Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g093920.2 Solanum lycopersicum HOM05D004649 ORTHO05D005446 9.9e-264 912.9 465 100.0
Sopen02g038570 Solanum pennellii HOM05D004649 ORTHO05D005446 4.9e-239 830.9 429 98.8
PGSC0003DMG400020222 Solanum tuberosum HOM05D004649 ORTHO05D005446 1.6e-237 825.9 429 97.9
Nitab4.5_0001031g0020 Nicotiana tabacum HOM05D004649 ORTHO05D005446 3.1e-217 758.4 429 88.3
CAN.G473.77 Capsicum annuum HOM05D004649 ORTHO05D005446 2.1e-213 745.7 429 87.2
Nitab4.5_0000559g0250 Nicotiana tabacum HOM05D004649 ORTHO05D005446 2.7e-200 702.2 429 82.3
Dinv33366 Davidia involucrata HOM05D004649 ORTHO05D005446 1.1e-198 696.8 429 80.9
Dinv25679 Davidia involucrata HOM05D004649 ORTHO05D005446 9.4e-198 693.7 435 80.2
CSS0030171 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 1.4e-196 689.9 429 79.0
CSS0047966 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 4.0e-196 688.3 429 79.0
Nitab4.5_0006819g0030 Nicotiana tabacum HOM05D004649 ORTHO05D005446 2.2e-194 682.6 432 80.3
Peaxi162Scf00420g00411 Petunia axillaris HOM05D004649 ORTHO05D005446 8.3e-194 680.6 440 81.8
MSTRG.15559 Avicennia marina HOM05D004649 ORTHO05D005446 6.6e-191 671.0 429 78.1
Nitab4.5_0002887g0140 Nicotiana tabacum HOM05D004649 ORTHO05D005446 7.2e-190 667.5 429 80.7
GSVIVG01001824001 Vitis vinifera HOM05D004649 ORTHO05D005446 1.2e-189 666.8 425 76.5
Actinidia05924 Actinidia chinensis HOM05D004649 ORTHO05D005446 2.3e-188 662.5 430 77.0
TAR371G0838 Trochodendron aralioides HOM05D004649 ORTHO05D005446 1.4e-185 653.3 425 76.5
Ciclev10015345m.g Citrus clementina HOM05D004649 ORTHO05D005446 2.4e-185 652.5 425 76.7
Migut.K01446 Erythranthe guttata HOM05D004649 ORTHO05D005446 9.2e-185 650.6 429 76.0
vmacro05936 Vaccinium macrocarpon HOM05D004649 ORTHO05D005446 9.2e-185 650.6 430 74.7
QL02p072453 Quercus lobata HOM05D004649 ORTHO05D005446 1.7e-183 646.4 424 75.7
DCAR_011306 Daucus carota HOM05D004649 ORTHO05D005446 2.9e-183 645.6 430 73.7
CANSAT64G0679 Cannabis sativa HOM05D004649 ORTHO05D005446 3.9e-183 645.2 425 76.2
SGA_v2.0_scaffold154G37160 Striga asiatica HOM05D004649 ORTHO05D005446 5.0e-183 644.8 429 74.8
Rhsim10G0008900 Rhododendron simsii HOM05D004649 ORTHO05D005446 1.1e-182 643.7 430 74.4
HanXRQChr14g0450901 Helianthus annuus HOM05D004649 ORTHO05D005446 3.3e-182 642.1 429 72.5
Thecc.04G029900 Theobroma cacao HOM05D004649 ORTHO05D005446 3.3e-182 642.1 422 74.9
Gorai.012G088900 Gossypium raimondii HOM05D004649 ORTHO05D005446 4.3e-182 641.7 425 75.1
CiPaw.04G034500 Carya illinoinensis HOM05D004649 ORTHO05D005446 1.2e-181 640.2 421 75.1
CAN.G1965.13 Capsicum annuum HOM05D004649 ORTHO05D005446 1.6e-181 639.8 424 75.5
TWI36G0899 Tripterygium wilfordii HOM05D004649 ORTHO05D005446 2.8e-181 639.0 425 74.4
Potri.001G334200 Populus trichocarpa HOM05D004649 ORTHO05D005446 3.6e-181 638.6 425 73.4
Atru.chr6.2512 Acer truncatum HOM05D004649 ORTHO05D005446 8.0e-181 637.5 425 73.6
Gohir.D04G079000 Gossypium hirsutum HOM05D004649 ORTHO05D005446 8.0e-181 637.5 425 74.6
Gohir.A05G340700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.0e-180 637.1 425 74.4
