Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g007520.3 Solanum lycopersicum HOM05D004719 ORTHO05D005519 9.0e-119 430.3 215 100.0
Sopen03g003480 Solanum pennellii HOM05D004719 ORTHO05D005519 2.0e-118 429.1 215 99.5
PGSC0003DMG400009067 Solanum tuberosum HOM05D004719 ORTHO05D005519 5.5e-108 394.4 221 89.6
Nitab4.5_0001331g0150 Nicotiana tabacum HOM05D004719 ORTHO05D005519 6.7e-90 334.3 221 80.1
Nitab4.5_0000472g0190 Nicotiana tabacum HOM05D004719 ORTHO05D005519 7.4e-89 330.9 221 79.2
Peaxi162Scf00904g00473 Petunia axillaris HOM05D004719 ORTHO05D005519 1.5e-84 316.6 217 75.1
CAN.G108.16 Capsicum annuum HOM05D004719 ORTHO05D005519 2.0e-81 306.2 206 75.2
TWI14G0874 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 3.0e-66 255.8 222 62.6
PGSC0003DMG400028901 Solanum tuberosum HOM05D004719 ORTHO05D005519 5.2e-66 255.0 222 64.9
Dinv35299 Davidia involucrata HOM05D004719 ORTHO05D005519 4.9e-64 248.4 222 60.4
CAN.G204.6 Capsicum annuum HOM05D004719 ORTHO05D005519 6.3e-64 248.1 215 63.3
TWI23G0029 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 1.1e-63 247.3 222 59.9
vmacro10099 Vaccinium macrocarpon HOM05D004719 ORTHO05D005519 1.1e-63 247.3 225 59.6
Thecc.03G191400 Theobroma cacao HOM05D004719 ORTHO05D005519 1.4e-63 246.9 227 58.1
Gorai.007G014400 Gossypium raimondii HOM05D004719 ORTHO05D005519 2.4e-63 246.1 225 58.7
Gohir.A11G013800 Gossypium hirsutum HOM05D004719 ORTHO05D005519 5.4e-63 245.0 225 59.1
SGA_v2.0_scaffold192G40593 Striga asiatica HOM05D004719 ORTHO05D005519 7.0e-63 244.6 229 57.2
TWI39G0409 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 7.0e-63 244.6 222 59.9
SalBow4G0130 Salvia bowleyana HOM05D004719 ORTHO05D005519 1.6e-62 243.4 227 56.8
Nn7g37372 Nelumbo nucifera HOM05D004719 ORTHO05D005519 2.0e-62 243.0 224 59.4
Gohir.D11G014000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 5.9e-62 241.5 225 58.7
Oeu049096.1 Olea europaea HOM05D004719 ORTHO05D005519 1.0e-61 240.7 224 58.0
SalBow4G0254 Salvia bowleyana HOM05D004719 ORTHO05D005519 1.3e-61 240.4 227 56.4
Potri.012G033300 Populus trichocarpa HOM05D004719 ORTHO05D005519 6.6e-61 238.0 224 61.2
Nn1g01780 Nelumbo nucifera HOM05D004719 ORTHO05D005519 8.6e-61 237.7 220 59.5
Duzib084G0320 Durio zibethinus HOM05D004719 ORTHO05D005519 1.1e-60 237.3 228 56.6
MSTRG.8686 Avicennia marina HOM05D004719 ORTHO05D005519 4.3e-60 235.3 227 54.6
Cc02_g02010 Coffea canephora HOM05D004719 ORTHO05D005519 4.3e-60 235.3 221 59.7
CSS0006896 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 2.1e-59 233.0 225 56.9
CSS0042605 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 2.1e-59 233.0 225 56.9
Hma1.2p1_1891F.1_g306690 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 8.0e-59 231.1 220 56.8
