Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g093620.2 Solanum lycopersicum HOM05D006844 ORTHO05D008504 1.5e-178 630.2 555 100.0
Sopen02g038250 Solanum pennellii HOM05D006844 ORTHO05D008504 4.8e-172 608.6 555 98.0
PGSC0003DMG400012620 Solanum tuberosum HOM05D006844 ORTHO05D008504 1.1e-171 607.4 555 97.5
CAN.G473.42 Capsicum annuum HOM05D006844 ORTHO05D008504 1.2e-162 577.4 555 85.8
Nitab4.5_0001031g0200 Nicotiana tabacum HOM05D006844 ORTHO05D008504 4.3e-157 558.9 553 92.6
Peaxi162Scf00420g00214 Petunia axillaris HOM05D006844 ORTHO05D008504 1.5e-154 550.4 549 90.2
Nitab4.5_0000935g0090 Nicotiana tabacum HOM05D006844 ORTHO05D008504 3.2e-144 516.2 553 82.8
MSTRG.24057 Avicennia marina HOM05D006844 ORTHO05D008504 1.4e-126 457.6 544 82.7
Cc07_g00220 Coffea canephora HOM05D006844 ORTHO05D008504 1.7e-124 450.7 548 82.8
Cfa007302 Carpinus fangiana HOM05D006844 ORTHO05D008504 2.0e-122 443.7 554 67.5
Migut.H00039 Erythranthe guttata HOM05D006844 ORTHO05D008504 1.3e-121 441.0 557 80.6
TWI12G0359 Tripterygium wilfordii HOM05D006844 ORTHO05D008504 2.2e-121 440.3 550 66.4
Manes.17G108800 Manihot esculenta HOM05D006844 ORTHO05D008504 1.8e-118 430.6 553 77.4
Haze_14791 Corylus avellana HOM05D006844 ORTHO05D008504 3.0e-118 429.9 554 66.8
Dinv33400 Davidia involucrata HOM05D006844 ORTHO05D008504 3.0e-118 429.9 328 65.2
SalBow1G4663 Salvia bowleyana HOM05D006844 ORTHO05D008504 6.8e-118 428.7 553 77.6
Lj7P604T32 Lonicera japonica HOM05D006844 ORTHO05D008504 4.4e-117 426.0 540 80.6
Actinidia36147 Actinidia chinensis HOM05D006844 ORTHO05D008504 2.0e-114 417.2 553 76.3
Potri.017G070800 Populus trichocarpa HOM05D006844 ORTHO05D008504 5.5e-112 409.1 553 77.9
Nn4g22496 Nelumbo nucifera HOM05D006844 ORTHO05D008504 1.2e-111 407.9 556 79.7
TAR622G0321 Trochodendron aralioides HOM05D006844 ORTHO05D008504 2.8e-111 406.8 553 75.8
Atru.chr6.2466 Acer truncatum HOM05D006844 ORTHO05D008504 1.0e-110 404.8 552 75.5
Duzib147G1239 Durio zibethinus HOM05D006844 ORTHO05D008504 2.3e-110 403.7 553 77.0
Thecc.04G024500 Theobroma cacao HOM05D006844 ORTHO05D008504 2.3e-110 403.7 553 75.8
Gohir.D04G080600 Gossypium hirsutum HOM05D006844 ORTHO05D008504 4.0e-110 402.9 553 78.5
Gorai.012G091600 Gossypium raimondii HOM05D006844 ORTHO05D008504 1.2e-109 401.4 553 78.5
Gohir.A05G342700 Gossypium hirsutum HOM05D006844 ORTHO05D008504 2.0e-109 400.6 547 78.6
Ciclev10014357m.g Citrus clementina HOM05D006844 ORTHO05D008504 2.6e-109 400.2 552 78.3
vmacro05902 Vaccinium macrocarpon HOM05D006844 ORTHO05D008504 3.4e-109 399.8 329 70.5
DCAR_011279 Daucus carota HOM05D006844 ORTHO05D008504 5.7e-109 399.1 551 77.5
Lj1g0000789 Lotus japonicus HOM05D006844 ORTHO05D008504 5.7e-109 399.1 553 73.8
Hma1.2p1_0818F.1_g223470 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 9.8e-109 398.3 321 73.5
CiPaw.03G048400 Carya illinoinensis HOM05D006844 ORTHO05D008504 2.8e-108 396.7 554 77.3
PGR083G0468 Punica granatum HOM05D006844 ORTHO05D008504 3.7e-108 396.4 329 71.7
CsaV3_3G027490 Cucumis sativus L. HOM05D006844 ORTHO05D008504 6.3e-108 395.6 329 72.9
SGA_v2.0_scaffold135G34928 Striga asiatica HOM05D006844 ORTHO05D008504 6.3e-108 395.6 549 66.5
Lsat_1_v5_gn_2_93460 Lactuca sativa HOM05D006844 ORTHO05D008504 8.3e-108 395.2 330 71.5
Sc07g0004300 Simmondsia chinensis HOM05D006844 ORTHO05D008504 8.3e-108 395.2 553 70.3