Glyma.05G075400 Glycine max HOM05D004649 ORTHO05D005446 2.3e-180 636.0 425 73.9
MELO3C008213.2 Cucumis melo HOM05D004649 ORTHO05D005446 2.6e-179 632.5 425 73.9
Cc07_g00570 Coffea canephora HOM05D004649 ORTHO05D005446 5.8e-179 631.3 433 74.4
Duzib264G0046 Durio zibethinus HOM05D004649 ORTHO05D005446 5.8e-179 631.3 425 74.1
Manes.17G106100 Manihot esculenta HOM05D004649 ORTHO05D005446 5.8e-179 631.3 425 73.9
Gorai.006G040000 Gossypium raimondii HOM05D004649 ORTHO05D005446 7.5e-179 630.9 425 72.9
Prupe.3G302400 Prunus persica HOM05D004649 ORTHO05D005446 9.8e-179 630.6 425 74.1
Lsat_1_v5_gn_2_93941 Lactuca sativa HOM05D004649 ORTHO05D005446 2.2e-178 629.4 429 72.3
RcHm_v2.0_Chr2g0174731 Rosa chinensis HOM05D004649 ORTHO05D005446 2.2e-178 629.4 422 73.0
AUR62036815 Chenopodium quinoa HOM05D004649 ORTHO05D005446 2.9e-178 629.0 425 73.9
Glyma.19G075700 Glycine max HOM05D004649 ORTHO05D005446 4.9e-178 628.2 425 73.4
AUR62033709 Chenopodium quinoa HOM05D004649 ORTHO05D005446 1.1e-177 627.1 425 73.2
CsaV3_6G001150 Cucumis sativus L. HOM05D004649 ORTHO05D005446 1.4e-177 626.7 425 73.2
Gohir.A09G034200 Gossypium hirsutum HOM05D004649 ORTHO05D005446 9.2e-177 624.0 425 72.0
FAN09G0187 Fragaria x ananassa HOM05D004649 ORTHO05D005446 2.0e-176 622.9 422 72.3
Peaxi162Scf00700g00129 Petunia axillaris HOM05D004649 ORTHO05D005446 3.5e-176 622.1 423 76.8
VMungo1080G0439 Vigna mungo HOM05D004649 ORTHO05D005446 3.5e-176 622.1 425 72.7
FAN02G2492 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.0e-175 620.5 422 72.3
FvH4_6g52990 Fragaria vesca HOM05D004649 ORTHO05D005446 1.7e-175 619.8 422 72.0
HanXRQChr07g0198311 Helianthus annuus HOM05D004649 ORTHO05D005446 1.1e-174 617.1 431 71.0
ECA238G0199 Erigeron canadensis HOM05D004649 ORTHO05D005446 2.5e-174 615.9 427 71.0
Phvul.004G055700 Phaseolus vulgaris HOM05D004649 ORTHO05D005446 3.3e-174 615.5 425 71.5
Lalb_Chr02g0157841 Lupinus albus HOM05D004649 ORTHO05D005446 4.3e-174 615.1 427 73.1
Duzib147G0539 Durio zibethinus HOM05D004649 ORTHO05D005446 3.6e-173 612.1 425 72.5
MD17G1015500 Malus domestica HOM05D004649 ORTHO05D005446 3.6e-173 612.1 425 71.1
Ca_04417_v3 Cicer arietinum L. HOM05D004649 ORTHO05D005446 1.4e-172 610.1 426 71.4
MD09G1015400 Malus domestica HOM05D004649 ORTHO05D005446 4.0e-172 608.6 425 71.1
Gohir.D09G035100 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.6e-171 605.9 425 70.8
arahy.Tifrunner.gnm1.ann1.2RTQ1W Arachis hypogaea HOM05D004649 ORTHO05D005446 3.4e-171 605.5 427 71.4
ClCG11G006900 Citrullus lanatus HOM05D004649 ORTHO05D005446 4.4e-171 605.1 459 68.0
PGR142G2348 Punica granatum HOM05D004649 ORTHO05D005446 9.8e-171 604.0 428 70.3
Cpa.g.sc130.9 Carica papaya HOM05D004649 ORTHO05D005446 1.7e-170 603.2 426 71.4
Lj7C608T4 Lonicera japonica HOM05D004649 ORTHO05D005446 8.3e-170 600.9 429 72.3
CiPaw.03G052200 Carya illinoinensis HOM05D004649 ORTHO05D005446 4.1e-169 598.6 425 70.6
FAN05G5354 Fragaria x ananassa HOM05D004649 ORTHO05D005446 9.2e-169 597.4 464 65.9
COL.COLO4_08766 Corchorus olitorius HOM05D004649 ORTHO05D005446 3.5e-168 595.5 422 72.3