Duzib068G0142 Durio zibethinus HOM05D004719 ORTHO05D005519 2.3e-58 229.6 224 57.1
Rhsim09G0203300 Rhododendron simsii HOM05D004719 ORTHO05D005519 6.8e-58 228.0 244 53.7
TAR333G0005 Trochodendron aralioides HOM05D004719 ORTHO05D005519 1.2e-57 227.3 222 55.4
Actinidia31859 Actinidia chinensis HOM05D004719 ORTHO05D005519 2.6e-57 226.1 221 57.0
Oeu009271.1 Olea europaea HOM05D004719 ORTHO05D005519 3.4e-57 225.7 231 54.5
Atru.chr1.287 Acer truncatum HOM05D004719 ORTHO05D005519 4.4e-57 225.3 230 52.6
MELO3C005862.2 Cucumis melo HOM05D004719 ORTHO05D005519 1.7e-56 223.4 228 55.7
Lsat_1_v5_gn_2_134381 Lactuca sativa HOM05D004719 ORTHO05D005519 1.7e-56 223.4 224 56.7
Migut.F00251 Erythranthe guttata HOM05D004719 ORTHO05D005519 2.2e-56 223.0 227 54.2
Duzib205G0172 Durio zibethinus HOM05D004719 ORTHO05D005519 6.4e-56 221.5 227 54.6
MD07G1283600 Malus domestica HOM05D004719 ORTHO05D005519 8.3e-56 221.1 235 53.6
Hma1.2p1_0327F.1_g126670 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 1.1e-55 220.7 223 56.5
Hma1.2p1_0142F.1_g064100 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 1.8e-55 219.9 234 53.4
Prupe.2G306000 Prunus persica HOM05D004719 ORTHO05D005519 4.1e-55 218.8 231 54.1
Cfa016352 Carpinus fangiana HOM05D004719 ORTHO05D005519 5.4e-55 218.4 234 53.0
BraA03t10813Z Brassica rapa HOM05D004719 ORTHO05D005519 1.2e-54 217.2 229 53.7
A03p15190 Brassica napus HOM05D004719 ORTHO05D005519 2.7e-54 216.1 229 53.3
PSO170G2586 Papaver somniferum HOM05D004719 ORTHO05D005519 3.5e-54 215.7 221 54.8
DCAR_020296 Daucus carota HOM05D004719 ORTHO05D005519 4.6e-54 215.3 209 56.9
Manes.06G156000 Manihot esculenta HOM05D004719 ORTHO05D005519 3.0e-53 212.6 200 57.5
PSO063G4149 Papaver somniferum HOM05D004719 ORTHO05D005519 3.0e-53 212.6 221 54.8
QL09p011210 Quercus lobata HOM05D004719 ORTHO05D005519 3.0e-53 212.6 232 53.0
Sed0016292 Sechium edule HOM05D004719 ORTHO05D005519 3.0e-53 212.6 216 52.3
Ciclev10005830m.g Citrus clementina HOM05D004719 ORTHO05D005519 5.0e-53 211.8 225 51.6
MSTRG.27052 Avicennia marina HOM05D004719 ORTHO05D005519 8.6e-53 211.1 238 49.6
Cpa.g.sc3.37 Carica papaya HOM05D004719 ORTHO05D005519 1.1e-52 210.7 228 53.9
Peaxi162Scf00618g00530 Petunia axillaris HOM05D004719 ORTHO05D005519 1.1e-52 210.7 150 71.3
BcaNung06632 Brassica carinata HOM05D004719 ORTHO05D005519 1.9e-52 209.9 224 53.1
C03p17720 Brassica napus HOM05D004719 ORTHO05D005519 1.9e-52 209.9 224 53.1
CiPaw.06G006600 Carya illinoinensis HOM05D004719 ORTHO05D005519 1.9e-52 209.9 211 54.5
Thhalv10014603m.g Eutrema salsugineum HOM05D004719 ORTHO05D005519 1.9e-52 209.9 230 52.6
Sp6g15480 Schrenkiella parvula HOM05D004719 ORTHO05D005519 1.9e-52 209.9 232 52.2
