Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g007160.1 Solanum lycopersicum HOM05D004111 ORTHO05D043450 5.8e-106 387.5 186 100.0
PGSC0003DMG400044110 Solanum tuberosum HOM05D004111 ORTHO05D005252 2.2e-57 226.1 298 45.6
Nitab4.5_0008523g0010 Nicotiana tabacum HOM05D004111 ORTHO05D005252 2.4e-35 152.9 304 34.5
Peaxi162Scf00498g00033 Petunia axillaris HOM05D004111 ORTHO05D005252 4.5e-34 148.7 303 35.3
COL.COLO4_18200 Corchorus olitorius HOM05D004111 ORTHO05D005252 8.5e-33 144.4 242 38.8
Solyc12g008850.3 Solanum lycopersicum HOM05D004111 ORTHO05D005252 2.5e-32 142.9 293 35.2
Sopen12g003780 Solanum pennellii HOM05D004111 ORTHO05D005252 2.5e-32 142.9 293 35.2
PGSC0003DMG400000338 Solanum tuberosum HOM05D004111 ORTHO05D005252 4.7e-31 138.7 298 34.6
Prupe.7G209800 Prunus persica HOM05D004111 ORTHO05D005252 1.0e-30 137.5 268 35.4
Manes.16G102100 Manihot esculenta HOM05D004111 ORTHO05D005252 1.8e-30 136.7 275 33.8
Aqoxy7G01214 Aquilegia oxysepala HOM05D004111 ORTHO05D005252 2.3e-30 136.3 218 38.1
Solyc07g039310.1 Solanum lycopersicum HOM05D004111 ORTHO05D005252 1.2e-29 134.0 291 33.0
Sopen07g018460 Solanum pennellii HOM05D004111 ORTHO05D005252 5.7e-29 131.7 291 32.6
CAN.G1241.23 Capsicum annuum HOM05D004111 ORTHO05D005252 1.7e-28 130.2 306 33.0
Lalb_Chr13g0299721 Lupinus albus HOM05D004111 ORTHO05D005252 8.3e-28 127.9 301 32.2
PGSC0003DMG400017833 Solanum tuberosum HOM05D004111 ORTHO05D005252 8.3e-28 127.9 290 32.4
Nitab4.5_0003310g0050 Nicotiana tabacum HOM05D004111 ORTHO05D005252 1.1e-27 127.5 305 32.8
CAN.G25.8 Capsicum annuum HOM05D004111 ORTHO05D005252 3.1e-27 125.9 309 31.7
Manes.03G033700 Manihot esculenta HOM05D004111 ORTHO05D005252 7.0e-27 124.8 311 30.5
Lalb_Chr07g0180841 Lupinus albus HOM05D004111 ORTHO05D005252 9.1e-27 124.4 307 31.3
Potri.006G151300 Populus trichocarpa HOM05D004111 ORTHO05D005252 9.1e-27 124.4 310 31.0
CDE02G3235 Ceratophyllum demersum HOM05D004111 ORTHO05D005252 2.0e-26 123.2 252 33.3
MD15G1206900 Malus domestica HOM05D004111 ORTHO05D005252 2.0e-26 123.2 310 31.0
arahy.Tifrunner.gnm1.ann1.0E9UWZ Arachis hypogaea HOM05D004111 ORTHO05D005252 2.7e-26 122.9 295 31.5
DCAR_011972 Daucus carota HOM05D004111 ORTHO05D005252 2.7e-26 122.9 306 31.7
Dinv36766 Davidia involucrata HOM05D004111 ORTHO05D005252 3.5e-26 122.5 314 30.3
PGSC0003DMG400021391 Solanum tuberosum HOM05D004111 ORTHO05D005252 3.5e-26 122.5 298 30.9
Hma1.2p1_2664F.1_g326440 Hydrangea macrophylla HOM05D004111 ORTHO05D005252 4.5e-26 122.1 292 30.8
arahy.Tifrunner.gnm1.ann1.0IF9U9 Arachis hypogaea HOM05D004111 ORTHO05D005252 7.7e-26 121.3 295 31.2
Cc06_g11400 Coffea canephora HOM05D004111 ORTHO05D005252 1.0e-25 120.9 321 31.5
Nitab4.5_0004978g0010 Nicotiana tabacum HOM05D004111 ORTHO05D005252 1.0e-25 120.9 304 31.9