arahy.Tifrunner.gnm1.ann1.B3K3FC Arachis hypogaea HOM05D004649 ORTHO05D005446 3.0e-167 592.4 434 69.6
TPR.G7524 Trifolium pratense HOM05D004649 ORTHO05D005446 1.9e-166 589.7 427 69.6
Sed0002339 Sechium edule HOM05D004649 ORTHO05D005446 1.6e-165 586.6 425 68.9
Medtr6g023350 Medicago truncatula HOM05D004649 ORTHO05D005446 2.8e-165 585.9 427 69.1
Aqoxy5G03494 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 1.2e-163 580.5 429 68.1
CDE09G0552 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 1.3e-162 577.0 425 66.8
Haze_14832 Corylus avellana HOM05D004649 ORTHO05D005446 1.3e-162 577.0 458 65.9
Eucgr.I01664 Eucalyptus grandis HOM05D004649 ORTHO05D005446 2.2e-162 576.2 403 70.2
Lj1g0022023 Lotus japonicus HOM05D004649 ORTHO05D005446 4.9e-162 575.1 427 67.9
THA.LOC104821114 Tarenaya hassleriana HOM05D004649 ORTHO05D005446 4.9e-162 575.1 426 67.8
HPP92_017768 Vanilla planifolia HOM05D004649 ORTHO05D005446 5.4e-161 571.6 422 66.6
PSO782G5348 Papaver somniferum HOM05D004649 ORTHO05D005446 3.5e-160 568.9 426 67.8
Psat1g084880 Pisum sativum HOM05D004649 ORTHO05D005446 9.6e-158 560.8 427 66.5
Hund06757 Selenicereus undatus HOM05D004649 ORTHO05D005446 2.4e-156 556.2 425 67.8
Aa31LG11G15040 Aethionema arabicum HOM05D004649 ORTHO05D005446 7.6e-155 551.2 426 66.0
unitig_52.g17652 Utricularia gibba HOM05D004649 ORTHO05D005446 1.3e-154 550.4 440 65.9
Thhalv10013615m.g Eutrema salsugineum HOM05D004649 ORTHO05D005446 3.8e-154 548.9 430 64.9
C02p06640 Brassica napus HOM05D004649 ORTHO05D005446 4.9e-154 548.5 427 64.4
Nn2g10549 Nelumbo nucifera HOM05D004649 ORTHO05D005446 1.9e-153 546.6 425 65.6
Sc07g0004210 Simmondsia chinensis HOM05D004649 ORTHO05D005446 1.9e-153 546.6 383 73.6
Sp6g29780 Schrenkiella parvula HOM05D004649 ORTHO05D005446 5.4e-153 545.0 426 64.1
BraA02t05210Z Brassica rapa HOM05D004649 ORTHO05D005446 1.2e-152 543.9 426 63.4
BcaC03g13505 Brassica carinata HOM05D004649 ORTHO05D005446 1.6e-152 543.5 427 63.9
A02p02400 Brassica napus HOM05D005656 ORTHO05D007094 1.6e-152 543.5 425 63.3
BolC2t06607H Brassica oleracea HOM05D005656 ORTHO05D005446 2.1e-152 543.1 426 63.8
BcaNung03172 Brassica carinata HOM05D004649 ORTHO05D005446 2.7e-152 542.7 423 64.1
Gohir.D10G084700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 4.6e-152 542.0 425 65.2
Os08g0119000 Oryza sativa ssp. japonica HOM05D004649 ORTHO05D005446 8.7e-151 537.7 426 65.5
Zm00001eb261210 Zea mays HOM05D004649 ORTHO05D005446 2.5e-150 536.2 425 64.7
Manes.15G158000 Manihot esculenta HOM05D004649 ORTHO05D005446 1.1e-148 530.8 311 82.0
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 3.1e-148 529.3 425 62.8
DCAR_015086 Daucus carota HOM05D004649 ORTHO05D005446 3.1e-148 529.3 422 60.9
C09p62910 Brassica napus HOM05D005656 ORTHO05D007094 5.3e-148 528.5 425 62.6
BolC9t59128H Brassica oleracea HOM05D005656 ORTHO05D007094 5.3e-148 528.5 425 62.6
BcaB08g36970 Brassica carinata HOM05D004649 ORTHO05D005446 7.6e-147 524.6 426 62.4
Potri.017G066300 Populus trichocarpa HOM05D004649 ORTHO05D005446 7.6e-147 524.6 324 78.7
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 9.9e-147 524.2 425 62.1