Aa31LG3G9210 Aethionema arabicum HOM05D004719 ORTHO05D005519 4.3e-52 208.8 230 53.0
HanXRQChr14g0462731 Helianthus annuus HOM05D004719 ORTHO05D005519 4.3e-52 208.8 219 53.0
Haze_00101 Corylus avellana HOM05D004719 ORTHO05D005519 5.6e-52 208.4 241 50.2
CsaV3_5G000780 Cucumis sativus L. HOM05D004719 ORTHO05D005519 5.6e-52 208.4 228 53.1
MD01G1213900 Malus domestica HOM05D004719 ORTHO05D005519 5.6e-52 208.4 236 51.3
Sed0024250 Sechium edule HOM05D004719 ORTHO05D005519 5.6e-52 208.4 235 49.8
RcHm_v2.0_Chr1g0379961 Rosa chinensis HOM05D004719 ORTHO05D005519 7.3e-52 208.0 236 51.3
ClCG01G000680 Citrullus lanatus HOM05D004719 ORTHO05D005519 1.6e-51 206.8 254 48.8
TAR374G0131 Trochodendron aralioides HOM05D004719 ORTHO05D005519 2.1e-51 206.5 222 54.5
Eucgr.A02672 Eucalyptus grandis HOM05D004719 ORTHO05D005519 3.6e-51 205.7 184 58.2
THA.LOC104800282 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 4.7e-51 205.3 228 50.9
Lj1g0014949 Lotus japonicus HOM05D004719 ORTHO05D005519 6.2e-51 204.9 219 51.6
AUR62021055 Chenopodium quinoa HOM05D004719 ORTHO05D005519 1.0e-50 204.1 228 53.1
FAN10G3127 Fragaria x ananassa HOM05D004719 ORTHO05D005519 2.3e-50 203.0 240 51.2
unitig_747.g21854 Utricularia gibba HOM05D004719 ORTHO05D005519 2.3e-50 203.0 221 51.1
BolC3t14182H Brassica oleracea HOM05D004719 ORTHO05D005519 3.1e-50 202.6 236 50.4
FAN01G1522 Fragaria x ananassa HOM05D004719 ORTHO05D005519 6.8e-50 201.4 246 50.4
FAN03G2418 Fragaria x ananassa HOM05D004719 ORTHO05D005519 6.8e-50 201.4 236 51.3
EL10Ac3g05361 Beta vulgaris HOM05D004719 ORTHO05D005519 4.4e-49 198.7 224 50.0
ECA238G1719 Erigeron canadensis HOM05D000316 ORTHO05D001978 4.4e-49 198.7 203 54.2
FAN06G4721 Fragaria x ananassa HOM05D004719 ORTHO05D005519 4.4e-49 198.7 237 50.6
AL8G28040 Arabidopsis lyrata HOM05D004719 ORTHO05D005519 5.8e-49 198.4 224 50.4
FvH4_7g30890 Fragaria vesca HOM05D004719 ORTHO05D005519 5.8e-49 198.4 233 51.1
PGR042G1451 Punica granatum HOM05D004719 ORTHO05D005519 5.8e-49 198.4 224 52.2
Glyma.04G239200 Glycine max HOM05D004719 ORTHO05D005519 7.5e-49 198.0 216 52.3
THA.LOC104811935 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 7.5e-49 198.0 228 50.9
Ah.07g206120 Amaranthus hybridus HOM05D004719 ORTHO05D005519 1.7e-48 196.8 225 51.6
Phvul.008G159900 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 1.7e-48 196.8 215 51.2
COL.COLO4_08254 Corchorus olitorius HOM05D004719 ORTHO05D005519 2.2e-48 196.4 158 63.3
Potri.015G023600 Populus trichocarpa HOM05D004719 ORTHO05D005519 2.2e-48 196.4 223 51.6
Aqoxy5G04028 Aquilegia oxysepala HOM05D004719 ORTHO05D005519 3.7e-48 195.7 228 51.8
AUR62031477 Chenopodium quinoa HOM05D004719 ORTHO05D005519 3.7e-48 195.7 227 51.1