Sopen05g016370 Solanum pennellii HOM05D004111 ORTHO05D005252 1.0e-25 120.9 292 31.2
Nitab4.5_0016456g0010 Nicotiana tabacum HOM05D004111 ORTHO05D005252 1.3e-25 120.6 299 31.8
GSVIVG01015201001 Vitis vinifera HOM05D004111 ORTHO05D005252 2.3e-25 119.8 275 33.5
Nitab4.5_0000095g0080 Nicotiana tabacum HOM05D004111 ORTHO05D005252 2.9e-25 119.4 311 31.5
Oeu042656.1 Olea europaea HOM05D004111 ORTHO05D005252 2.9e-25 119.4 304 31.9
Glyma.17G055000 Glycine max HOM05D004111 ORTHO05D005252 3.8e-25 119.0 308 30.5
VMungo1309G0774 Vigna mungo HOM05D004111 ORTHO05D005252 3.8e-25 119.0 326 29.8
Sabra06G0119800 Salix brachista HOM05D004111 ORTHO05D005252 5.0e-25 118.6 316 30.4
TAR624G1353 Trochodendron aralioides HOM05D004111 ORTHO05D005252 5.0e-25 118.6 316 30.7
CiPaw.03G216100 Carya illinoinensis HOM05D004111 ORTHO05D005252 6.6e-25 118.2 313 30.4
Lj6g0009922 Lotus japonicus HOM05D004111 ORTHO05D005252 6.6e-25 118.2 319 29.2
MD02G1079400 Malus domestica HOM05D004111 ORTHO05D005252 8.6e-25 117.9 312 29.8
Solyc05g018880.1 Solanum lycopersicum HOM05D004111 ORTHO05D005252 8.6e-25 117.9 292 30.8
Lalb_Chr12g0199781 Lupinus albus HOM05D004111 ORTHO05D005252 1.1e-24 117.5 307 29.6
SabraUnG0005600 Salix brachista HOM05D004111 ORTHO05D005252 1.5e-24 117.1 317 30.6
Peaxi162Scf01461g00001 Petunia axillaris HOM05D004111 ORTHO05D005252 1.9e-24 116.7 320 29.7
vmacro17231 Vaccinium macrocarpon HOM05D004111 ORTHO05D005252 1.9e-24 116.7 308 30.5
Ah.06g192090 Amaranthus hybridus HOM05D004111 ORTHO05D005252 2.5e-24 116.3 321 29.9
Lalb_Chr08g0232141 Lupinus albus HOM05D004111 ORTHO05D005252 2.5e-24 116.3 316 29.4
TAR383G0321 Trochodendron aralioides HOM05D004111 ORTHO05D005252 2.5e-24 116.3 318 30.5
Lalb_Chr11g0074611 Lupinus albus HOM05D004111 ORTHO05D005252 4.2e-24 115.5 316 29.4
Phvul.003G136900 Phaseolus vulgaris HOM05D004111 ORTHO05D005252 4.2e-24 115.5 313 29.1
Phvul.009G232400 Phaseolus vulgaris HOM05D004111 ORTHO05D005252 4.2e-24 115.5 326 28.5
TAR636G0804 Trochodendron aralioides HOM05D004111 ORTHO05D005252 4.2e-24 115.5 313 31.3
Haze_25913 Corylus avellana HOM05D004111 ORTHO05D005252 7.2e-24 114.8 316 30.4
Glyma.13G104100 Glycine max HOM05D004111 ORTHO05D005252 7.2e-24 114.8 311 29.6
QL01p049089 Quercus lobata HOM05D004111 ORTHO05D005252 9.5e-24 114.4 313 30.0
QL02p062674 Quercus lobata HOM05D004111 ORTHO05D005252 9.5e-24 114.4 313 30.0
AUR62033975 Chenopodium quinoa HOM05D004111 ORTHO05D005252 1.2e-23 114.0 330 29.7
Oeu006970.1 Olea europaea HOM05D004111 ORTHO05D005252 1.2e-23 114.0 300 31.3
TWI34G1056 Tripterygium wilfordii HOM05D004111 ORTHO05D005252 1.2e-23 114.0 316 29.4
vmacro06291 Vaccinium macrocarpon HOM05D004111 ORTHO05D005252 1.6e-23 113.6 313 29.7