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 2.2e-146 523.1 425 62.6
Carub.0006s1245 Capsella rubella HOM05D004649 ORTHO05D005446 3.8e-146 522.3 426 62.0
A03p06510 Brassica napus HOM05D004649 ORTHO05D005446 4.9e-146 521.9 426 62.4
BraA03t09983Z Brassica rapa HOM05D004649 ORTHO05D005446 3.2e-145 519.2 426 62.2
Gorai.011G092400 Gossypium raimondii HOM05D004649 ORTHO05D005446 4.2e-145 518.8 425 64.5
AT5G14250 Arabidopsis thaliana HOM05D004649 ORTHO05D005446 1.2e-144 517.3 426 61.7
BcaB01g06336 Brassica carinata HOM05D004649 ORTHO05D005446 2.3e-143 513.1 426 61.0
Sed0000018 Sechium edule HOM05D004649 ORTHO05D005446 2.5e-142 509.6 425 60.7
AL6G24930 Arabidopsis lyrata HOM05D004649 ORTHO05D005446 1.8e-140 503.4 383 65.8
Aqoxy3G01472 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 2.0e-139 500.0 426 61.0
CARHR199090 Cardamine hirsuta HOM05D004649 ORTHO05D005446 2.9e-138 496.1 395 64.6
ATR0124G048 Amborella trichopoda HOM05D004649 ORTHO05D005446 3.8e-138 495.7 353 68.8
CDE02G4363 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 3.5e-136 489.2 447 58.8
SMO351G0195 Selaginella moellendorffii HOM05D004649 ORTHO05D005446 1.6e-125 453.8 424 55.2
Pp3c11_20060 Physcomitrium patens HOM05D004649 ORTHO05D005446 2.1e-125 453.4 427 53.6
Mapoly0005s0216 Marchantia polymorpha HOM05D004649 ORTHO05D005446 1.1e-124 451.1 427 53.9
AagrBONN_evm.TU.Sc2ySwM_368.1057 Anthoceros agrestis HOM05D004649 ORTHO05D005446 7.6e-123 444.9 451 51.9
EL10As11g23981 Beta vulgaris HOM05D004649 ORTHO05D005446 2.5e-121 439.9 390 61.8
PSO017G3153 Papaver somniferum HOM05D004649 ORTHO05D005446 5.1e-119 432.2 400 59.0
CBR_g75710 Chara braunii HOM05D004649 ORTHO05D005446 1.0e-114 417.9 430 52.1
Hma1.2p1_0571F.1_g180750 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 3.2e-113 412.9 239 85.4
Sabra16G0215300 Salix brachista HOM05D004649 ORTHO05D005446 6.7e-111 405.2 241 82.6
Nn3g16527 Nelumbo nucifera HOM05D004649 ORTHO05D005446 2.6e-107 393.3 284 68.3
Actinidia36180 Actinidia chinensis HOM05D004649 ORTHO05D005446 3.2e-105 386.3 431 54.3
Zm00001eb173540 Zea mays HOM05D004649 ORTHO05D005446 4.8e-101 372.5 324 59.9
BcaB01g05123 Brassica carinata HOM05D004649 ORTHO05D005446 6.3e-101 372.1 355 55.8
C03p07530 Brassica napus HOM05D004649 ORTHO05D005446 7.7e-99 365.2 356 55.1
Cre16.g671100 Chlamydomonas reinhardtii HOM05D004649 ORTHO05D005446 2.0e-75 287.3 430 39.5
CAN.G473.64 Capsicum annuum HOM05D004649 ORTHO05D005446 4.0e-71 273.1 192 75.0
Gohir.A01G185660 Gossypium hirsutum HOM05D004649 ORTHO05D005446 3.2e-68 263.5 214 64.0
C09p61600 Brassica napus HOM05D004649 ORTHO05D005446 6.6e-66 255.8 325 46.2
PRCOL_00002547 Prasinoderma coloniale HOM05D004649 ORTHO05D005446 3.7e-61 240.0 333 39.0
A03p07400 Brassica napus HOM05D004649 ORTHO05D005446 6.8e-55 219.2 194 59.8
BcaC04g18970 Brassica carinata HOM05D004649 ORTHO05D005446 2.2e-53 214.2 359 40.1
BraA03t10063Z Brassica rapa HOM05D004649 ORTHO05D005446 7.3e-49 199.1 194 54.6
BolC9t59028H Brassica oleracea HOM05D004649 ORTHO05D005446 3.6e-48 196.8 304 41.4
