragaria x ananassa HOM05D005376 ORTHO05D006481 1.4e-34 151.4 249 46.6
Duzib205G1046 Durio zibethinus HOM05D005376 ORTHO05D006481 5.4e-34 149.4 283 41.3
FvH4_7g29980 Fragaria vesca HOM05D005376 ORTHO05D006481 5.4e-34 149.4 249 46.6
FAN10G0028 Fragaria x ananassa HOM05D005376 ORTHO05D006481 9.2e-34 148.7 248 46.0
FAN10G2308 Fragaria x ananassa HOM05D005376 ORTHO05D006481 9.2e-34 148.7 248 46.0
Gohir.D09G043122 Gossypium hirsutum HOM05D005376 ORTHO05D006481 1.2e-33 148.3 256 43.4
TAR636G3226 Trochodendron aralioides HOM05D005376 ORTHO05D006481 2.0e-33 147.5 269 47.2
FAN03G2197 Fragaria x ananassa HOM05D005376 ORTHO05D006481 3.5e-33 146.7 249 45.0
Lsat_1_v5_gn_9_57581 Lactuca sativa HOM05D005376 ORTHO05D006481 3.5e-33 146.7 241 42.3
RcHm_v2.0_Chr1g0377931 Rosa chinensis HOM05D005376 ORTHO05D006481 5.9e-33 146.0 175 54.3
FAN01G1606 Fragaria x ananassa HOM05D005376 ORTHO05D006481 7.7e-33 145.6 249 45.0
Lj5g0000296 Lotus japonicus HOM05D005376 ORTHO05D006481 1.7e-32 144.4 252 42.5
FAN03G2430 Fragaria x ananassa HOM05D005376 ORTHO05D006481 2.3e-32 144.1 245 44.9
Potri.012G144300 Populus trichocarpa HOM05D005376 ORTHO05D006481 2.3e-32 144.1 238 44.5
QL09p013410 Quercus lobata HOM05D005376 ORTHO05D006481 2.3e-32 144.1 263 44.9
SalBow4G0945 Salvia bowleyana HOM05D005376 ORTHO05D006481 2.3e-32 144.1 204 46.1
Atru.chr1.400 Acer truncatum HOM05D005376 ORTHO05D006481 2.9e-32 143.7 240 44.2
Gohir.A09G042000 Gossypium hirsutum HOM05D005376 ORTHO05D006481 3.8e-32 143.3 257 42.8
Migut.F00319 Erythranthe guttata HOM05D005376 ORTHO05D006481 8.6e-32 142.1 253 41.1
Potri.015G147100 Populus trichocarpa HOM05D005376 ORTHO05D006481 8.6e-32 142.1 215 45.1
COL.COLO4_28026 Corchorus olitorius HOM05D005376 ORTHO05D006481 1.5e-31 141.4 285 43.9
Thecc.03G181600 Theobroma cacao HOM05D005376 ORTHO05D006481 1.5e-31 141.4 272 43.8
TWI23G0148 Tripterygium wilfordii HOM05D005376 ORTHO05D006481 1.9e-31 141.0 261 42.1
Nn1g01558 Nelumbo nucifera HOM05D005376 ORTHO05D006481 2.5e-31 140.6 244 43.4
Prupe.2G298400 Prunus persica HOM05D005376 ORTHO05D006481 2.5e-31 140.6 255 43.9
MSTRG.27099 Avicennia marina HOM05D005376 ORTHO05D006481 3.3e-31 140.2 231 43.7
Haze_00025 Corylus avellana HOM05D005376 ORTHO05D006481 3.3e-31 140.2 274 40.5
Gorai.006G049600 Gossypium raimondii HOM05D005376 ORTHO05D006481 4.3e-31 139.8 265 40.8
PSO478G1134 Papaver somniferum HOM05D005376 ORTHO05D006481 5.6e-31 139.4 171 51.5
Medtr1g100220 Medicago truncatula HOM05D005376 ORTHO05D006481 9.5e-31 138.7 181 58.0
Lalb_Chr06g0161271 Lupinus albus HOM05D005376 ORTHO05D006481 1.6e-30 137.9 248 43.5
TWI39G0402 Tripterygium wilfordii HOM05D005376 ORTHO05D006481 1.6e-30 137.9 260 41.5
PSO782G3185 Papaver somniferum HOM05D005376 ORTHO05D006481 2.1e-30 137.5 172 50.0
Ciclev10005655m.g Citrus clementina HOM05D005376 ORTHO05D006481 3.6e-30 136.7 228 47.8
Cc02_g02590 Coffea canephora HOM05D005376 ORTHO05D006481 4.7e-30 136.3 147 56.5
Duzib084G0056 Durio zibethinus HOM05D005376 ORTHO05D006481 4.7e-30 136.3 281 39.9
Glyma.10G232400 Glycine max HOM05D005376 ORTHO05D006481 4.7e-30 136.3 219 46.6
Eucgr.K00283 Eucalyptus grandis HOM05D005376 ORTHO05D006481 6.1e-30 136.0 227 45.8
CsaV3_3G017320 Cucumis sativus L. HOM05D005376 ORTHO05D006481 1.4e-29 134.8 245 44.1
