Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g091620.3 Solanum lycopersicum HOM05D004017 ORTHO05D004612 5.9e-79 297.4 139 100.0
Solyc02g082660.3 Solanum lycopersicum HOM05D004017 ORTHO05D004612 2.0e-18 96.3 71 69.0
Sopen02g027400 Solanum pennellii HOM05D004017 ORTHO05D004612 2.0e-18 96.3 71 69.0
Solyc02g084250.4 Solanum lycopersicum HOM05D027859 ORTHO05D004612 3.2e-16 89.0 71 63.4
CAN.G1238.14 Capsicum annuum HOM05D004017 ORTHO05D004612 9.3e-16 87.4 71 63.4
Nitab4.5_0001467g0040 Nicotiana tabacum HOM05D004017 ORTHO05D004612 9.3e-16 87.4 70 62.9
Nitab4.5_0004608g0010 Nicotiana tabacum HOM05D004017 ORTHO05D004612 3.5e-15 85.5 70 61.4
Sopen02g037100 Solanum pennellii HOM05D004017 ORTHO05D037621 3.9e-14 82.0 60 65.0
Peaxi162Scf00121g02447 Petunia axillaris HOM05D004017 ORTHO05D004612 7.3e-13 77.8 46 76.1
DCAR_016694 Daucus carota HOM05D004017 ORTHO05D004612 4.8e-12 75.1 71 54.9
Hma1.2p1_0300F.1_g117960 Hydrangea macrophylla HOM05D004017 ORTHO05D004612 1.1e-11 73.9 71 54.9
Dinv28320 Davidia involucrata HOM05D004017 ORTHO05D004612 1.4e-11 73.6 71 54.9
ECA238G2486 Erigeron canadensis HOM05D004017 ORTHO05D004612 1.8e-11 73.2 71 52.1
TAR628G0231 Trochodendron aralioides HOM05D004017 ORTHO05D004612 1.8e-11 73.2 72 55.6
GSVIVG01026635001 Vitis vinifera HOM05D004017 ORTHO05D004612 2.4e-11 72.8 71 54.9
Sopen02g027550 Solanum pennellii HOM05D004017 ORTHO05D004612 3.1e-11 72.4 65 55.4
Lj2A500T36 Lonicera japonica HOM05D004017 ORTHO05D004612 9.0e-11 70.9 68 54.4
Actinidia22894 Actinidia chinensis HOM05D004017 ORTHO05D004612 1.2e-10 70.5 71 49.3
vmacro20628 Vaccinium macrocarpon HOM05D004017 ORTHO05D004612 1.2e-10 70.5 71 49.3
arahy.Tifrunner.gnm1.ann1.BKHX3W Arachis hypogaea HOM05D004017 ORTHO05D004612 3.4e-10 68.9 71 49.3
arahy.Tifrunner.gnm1.ann1.LHXL5N Arachis hypogaea HOM05D004017 ORTHO05D004612 3.4e-10 68.9 71 49.3
Lj2g0020546 Lotus japonicus HOM05D004017 ORTHO05D004612 3.4e-10 68.9 71 47.9
Atru.chr3.128 Acer truncatum HOM05D004017 ORTHO05D004612 4.4e-10 68.6 71 47.9
Glyma.01G158400 Glycine max HOM05D004017 ORTHO05D004612 4.4e-10 68.6 71 49.3
HanXRQChr14g0442551 Helianthus annuus HOM05D004017 ORTHO05D004612 4.4e-10 68.6 71 49.3
PGR142G4352 Punica granatum HOM05D004017 ORTHO05D004612 4.4e-10 68.6 109 38.5
Medtr5g024250 Medicago truncatula HOM05D004017 ORTHO05D004612 7.6e-10 67.8 71 47.9
Oeu045735.2 Olea europaea HOM05D004017 ORTHO05D004612 7.6e-10 67.8 55 61.8