SEGI_26946 Sequoiadendron giganteum HOM05D004649 ORTHO05D005446 2.0e-46 191.0 143 65.7
Sabra07G0059200 Salix brachista HOM05D004649 ORTHO05D005446 1.1e-44 185.3 251 45.8
MCO12G022 Micromonas commoda HOM05D004649 ORTHO05D005446 6.2e-32 142.9 323 29.7
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 1.1e-31 142.1 196 44.4
BolC3t13254H Brassica oleracea HOM05D004649 ORTHO05D005446 3.1e-31 140.6 105 68.6
FAN09G3197 Fragaria x ananassa HOM05D004649 ORTHO05D005446 6.7e-26 122.9 122 50.0
BcaB08g36975 Brassica carinata HOM05D005656 ORTHO05D007094 3.6e-24 117.1 76 71.1
Duzib268G1750 Durio zibethinus HOM05D004649 ORTHO05D005446 1.5e-22 111.7 124 46.8
QL12p000006 Quercus lobata HOM05D004649 ORTHO05D005446 1.5e-22 111.7 78 65.4
QL12p000135 Quercus lobata HOM05D004649 ORTHO05D005446 1.5e-22 111.7 78 65.4
Hma1.2p1_0571F.1_g180740 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 2.8e-16 90.9 66 69.7
Oeu042415.1 Olea europaea HOM05D004649 ORTHO05D005446 3.1e-15 87.4 48 87.5
Aqoxy5G03476 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 3.2e-12 77.4 120 44.2
FvH4_2g01181 Fragaria vesca HOM05D000564 ORTHO05D005446 1.5e-09 68.6 53 67.9
ECA232G4246 Erigeron canadensis HOM05D004649 ORTHO05D005446 4.3e-09 67.0 53 60.4
EL10As11g23980 Beta vulgaris HOM05D004649 ORTHO05D005446 9.6e-09 65.9 37 75.7
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 1.3e-08 65.5 49 65.3
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 1.3e-08 65.5 49 65.3
FAN14G5770 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.3e-08 65.5 133 36.1
Thhalv10007479m.g Eutrema salsugineum HOM05D002716 ORTHO05D003324 4.8e-08 63.5 202 26.2
AL2G36010 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 6.3e-08 63.2 205 27.8
Carub.0002s2288 Capsella rubella HOM05D002716 ORTHO05D003324 8.2e-08 62.8 205 27.3
CARHR069530 Cardamine hirsuta HOM05D002716 ORTHO05D003324 8.2e-08 62.8 205 28.8
Sp1g17970 Schrenkiella parvula HOM05D002716 ORTHO05D003324 8.2e-08 62.8 202 26.2
AT1G75990 Arabidopsis thaliana HOM05D002716 ORTHO05D003324 1.1e-07 62.4 205 27.3
Carub.0001s1973 Capsella rubella HOM05D002716 ORTHO05D003324 1.1e-07 62.4 202 26.2
CARHR020700 Cardamine hirsuta HOM05D002716 ORTHO05D003324 1.1e-07 62.4 202 26.2
AT1G20200 Arabidopsis thaliana HOM05D002716 ORTHO05D003324 1.4e-07 62.0 202 26.2
BcaB03g12876 Brassica carinata HOM05D002716 ORTHO05D003324 1.4e-07 62.0 202 26.2
AL1G33040 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 1.8e-07 61.6 202 26.2
A07p41500 Brassica napus HOM05D002716 ORTHO05D003324 2.4e-07 61.2 205 29.3
BraA07t31682Z Brassica rapa HOM05D002716 ORTHO05D003324 2.4e-07 61.2 205 29.3
FvH4_6g52500 Fragaria vesca HOM05D004649 ORTHO05D005446 2.4e-07 61.2 48 58.3
BcaC08g47308 Brassica carinata HOM05D002716 ORTHO05D003324 3.1e-07 60.8 205 27.8
C06p49910 Brassica napus HOM05D002716 ORTHO05D003324 3.1e-07 60.8 205 27.8
BolC6t40029H Brassica oleracea HOM05D002716 ORTHO05D003324 3.1e-07 60.8 205 27.8
Sp5g31110 Schrenkiella parvula HOM05D002716 ORTHO05D003324 3.1e-07 60.8 205 27.3


User provided reference genes

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