Psat6g193680 Pisum sativum HOM05D005376 ORTHO05D006481 1.4e-29 134.8 247 47.0
ECA232G4406 Erigeron canadensis HOM05D005376 ORTHO05D006481 4.0e-29 133.3 142 64.1
Cpa.g.sc107.83 Carica papaya HOM05D005376 ORTHO05D006481 5.2e-29 132.9 253 41.5
EL10Ac3g05591 Beta vulgaris HOM05D005376 ORTHO05D006481 8.9e-29 132.1 242 41.7
Sed0004337 Sechium edule HOM05D005376 ORTHO05D006481 1.2e-28 131.7 251 42.6
VMungo0720G1970 Vigna mungo HOM05D005376 ORTHO05D006481 1.2e-28 131.7 218 44.0
Migut.F01097 Erythranthe guttata HOM05D005376 ORTHO05D006481 1.5e-28 131.3 238 44.5
MD07G1276100 Malus domestica HOM05D005376 ORTHO05D006481 1.5e-28 131.3 245 43.3
Manes.14G024100 Manihot esculenta HOM05D005376 ORTHO05D006481 1.5e-28 131.3 235 41.7
Glyma.20G161700 Glycine max HOM05D005376 ORTHO05D006481 3.4e-28 130.2 218 45.0
DCAR_009379 Daucus carota HOM05D005376 ORTHO05D006481 4.4e-28 129.8 245 43.3
SGA_v2.0_scaffold44G16739 Striga asiatica HOM05D005376 ORTHO05D006481 9.8e-28 128.6 171 50.3
PGR142G2432 Punica granatum HOM05D005376 ORTHO05D006481 1.3e-27 128.3 218 45.0
THA.LOC104825106 Tarenaya hassleriana HOM05D005376 ORTHO05D006481 1.3e-27 128.3 258 41.9
AUR62031389 Chenopodium quinoa HOM05D005376 ORTHO05D006481 1.7e-27 127.9 219 46.1
Sabra12G0108300 Salix brachista HOM05D005376 ORTHO05D006481 2.2e-27 127.5 265 38.9
Lsat_1_v5_gn_8_6901 Lactuca sativa HOM05D005376 ORTHO05D006481 3.7e-27 126.7 181 46.4
Ca_10737_v3 Cicer arietinum L. HOM05D004749 ORTHO05D005995 4.9e-27 126.3 193 54.4
ECA233G3491 Erigeron canadensis HOM05D005376 ORTHO05D006481 1.1e-26 125.2 154 52.6
HanXRQChr09g0252451 Helianthus annuus HOM05D005376 ORTHO05D006481 1.4e-26 124.8 277 36.8
MBI17_g35259_MAGBIO Magnolia biondii HOM05D005376 ORTHO05D006481 1.4e-26 124.8 190 48.9
TPR.G27004 Trifolium pratense HOM05D004749 ORTHO05D005995 1.8e-26 124.4 219 50.2
Ah.13g068730 Amaranthus hybridus HOM05D005376 ORTHO05D006481 2.4e-26 124.0 216 44.4
AUR62021148 Chenopodium quinoa HOM05D005376 ORTHO05D006481 3.2e-26 123.6 230 43.9
Oeu004115.1 Olea europaea HOM05D005376 ORTHO05D006481 3.2e-26 123.6 171 51.5
CiPaw.06G001100 Carya illinoinensis HOM05D005376 ORTHO05D006481 7.0e-26 122.5 190 47.9
MELO3C006928.2 Cucumis melo HOM05D005376 ORTHO05D006481 7.0e-26 122.5 268 40.7
ClCG05G008230 Citrullus lanatus HOM05D005376 ORTHO05D006481 1.2e-25 121.7 241 41.1
Aa31LG3G8830 Aethionema arabicum HOM05D005376 ORTHO05D006481 1.6e-25 121.3 216 42.6
Sc19g0001360 Simmondsia chinensis HOM05D005376 ORTHO05D006481 1.6e-25 121.3 232 45.7
Hund04774 Selenicereus undatus HOM05D005376 ORTHO05D006481 7.8e-25 119.0 304 43.1
arahy.Tifrunner.gnm1.ann1.QSSI4A Arachis hypogaea HOM05D005376 ORTHO05D006481 1.0e-24 118.6 149 51.7
CANSAT21G2457 Cannabis sativa HOM05D005376 ORTHO05D006481 2.3e-24 117.5 265 39.2
AL8G26870 Arabidopsis lyrata HOM05D005376 ORTHO05D006481 3.9e-24 116.7 223 42.2
Manes.06G150900 Manihot esculenta HOM05D005376 ORTHO05D006481 5.0e-24 116.3 149 53.0
Actinidia34140 Actinidia chinensis HOM05D005376 ORTHO05D006481 6.6e-24 115.9 226 42.0
arahy.Tifrunner.gnm1.ann1.20ERFR Arachis hypogaea HOM05D005376 ORTHO05D006481 6.6e-24 115.9 150 51.3
Phvul.007G073200 Phaseolus vulgaris HOM05D005376 ORTHO05D006481 6.6e-24 115.9 133 56.4