Carub.0008s1351 Capsella rubella HOM05D004719 ORTHO05D005519 8.3e-48 194.5 232 50.4
CARHR266390 Cardamine hirsuta HOM05D004719 ORTHO05D005519 1.1e-47 194.1 233 50.2
BcaB08g35695 Brassica carinata HOM05D004719 ORTHO05D005519 1.4e-47 193.7 216 50.5
Lalb_Chr23g0271411 Lupinus albus HOM05D004719 ORTHO05D005519 1.9e-47 193.4 224 52.2
Glyma.06G124600 Glycine max HOM05D004719 ORTHO05D005519 3.2e-47 192.6 216 51.4
CANSAT21G2536 Cannabis sativa HOM05D004719 ORTHO05D005519 5.4e-47 191.8 236 50.4
ATR0661G055 Amborella trichopoda HOM05D004719 ORTHO05D005519 1.2e-46 190.7 221 50.2
PGR142G1718 Punica granatum HOM05D004719 ORTHO05D005519 1.6e-46 190.3 226 50.4
arahy.Tifrunner.gnm1.ann1.A0EQPQ Arachis hypogaea HOM05D004719 ORTHO05D005519 2.0e-46 189.9 214 51.4
AT5G53330 Arabidopsis thaliana HOM05D004719 ORTHO05D005519 3.5e-46 189.1 229 49.8
Phvul.009G136700 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 6.0e-46 188.3 216 48.1
BcaC01g06246 Brassica carinata HOM05D004719 ORTHO05D005519 1.0e-45 187.6 199 52.8
HanXRQChr07g0207131 Helianthus annuus HOM05D004719 ORTHO05D005519 3.9e-45 185.7 224 49.6
Manes.14G019414 Manihot esculenta HOM05D004719 ORTHO05D005519 1.9e-44 183.3 179 58.1
Gohir.D09G178000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 4.3e-44 182.2 194 52.6
Gorai.006G200100 Gossypium raimondii HOM05D004719 ORTHO05D005519 5.6e-44 181.8 194 52.6
HPP92_008641 Vanilla planifolia HOM05D004719 ORTHO05D005519 5.6e-44 181.8 243 44.9
A10p10840 Brassica napus HOM05D004719 ORTHO05D005519 2.1e-43 179.9 222 47.7
C09p43180 Brassica napus HOM05D004719 ORTHO05D005519 6.2e-43 178.3 234 46.2
Gohir.A09G183300 Gossypium hirsutum HOM05D004719 ORTHO05D005519 8.1e-43 177.9 200 51.0
BraA10t43168Z Brassica rapa HOM05D004719 ORTHO05D005519 1.1e-42 177.6 220 45.9
BcaC04g20465 Brassica carinata HOM05D004719 ORTHO05D005519 1.4e-42 177.2 234 46.2
arahy.Tifrunner.gnm1.ann1.YXX8CM Arachis hypogaea HOM05D004719 ORTHO05D005519 3.1e-42 176.0 214 49.5
Sc13g0009490 Simmondsia chinensis HOM05D004719 ORTHO05D005519 8.9e-42 174.5 151 59.6
Psat5g080520 Pisum sativum HOM05D004719 ORTHO05D005519 2.6e-41 172.9 223 46.6
Medtr3g090640 Medicago truncatula HOM05D004719 ORTHO05D005519 4.4e-41 172.2 218 49.1
BolC9t57191H Brassica oleracea HOM05D004719 ORTHO05D005519 9.8e-41 171.0 238 44.5
Lj1C1011G7 Lonicera japonica HOM05D004719 ORTHO05D005519 4.9e-40 168.7 132 63.6
Os06g0160400 Oryza sativa ssp. japonica HOM05D004719 ORTHO05D005519 4.9e-40 168.7 244 43.4
CDE08G1019 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 1.9e-39 166.8 224 46.0
VMungo1309G2489 Vigna mungo HOM05D004719 ORTHO05D005519 5.4e-39 165.2 250 41.2