Duzib147G1448 Durio zibethinus HOM05D004017 ORTHO05D004612 9.9e-10 67.4 70 47.1
Nn6g31689 Nelumbo nucifera HOM05D004017 ORTHO05D004612 9.9e-10 67.4 71 50.7
QL06p053019 Quercus lobata HOM05D004017 ORTHO05D004612 9.9e-10 67.4 71 49.3
Lalb_Chr16g0380071 Lupinus albus HOM05D004017 ORTHO05D004612 1.3e-09 67.0 71 46.5
Phvul.002G116900 Phaseolus vulgaris HOM05D004017 ORTHO05D004612 1.3e-09 67.0 71 46.5
Sopen02g028020 Solanum pennellii HOM05D004017 ORTHO05D004612 1.3e-09 67.0 44 70.5
Sopen02g031120 Solanum pennellii HOM05D011612 ORTHO05D013629 1.3e-09 67.0 81 43.2
VMungo1215G1547 Vigna mungo HOM05D004017 ORTHO05D004612 1.3e-09 67.0 71 46.5
Aqoxy6G01621 Aquilegia oxysepala HOM05D004017 ORTHO05D004612 1.7e-09 66.6 71 45.1
Ciclev10024702m.g Citrus clementina HOM05D004017 ORTHO05D004612 1.7e-09 66.6 55 56.4
Manes.02G114300 Manihot esculenta HOM05D004017 ORTHO05D004612 1.7e-09 66.6 62 56.5
CiPaw.07G002300 Carya illinoinensis HOM05D004017 ORTHO05D004612 2.2e-09 66.2 73 47.9
Gohir.D03G001700 Gossypium hirsutum HOM05D004017 ORTHO05D004612 2.2e-09 66.2 62 50.0
Gorai.003G002000 Gossypium raimondii HOM05D004017 ORTHO05D004612 2.2e-09 66.2 62 50.0
Psat2g148040 Pisum sativum HOM05D004017 ORTHO05D004612 2.2e-09 66.2 71 46.5
Prupe.7G183500 Prunus persica HOM05D004017 ORTHO05D004612 2.2e-09 66.2 71 49.3
Glyma.11G086300 Glycine max HOM05D004017 ORTHO05D004612 2.9e-09 65.9 71 46.5
Gohir.A02G178100 Gossypium hirsutum HOM05D004017 ORTHO05D004612 2.9e-09 65.9 62 50.0
CANSAT25G1082 Cannabis sativa HOM05D004017 ORTHO05D004612 3.8e-09 65.5 71 49.3
Ca_24985_v3 Cicer arietinum L. HOM05D004017 ORTHO05D004612 3.8e-09 65.5 71 47.9
MD02G1114700 Malus domestica HOM05D004017 ORTHO05D004612 3.8e-09 65.5 71 49.3
RcHm_v2.0_Chr2g0097091 Rosa chinensis HOM05D004017 ORTHO05D004612 3.8e-09 65.5 71 47.9
TPR.G33889 Trifolium pratense HOM05D004017 ORTHO05D004612 4.9e-09 65.1 71 45.1
FvH4_1g10270 Fragaria vesca HOM05D004017 ORTHO05D004612 6.4e-09 64.7 71 46.5
FAN19G1215 Fragaria x ananassa HOM05D004017 ORTHO05D004612 6.4e-09 64.7 71 46.5
FAN26G0543 Fragaria x ananassa HOM05D004017 ORTHO05D004612 6.4e-09 64.7 71 46.5
C07p61210 Brassica napus HOM05D004017 ORTHO05D004612 1.1e-08 63.9 71 49.3
FAN28G2227 Fragaria x ananassa HOM05D004017 ORTHO05D004612 1.1e-08 63.9 71 45.1
Lsat_1_v5_gn_2_73681 Lactuca sativa HOM05D004017 ORTHO05D004612 1.4e-08 63.5 71 45.1