CARHR265430 Cardamine hirsuta HOM05D005376 ORTHO05D006481 8.6e-24 115.5 238 40.8
BcaB01g04203 Brassica carinata HOM05D005376 ORTHO05D006481 2.5e-23 114.0 216 42.6
Thhalv10014513m.g Eutrema salsugineum HOM05D005376 ORTHO05D006481 1.2e-22 111.7 253 37.9
C03p18310 Brassica napus HOM05D005376 ORTHO05D006481 2.8e-22 110.5 221 42.5
BolC3t14229H Brassica oleracea HOM05D005376 ORTHO05D006481 2.8e-22 110.5 221 42.5
BcaB05g21960 Brassica carinata HOM05D005376 ORTHO05D006481 4.7e-22 109.8 265 37.0
BcaC03g14530 Brassica carinata HOM05D005376 ORTHO05D006481 6.2e-22 109.4 235 39.6
A02p11810 Brassica napus HOM05D005376 ORTHO05D006481 6.2e-22 109.4 235 40.0
BcaC01g06187 Brassica carinata HOM05D005376 ORTHO05D006481 8.0e-22 109.0 224 42.0
BraA02t06246Z Brassica rapa HOM05D005376 ORTHO05D006481 8.0e-22 109.0 237 38.8
BraA03t10859Z Brassica rapa HOM05D005376 ORTHO05D006481 8.0e-22 109.0 224 41.5
BolC2t08101H Brassica oleracea HOM05D005376 ORTHO05D006481 1.0e-21 108.6 235 40.0
A03p15670 Brassica napus HOM05D005376 ORTHO05D006481 5.2e-21 106.3 228 40.4
CDE09G0642 Ceratophyllum demersum HOM05D005376 ORTHO05D006481 5.2e-21 106.3 213 39.0
Carub.0008s1254 Capsella rubella HOM05D005376 ORTHO05D006481 6.8e-21 105.9 240 39.2
ATR0680G109 Amborella trichopoda HOM05D005376 ORTHO05D006481 1.2e-20 105.1 200 41.0
HPP92_014785 Vanilla planifolia HOM05D005376 ORTHO05D006481 1.2e-20 105.1 197 38.1
AT5G52440 Arabidopsis thaliana HOM05D005376 ORTHO05D006481 2.0e-20 104.4 238 41.6
C02p19650 Brassica napus HOM05D005376 ORTHO05D006481 3.4e-20 103.6 221 42.1
Os11g0580800 Oryza sativa ssp. japonica HOM05D005376 ORTHO05D006481 1.7e-19 101.3 108 58.3
Zm00001eb085050 Zea mays HOM05D005376 ORTHO05D006481 4.9e-19 99.8 186 41.4
Zm00001eb421330 Zea mays HOM05D005376 ORTHO05D006481 4.9e-19 99.8 145 46.2
Sp6g14660 Schrenkiella parvula HOM05D005376 ORTHO05D006481 1.4e-18 98.2 246 36.6
Pp3c16_8830 Physcomitrium patens HOM05D005376 ORTHO05D006481 1.6e-17 94.7 98 58.2
Pp3c5_19450 Physcomitrium patens HOM05D005376 ORTHO05D006481 3.5e-17 93.6 162 45.1
Pp3c5_19453 Physcomitrium patens HOM05D005376 ORTHO05D006481 3.5e-17 93.6 162 45.1
CBR_g49097 Chara braunii HOM05D005376 ORTHO05D006481 1.3e-16 91.7 111 51.4
SEGI_07365 Sequoiadendron giganteum HOM05D005376 ORTHO05D006481 3.0e-16 90.5 186 37.6
AagrBONN_evm.TU.Sc2ySwM_117.3925 Anthoceros agrestis HOM05D005376 ORTHO05D006481 3.9e-16 90.1 126 47.6
Hund11730 Selenicereus undatus HOM05D005376 ORTHO05D006481 3.9e-16 90.1 206 38.3
Mapoly0083s0037 Marchantia polymorpha HOM05D005376 ORTHO05D006481 9.5e-15 85.5 149 43.6
MCO14G251 Micromonas commoda HOM05D005376 ORTHO05D006481 1.1e-13 82.0 156 40.4
SMO223G0008 Selaginella moellendorffii HOM05D005376 ORTHO05D006481 4.0e-13 80.1 71 59.2
arahy.Tifrunner.gnm1.ann1.P8QCSH Arachis hypogaea HOM05D005376 ORTHO05D006481 6.4e-11 72.8 70 62.9
CiPaw.06G001400 Carya illinoinensis HOM05D005376 ORTHO05D006481 3.2e-10 70.5 96 49.0
PRCOL_00002629 Prasinoderma coloniale HOM05D005376 ORTHO05D006481 4.1e-10 70.1 72 50.0
HPP92_028097 Vanilla planifolia HOM05D005376 ORTHO05D006481 1.2e-09 68.6 56 67.9
Cre08.g371650 Chlamydomonas reinhardtii HOM05D005376 ORTHO05D006481 6.6e-08 62.8 130 36.2


User provided reference genes

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