Sabra06G0144800 Salix brachista HOM05D006844 ORTHO05D008504 1.1e-107 394.8 553 75.0
Sabra17G0063000 Salix brachista HOM05D006844 ORTHO05D008504 1.1e-107 394.8 553 75.0
TAR374G0379 Trochodendron aralioides HOM05D006844 ORTHO05D008504 1.4e-107 394.4 318 74.5
HanXRQChr07g0199131 Helianthus annuus HOM05D006844 ORTHO05D008504 3.1e-107 393.3 330 71.2
CSS0042583 Camellia sinensis var. sinensis HOM05D006844 ORTHO05D008504 4.1e-107 392.9 329 72.9
QL02p073443 Quercus lobata HOM05D006844 ORTHO05D008504 4.1e-107 392.9 318 73.6
CSS0048025 Camellia sinensis var. sinensis HOM05D006844 ORTHO05D008504 5.4e-107 392.5 329 72.9
ClCG05G013040 Citrullus lanatus HOM05D006844 ORTHO05D008504 7.0e-107 392.1 329 71.7
Rhsim10G0012800 Rhododendron simsii HOM05D006844 ORTHO05D008504 9.2e-107 391.7 551 78.8
Prupe.2G095300 Prunus persica HOM05D006844 ORTHO05D008504 5.9e-106 389.0 316 59.5
ECA238G2031 Erigeron canadensis HOM05D004726 ORTHO05D005986 7.8e-106 388.7 330 70.3
COL.COLO4_29236 Corchorus olitorius HOM05D006844 ORTHO05D008504 1.0e-105 388.3 553 77.9
PSO478G2097 Papaver somniferum HOM05D006844 ORTHO05D008504 1.3e-105 387.9 553 71.1
PSO017G3485 Papaver somniferum HOM05D006844 ORTHO05D008504 1.7e-105 387.5 553 70.9
FvH4_7g06820 Fragaria vesca HOM05D006844 ORTHO05D008504 3.8e-105 386.3 317 65.3
FAN01G2612 Fragaria x ananassa HOM05D006844 ORTHO05D008504 5.0e-105 386.0 317 70.0
MD17G1020100 Malus domestica HOM05D006844 ORTHO05D008504 1.1e-104 384.8 315 72.4
arahy.Tifrunner.gnm1.ann1.QHJM8I Arachis hypogaea HOM05D006844 ORTHO05D008504 1.5e-104 384.4 553 74.7
MELO3C014826.2 Cucumis melo HOM05D006844 ORTHO05D008504 1.5e-104 384.4 329 71.4
MBI13_g29568_MAGBIO Magnolia biondii HOM05D006844 ORTHO05D008504 1.5e-104 384.4 316 73.7
RcHm_v2.0_Chr1g0336521 Rosa chinensis HOM05D006844 ORTHO05D008504 1.9e-104 384.0 319 72.1
vmacro05904 Vaccinium macrocarpon HOM05D006844 ORTHO05D008504 1.9e-104 384.0 550 76.2
MD09G1019500 Malus domestica HOM05D006844 ORTHO05D008504 5.6e-104 382.5 315 72.1
Eucgr.J02268 Eucalyptus grandis HOM05D006844 ORTHO05D008504 7.3e-104 382.1 328 71.0
FAN03G0177 Fragaria x ananassa HOM05D006844 ORTHO05D008504 9.5e-104 381.7 317 71.9
Sp6g29690 Schrenkiella parvula HOM05D006844 ORTHO05D008504 9.5e-104 381.7 317 73.5
Sed0025706 Sechium edule HOM05D006844 ORTHO05D008504 2.1e-103 380.6 316 72.5
AUR62035998 Chenopodium quinoa HOM05D006844 ORTHO05D008504 1.0e-102 378.3 331 68.3
FAN10G3353 Fragaria x ananassa HOM05D006844 ORTHO05D008504 4.0e-102 376.3 317 71.3
Hund11892 Selenicereus undatus HOM05D006844 ORTHO05D008504 4.0e-102 376.3 329 69.9
CARHR198970 Cardamine hirsuta HOM05D006844 ORTHO05D008504 2.0e-101 374.0 317 72.2
Hma1.2p1_1484F.1_g286480 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 7.5e-101 372.1 566 66.6
Glyma.16G066300 Glycine max HOM05D006844 ORTHO05D008504 6.4e-100 369.0 553 73.1
THA.LOC104821106 Tarenaya hassleriana HOM05D006844 ORTHO05D008504 6.4e-100 369.0 312 72.1
Hma1.2p1_1484F.1_g286470 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 8.3e-100 368.6 553 47.4
Hma1.2p1_1484F.1_g286476 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 8.3e-100 368.6 553 47.4
BcaB01g06378 Brassica carinata HOM05D006844 ORTHO05D008504 1.4e-99 367.9 315 72.7
Thhalv10015672m.g Eutrema salsugineum HOM05D006844 ORTHO05D008504 1.4e-99 367.9 312 73.4