Ciclev10007864m.g Citrus clementina HOM05D004111 ORTHO05D005252 2.8e-23 112.8 322 29.5
Cfa003086 Carpinus fangiana HOM05D004111 ORTHO05D005252 3.6e-23 112.5 316 30.1
FvH4_7g01430 Fragaria vesca HOM05D004111 ORTHO05D005252 3.6e-23 112.5 321 29.0
FAN06G2956 Fragaria x ananassa HOM05D004111 ORTHO05D005252 3.6e-23 112.5 321 29.0
Gorai.009G031500 Gossypium raimondii HOM05D004111 ORTHO05D005252 3.6e-23 112.5 317 29.3
PSO210G4135 Papaver somniferum HOM05D004111 ORTHO05D005252 3.6e-23 112.5 305 29.2
Glyma.15G169600 Glycine max HOM05D004111 ORTHO05D005252 4.7e-23 112.1 329 29.2
Rhsim03G0232300 Rhododendron simsii HOM05D004111 ORTHO05D005252 4.7e-23 112.1 303 29.7
CAN.G1785.3 Capsicum annuum HOM05D004111 ORTHO05D043450 6.1e-23 111.7 84 67.9
CAN.G4193.1 Capsicum annuum HOM05D004111 ORTHO05D005252 6.1e-23 111.7 314 30.9
Dinv42319 Davidia involucrata HOM05D004111 ORTHO05D005252 6.1e-23 111.7 267 33.3
PSO210G1393 Papaver somniferum HOM05D004111 ORTHO05D005252 6.1e-23 111.7 306 29.4
RcHm_v2.0_Chr2g0093331 Rosa chinensis HOM05D004111 ORTHO05D005252 6.1e-23 111.7 322 28.3
Thecc.09G089400 Theobroma cacao HOM05D004111 ORTHO05D005252 6.1e-23 111.7 318 29.9
Migut.L01492 Erythranthe guttata HOM05D004111 ORTHO05D005252 8.0e-23 111.3 288 30.9
TWI63G1616 Tripterygium wilfordii HOM05D004111 ORTHO05D005252 8.0e-23 111.3 318 29.2
Actinidia29901 Actinidia chinensis HOM05D004111 ORTHO05D005252 1.0e-22 110.9 303 30.7
FAN10G0602 Fragaria x ananassa HOM05D004111 ORTHO05D005252 1.4e-22 110.5 322 28.6
Gohir.A05G029900 Gossypium hirsutum HOM05D004111 ORTHO05D005252 1.4e-22 110.5 317 29.3
Gohir.D05G031300 Gossypium hirsutum HOM05D004111 ORTHO05D005252 1.4e-22 110.5 317 29.3
AUR62027508 Chenopodium quinoa HOM05D004111 ORTHO05D005252 1.8e-22 110.2 330 28.5
FAN01G2766 Fragaria x ananassa HOM05D004111 ORTHO05D005252 1.8e-22 110.2 322 28.9
FAN03G1185 Fragaria x ananassa HOM05D004111 ORTHO05D005252 2.3e-22 109.8 324 28.1
Nn6g35478 Nelumbo nucifera HOM05D004111 ORTHO05D005252 2.3e-22 109.8 322 29.8
VMungo1215G1868 Vigna mungo HOM05D004111 ORTHO05D005252 2.3e-22 109.8 313 28.4
Medtr2g039160 Medicago truncatula HOM05D004111 ORTHO05D005252 5.2e-22 108.6 297 30.3
HanXRQChr09g0238121 Helianthus annuus HOM05D004111 ORTHO05D005252 6.8e-22 108.2 303 30.4
MBI01_g16602_MAGBIO Magnolia biondii HOM05D004111 ORTHO05D005252 6.8e-22 108.2 307 28.0
EL10Ac8g19219 Beta vulgaris HOM05D004111 ORTHO05D005252 1.2e-21 107.5 328 29.0
TPR.G27541 Trifolium pratense HOM05D004111 ORTHO05D005252 1.5e-21 107.1 301 29.6
SalBow6G6598 Salvia bowleyana HOM05D004111 ORTHO05D005252 2.0e-21 106.7 277 28.5
Aa31LG2G20850 Aethionema arabicum HOM05D004111 ORTHO05D005252 3.4e-21 105.9 302 29.5
CANSAT56G0788 Cannabis sativa HOM05D004111 ORTHO05D005252 3.4e-21 105.9 327 28.7