Thecc.01G005000 Theobroma cacao HOM05D004017 ORTHO05D004612 1.4e-08 63.5 62 46.8
Cc07_g11910 Coffea canephora HOM05D004017 ORTHO05D004612 1.9e-08 63.2 71 46.5
Cpa.g.sc6.367 Carica papaya HOM05D004017 ORTHO05D004612 2.4e-08 62.8 71 47.9
Rhsim10G0195200 Rhododendron simsii HOM05D004017 ORTHO05D004612 2.4e-08 62.8 52 53.8
CARHR243850 Cardamine hirsuta HOM05D004017 ORTHO05D004612 3.2e-08 62.4 71 47.9
BolC7t46547H Brassica oleracea HOM05D004017 ORTHO05D004612 4.2e-08 62.0 71 47.9
Sp7g33300 Schrenkiella parvula HOM05D004017 ORTHO05D004612 4.2e-08 62.0 71 47.9
Eucgr.J02538 Eucalyptus grandis HOM05D004017 ORTHO05D004612 5.4e-08 61.6 48 56.2
Thhalv10024245m.g Eutrema salsugineum HOM05D004017 ORTHO05D004612 5.4e-08 61.6 56 53.6
AL7G15650 Arabidopsis lyrata HOM05D004017 ORTHO05D004612 9.3e-08 60.8 71 46.5
THA.LOC104819715 Tarenaya hassleriana HOM05D004017 ORTHO05D004612 9.3e-08 60.8 71 45.1
FAN23G1226 Fragaria x ananassa HOM05D004017 ORTHO05D004612 1.2e-07 60.5 71 45.1
TWI09G1144 Tripterygium wilfordii HOM05D004017 ORTHO05D004612 1.2e-07 60.5 55 54.5
AT4G35520 Arabidopsis thaliana HOM05D004017 ORTHO05D004612 1.6e-07 60.1 71 45.1
A03p63640 Brassica napus HOM05D004017 ORTHO05D004612 1.6e-07 60.1 71 46.5
BraA03t15435Z Brassica rapa HOM05D004017 ORTHO05D004612 1.6e-07 60.1 71 46.5
PSO541G0703 Papaver somniferum HOM05D004017 ORTHO05D004612 2.1e-07 59.7 56 53.6
Sabra05G0084300 Salix brachista HOM05D004017 ORTHO05D004612 2.7e-07 59.3 62 43.5
Sed0025898 Sechium edule HOM05D004017 ORTHO05D004612 2.7e-07 59.3 62 46.8
Solyc02g090045.1 Solanum lycopersicum HOM05D004017 ORTHO05D004612 3.5e-07 58.9 65 53.8
Carub.0007s0481 Capsella rubella HOM05D004017 ORTHO05D004612 4.6e-07 58.5 47 57.4
Aa31LG6G12480 Aethionema arabicum HOM05D004017 ORTHO05D004612 6.0e-07 58.2 52 53.8
ATR0807G072 Amborella trichopoda HOM05D004017 ORTHO05D004612 7.9e-07 57.8 71 43.7
Potri.005G101900 Populus trichocarpa HOM05D004017 ORTHO05D004612 1.3e-06 57.0 62 41.9
COL.COLO4_22554 Corchorus olitorius HOM05D004017 ORTHO05D004612 1.7e-06 56.6 70 40.0
Sc03g0003980 Simmondsia chinensis HOM05D004017 ORTHO05D004612 2.3e-06 56.2 54 51.9
PGSC0003DMG400003631 Solanum tuberosum HOM05D004017 ORTHO05D004612 3.0e-06 55.8 36 69.4
Migut.L00849 Erythranthe guttata HOM05D004017 ORTHO05D004612 8.7e-06 54.3 55 50.9
Zm00001eb215200 Zea mays HOM05D004017 ORTHO05D004612 8.7e-06 54.3 58 44.8


User provided reference genes

Program Settings