Phvul.008G145600 Phaseolus vulgaris HOM05D006844 ORTHO05D008504 7.0e-99 365.5 555 74.1
AL6G25060 Arabidopsis lyrata HOM05D006844 ORTHO05D008504 9.2e-99 365.2 312 65.4
Carub.0005s1288 Capsella rubella HOM05D006844 ORTHO05D008504 1.6e-98 364.4 317 71.3
Aqoxy3G01340 Aquilegia oxysepala HOM05D006844 ORTHO05D008504 2.0e-98 364.0 553 72.7
Aa31LG11G15140 Aethionema arabicum HOM05D006844 ORTHO05D008504 3.5e-98 363.2 312 71.2
VMungo1080G0705 Vigna mungo HOM05D006844 ORTHO05D008504 7.8e-98 362.1 555 73.3
Ca_03833_v3 Cicer arietinum L. HOM05D006844 ORTHO05D008504 1.0e-97 361.7 330 67.3
AT3G46610 Arabidopsis thaliana HOM05D006844 ORTHO05D008504 5.0e-97 359.4 312 62.8
Glyma.19G080500 Glycine max HOM05D006844 ORTHO05D008504 8.6e-97 358.6 553 73.6
ATR0824G256 Amborella trichopoda HOM05D006844 ORTHO05D008504 6.2e-95 352.4 317 67.5
CANSAT64G2991 Cannabis sativa HOM05D006844 ORTHO05D008504 1.2e-93 348.2 320 69.1
Ah.10g033120 Amaranthus hybridus HOM05D001127 ORTHO05D002230 2.0e-93 347.4 330 67.3
AUR62041622 Chenopodium quinoa HOM05D006844 ORTHO05D008504 2.6e-93 347.1 331 65.9
HPP92_010824 Vanilla planifolia HOM05D006844 ORTHO05D008504 1.3e-92 344.7 329 63.8
BcaB01g05117 Brassica carinata HOM05D006844 ORTHO05D008504 2.7e-90 337.0 319 67.1
C03p07580 Brassica napus HOM05D006844 ORTHO05D008504 2.7e-90 337.0 319 67.1
TPR.G1077 Trifolium pratense HOM05D006844 ORTHO05D008504 6.0e-90 335.9 330 61.5
Os12g0283900 Oryza sativa ssp. japonica HOM05D006844 ORTHO05D008504 1.0e-89 335.1 330 63.6
BolC3t13259H Brassica oleracea HOM05D006844 ORTHO05D008504 1.3e-89 334.7 318 66.7
Lalb_Chr14g0362981 Lupinus albus HOM05D006844 ORTHO05D008504 1.7e-89 334.3 315 65.4
BraA03t09988Z Brassica rapa HOM05D006844 ORTHO05D008504 6.6e-89 332.4 319 66.5
A03p06560 Brassica napus HOM05D006844 ORTHO05D008504 1.9e-88 330.9 319 65.8
Psat3g169440 Pisum sativum HOM05D006844 ORTHO05D008504 1.2e-87 328.2 330 62.1
CDE09G1288 Ceratophyllum demersum HOM05D006844 ORTHO05D008504 2.8e-87 327.0 323 64.7
CDE02G4692 Ceratophyllum demersum HOM05D006844 ORTHO05D008504 9.9e-85 318.5 323 64.4
Oeu023834.1 Olea europaea HOM05D006844 ORTHO05D008504 1.4e-78 298.1 526 46.4
Zm00001eb273000 Zea mays HOM05D006844 ORTHO05D008504 2.3e-73 280.8 200 66.5
Hma1.2p1_0818F.1_g223460 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 1.7e-65 254.6 214 59.8
BcaB01g06331 Brassica carinata HOM05D006844 ORTHO05D008504 9.9e-61 238.8 331 43.5
GSVIVG01003980001 Vitis vinifera HOM05D006844 ORTHO05D008504 4.9e-52 209.9 298 43.3
Pp3c26_10760 Physcomitrium patens HOM05D006844 ORTHO05D008504 3.2e-43 180.6 332 39.2
AagrBONN_evm.TU.Sc2ySwM_117.3382 Anthoceros agrestis HOM05D006844 ORTHO05D008504 2.2e-39 167.9 179 43.6
Mapoly0038s0061 Marchantia polymorpha HOM05D006844 ORTHO05D008504 2.8e-31 141.0 338 40.8
SMO367G0130 Selaginella moellendorffii HOM05D006844 ORTHO05D008504 6.7e-25 119.8 169 37.3
BcaB01g05118 Brassica carinata HOM05D006844 ORTHO05D008504 1.5e-21 108.6 141 44.7
AUR62025550 Chenopodium quinoa HOM05D006844 ORTHO05D008504 2.6e-21 107.8 60 81.7
SalBow1G4926 Salvia bowleyana HOM05D006844 ORTHO05D008504 1.4e-14 85.5 60 61.7
EL10Ac2g03526 Beta vulgaris HOM05D006844 ORTHO05D008504 4.7e-10 70.5 179 48.0
Sc13g0001690 Simmondsia chinensis HOM05D006106 ORTHO05D007662 2.4e-06 58.2 136 25.0


User provided reference genes

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