Duzib150G0164 Durio zibethinus HOM05D004111 ORTHO05D005252 4.4e-21 105.5 317 28.7
vmacro17232 Vaccinium macrocarpon HOM05D004111 ORTHO05D005252 4.4e-21 105.5 308 28.2
PGR142G4166 Punica granatum HOM05D004111 ORTHO05D005252 5.7e-21 105.1 302 29.1
Duzib168G1590 Durio zibethinus HOM05D004111 ORTHO05D005252 7.5e-21 104.8 318 28.6
Eucgr.C00897 Eucalyptus grandis HOM05D004111 ORTHO05D005252 7.5e-21 104.8 318 28.6
THA.LOC104803973 Tarenaya hassleriana HOM05D004111 ORTHO05D005252 1.7e-20 103.6 311 29.6
ClCG11G001760 Citrullus lanatus HOM05D004111 ORTHO05D005252 2.2e-20 103.2 310 29.4
MELO3C004624.2 Cucumis melo HOM05D004111 ORTHO05D005252 2.2e-20 103.2 306 29.7
DCAR_010678 Daucus carota HOM05D004111 ORTHO05D005252 2.2e-20 103.2 303 27.7
Lsat_1_v5_gn_7_37140 Lactuca sativa HOM05D004111 ORTHO05D005252 2.8e-20 102.8 309 27.8
Psat1g141360 Pisum sativum HOM05D004111 ORTHO05D005252 2.8e-20 102.8 306 28.8
Sc08g0008470 Simmondsia chinensis HOM05D004111 ORTHO05D005252 2.8e-20 102.8 312 29.8
AT4G29720 Arabidopsis thaliana HOM05D004111 ORTHO05D005252 3.7e-20 102.4 293 29.4
Cpa.g.sc61.52 Carica papaya HOM05D004111 ORTHO05D005252 3.7e-20 102.4 310 29.7
MSTRG.6061 Avicennia marina HOM05D004111 ORTHO05D005252 4.9e-20 102.1 307 28.0
CsaV3_2G001470 Cucumis sativus L. HOM05D004111 ORTHO05D005252 4.9e-20 102.1 313 28.8
Thhalv10024841m.g Eutrema salsugineum HOM05D004111 ORTHO05D005252 8.3e-20 101.3 313 29.4
ECA240G0409 Erigeron canadensis HOM05D004111 ORTHO05D005252 1.1e-19 100.9 307 28.0
THA.LOC104814620 Tarenaya hassleriana HOM05D004111 ORTHO05D005252 1.4e-19 100.5 317 30.3
Glyma.09G063000 Glycine max HOM05D004111 ORTHO05D005252 3.1e-19 99.4 342 26.9
AL7G22590 Arabidopsis lyrata HOM05D004111 ORTHO05D005252 4.1e-19 99.0 297 28.6
A03p59020 Brassica napus HOM05D004111 ORTHO05D005252 5.4e-19 98.6 289 29.8
Gohir.A07G011100 Gossypium hirsutum HOM05D004111 ORTHO05D005252 5.4e-19 98.6 294 28.9
HanXRQChr10g0319311 Helianthus annuus HOM05D004111 ORTHO05D005252 7.0e-19 98.2 297 27.9
BolC1t00935H Brassica oleracea HOM05D004111 ORTHO05D005252 9.2e-19 97.8 311 28.3
CAN.G1785.2 Capsicum annuum HOM05D004111 ORTHO05D005252 1.6e-18 97.1 74 68.9
Sp7g27490 Schrenkiella parvula HOM05D004111 ORTHO05D005252 1.6e-18 97.1 315 28.6
Gohir.D07G011175 Gossypium hirsutum HOM05D004111 ORTHO05D005252 2.0e-18 96.7 294 28.6
Gorai.001G011800 Gossypium raimondii HOM05D004111 ORTHO05D005252 2.0e-18 96.7 294 28.6
arahy.Tifrunner.gnm1.ann1.5R9G89 Arachis hypogaea HOM05D004111 ORTHO05D005252 2.7e-18 96.3 69 68.1
Migut.J00618 Erythranthe guttata HOM05D004111 ORTHO05D005252 2.7e-18 96.3 286 28.3
C07p57070 Brassica napus HOM05D004111 ORTHO05D005252 4.5e-18 95.5 301 28.6
BolC7t46178H Brassica oleracea HOM05D004111 ORTHO05D005252 4.5e-18 95.5 301 28.6