Ca_16667_v3 Cicer arietinum L. HOM05D004719 ORTHO05D005519 7.1e-39 164.9 223 45.7
Zm00001eb376120 Zea mays HOM05D004719 ORTHO05D005519 9.2e-39 164.5 254 43.7
MBI06_g04286_MAGBIO Magnolia biondii HOM05D004719 ORTHO05D005519 1.2e-38 164.1 225 46.7
TPR.G33870 Trifolium pratense HOM05D004719 ORTHO05D005519 6.0e-38 161.8 201 46.8
Actinidia34185 Actinidia chinensis HOM05D004719 ORTHO05D005519 1.7e-37 160.2 145 58.6
GSVIVG01028725001 Vitis vinifera HOM05D004719 ORTHO05D005519 1.7e-37 160.2 138 61.6
BcaNung07347 Brassica carinata HOM05D004719 ORTHO05D005519 1.6e-35 153.7 165 51.5
FAN06G1194 Fragaria x ananassa HOM05D004719 ORTHO05D005519 1.6e-35 153.7 140 57.9
PGR142G4196 Punica granatum HOM05D004719 ORTHO05D005519 1.5e-33 147.1 223 43.0
SEGI_18632 Sequoiadendron giganteum HOM05D004719 ORTHO05D005519 4.9e-32 142.1 169 50.9
CDE02G1124 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 1.4e-31 140.6 219 41.6
Mapoly0050s0076 Marchantia polymorpha HOM05D004719 ORTHO05D005519 5.1e-29 132.1 234 39.7
VMungo0647G2259 Vigna mungo HOM05D004719 ORTHO05D005519 1.9e-28 130.2 128 52.3
AagrBONN_evm.TU.Sc2ySwM_340.345 Anthoceros agrestis HOM05D004719 ORTHO05D005519 2.4e-23 113.2 217 38.2
Pp3c1_11420 Physcomitrium patens HOM05D004719 ORTHO05D005519 9.3e-23 111.3 221 36.7
Dinv28349 Davidia involucrata HOM05D004719 ORTHO05D005519 1.6e-19 100.5 62 77.4
FAN18G3526 Fragaria x ananassa HOM05D006854 ORTHO05D210570 5.3e-18 95.5 75 62.7
BcaC01g06237 Brassica carinata HOM05D001465 ORTHO05D001434 1.3e-16 90.9 169 40.8
QL04p064474 Quercus lobata HOM05D000013 ORTHO05D000011 4.9e-16 89.0 58 69.0
Solyc06g036500.1 Solanum lycopersicum HOM05D004719 ORTHO05D005519 4.9e-16 89.0 130 46.2
Sopen06g012490 Solanum pennellii HOM05D004719 ORTHO05D005519 9.3e-15 84.7 137 44.5
C03p17810 Brassica napus HOM05D004719 ORTHO05D005519 1.6e-14 84.0 194 36.1
FAN01G1848 Fragaria x ananassa HOM05D002077 ORTHO05D000818 7.9e-14 81.6 57 66.7
FvH4_7g16570 Fragaria vesca HOM05D004719 ORTHO05D005519 1.0e-13 81.3 56 66.1
BolC3t14188H Brassica oleracea HOM05D004719 ORTHO05D005519 4.8e-11 72.4 89 46.1
FvH4_6g34200 Fragaria vesca HOM05D004719 ORTHO05D005519 2.4e-10 70.1 54 61.1
FAN16G3662 Fragaria x ananassa HOM05D004719 ORTHO05D005519 5.8e-09 65.5 79 46.8
CBR_g84869 Chara braunii HOM05D004719 ORTHO05D005519 1.3e-08 64.3 53 60.4
CDE09G0250 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 4.2e-07 59.3 50 56.0
FAN06G3132 Fragaria x ananassa HOM05D004719 ORTHO05D005519 2.1e-06 57.0 45 57.8
Hund30245 Selenicereus undatus HOM05D004719 ORTHO05D005519 6.0e-06 55.5 88 42.0
CBR_g83324 Chara braunii HOM05D004719 ORTHO05D005519 7.9e-06 55.1 71 43.7


User provided reference genes

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