BraA03t14962Z Brassica rapa HOM05D004111 ORTHO05D005252 4.5e-18 95.5 289 29.1
Carub.0007s1080 Capsella rubella HOM05D004111 ORTHO05D005252 5.9e-18 95.1 300 28.0
BcaC09g51749 Brassica carinata HOM05D004111 ORTHO05D005252 1.0e-17 94.4 315 27.3
BcaC09g52222 Brassica carinata HOM05D004111 ORTHO05D005252 1.0e-17 94.4 311 27.0
BcaNung00484 Brassica carinata HOM05D004111 ORTHO05D005252 1.0e-17 94.4 307 28.7
C01p09740 Brassica napus HOM05D004111 ORTHO05D005252 1.0e-17 94.4 311 27.0
Nn8g38866 Nelumbo nucifera HOM05D004111 ORTHO05D005252 1.0e-17 94.4 77 59.7
A01p08410 Brassica napus HOM05D004111 ORTHO05D005252 1.3e-17 94.0 311 27.0
BraA01t00789Z Brassica rapa HOM05D004111 ORTHO05D005252 1.3e-17 94.0 311 27.0
CiPaw.04G149300 Carya illinoinensis HOM05D004111 ORTHO05D005252 1.3e-17 94.0 77 61.0
Sed0015676 Sechium edule HOM05D004111 ORTHO05D005252 1.3e-17 94.0 295 27.5
SGA_v2.0_scaffold21G09380 Striga asiatica HOM05D004111 ORTHO05D005252 1.3e-17 94.0 306 26.5
HanXRQChr03g0060801 Helianthus annuus HOM05D004111 ORTHO05D005252 2.3e-17 93.2 310 27.7
vmacro17230 Vaccinium macrocarpon HOM05D004111 ORTHO05D005252 1.1e-16 90.9 69 63.8
ECA234G4608 Erigeron canadensis HOM05D004111 ORTHO05D005252 1.5e-16 90.5 318 28.0
SEGI_19847 Sequoiadendron giganteum HOM05D004111 ORTHO05D005252 1.5e-16 90.5 101 47.5
Atru.chr7.1589 Acer truncatum HOM05D004111 ORTHO05D005252 2.5e-16 89.7 79 57.0
MD16G1255500 Malus domestica HOM05D004111 ORTHO05D005252 1.6e-15 87.0 76 56.6
MD01G1012400 Malus domestica HOM05D004111 ORTHO05D005252 3.6e-15 85.9 76 55.3
CARHR237570 Cardamine hirsuta HOM05D004111 ORTHO05D005252 6.1e-15 85.1 74 63.5
CANSAT25G0955 Cannabis sativa HOM05D004111 ORTHO05D005252 8.0e-15 84.7 82 56.1
MSTRG.10564 Avicennia marina HOM05D004111 ORTHO05D005252 6.8e-14 81.6 73 53.4
SEGI_30114 Sequoiadendron giganteum HOM05D004111 ORTHO05D005252 6.8e-14 81.6 75 50.7
SGA_v2.0_scaffold62G21608 Striga asiatica HOM05D004111 ORTHO05D005252 2.2e-12 76.6 69 55.1
ATR0749G083 Amborella trichopoda HOM05D004111 ORTHO05D005252 2.9e-12 76.3 66 54.5
Nitab4.5_0009388g0030 Nicotiana tabacum HOM05D011106 ORTHO05D010952 3.7e-12 75.9 64 60.9
Zm00001eb155140 Zea mays HOM05D004111 ORTHO05D005252 6.4e-12 75.1 74 51.4
SMO271G0058 Selaginella moellendorffii HOM05D004111 ORTHO05D005252 1.9e-11 73.6 57 61.4
Os01g0710200 Oryza sativa ssp. japonica HOM05D004111 ORTHO05D005252 4.1e-11 72.4 72 52.8
HPP92_024007 Vanilla planifolia HOM05D004111 ORTHO05D005252 6.0e-10 68.6 69 49.3
Mapoly0103s0017 Marchantia polymorpha HOM05D004111 ORTHO05D005252 1.9e-08 63.5 79 44.3
HPP92_003973 Vanilla planifolia HOM05D004111 ORTHO05D005252 4.0e-06 55.8 66 42.4


User provided reference genes

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