Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g091340.4 Solanum lycopersicum HOM05D005540 ORTHO05D006932 1.5e-192 676.0 340 100.0
Sopen02g035960 Solanum pennellii HOM05D005540 ORTHO05D006932 5.7e-192 674.1 340 99.7
Nitab4.5_0004399g0070 Nicotiana tabacum HOM05D005540 ORTHO05D006932 5.0e-172 607.8 362 85.4
CAN.G625.83 Capsicum annuum HOM05D005540 ORTHO05D006932 2.6e-168 595.5 330 91.5
CSS0010845 Camellia sinensis var. sinensis HOM05D005540 ORTHO05D006932 1.7e-159 566.2 340 84.1
Dinv14871 Davidia involucrata HOM05D005540 ORTHO05D006932 4.8e-159 564.7 340 84.1
Nitab4.5_0002248g0040 Nicotiana tabacum HOM05D005540 ORTHO05D006932 2.9e-156 555.4 354 82.2
MSTRG.23613 Avicennia marina HOM05D005540 ORTHO05D006932 1.2e-154 550.1 333 82.0
Cfa007847 Carpinus fangiana HOM05D005540 ORTHO05D006932 1.4e-153 546.6 337 82.2
TAR629G0151 Trochodendron aralioides HOM05D005540 ORTHO05D006932 2.6e-152 542.3 335 81.2
Atru.chr4.1672 Acer truncatum HOM05D005540 ORTHO05D006932 3.4e-152 542.0 320 84.7
CiPaw.03G067900 Carya illinoinensis HOM05D005540 ORTHO05D006932 9.8e-152 540.4 320 84.4
GSVIVG01030869001 Vitis vinifera HOM05D005540 ORTHO05D006932 9.8e-152 540.4 338 80.8
TWI77G0639 Tripterygium wilfordii HOM05D005540 ORTHO05D006932 1.7e-151 539.7 320 84.4
CANSAT78G2033 Cannabis sativa HOM05D005540 ORTHO05D006932 2.8e-151 538.9 307 86.6
Migut.H00866 Erythranthe guttata HOM05D005540 ORTHO05D006932 8.3e-151 537.3 310 84.5
Potri.017G129000 Populus trichocarpa HOM05D005540 ORTHO05D006932 1.1e-150 537.0 307 85.7
RcHm_v2.0_Chr2g0122561 Rosa chinensis HOM05D005540 ORTHO05D006932 4.1e-150 535.0 317 84.2
BcaB06g27151 Brassica carinata HOM05D005540 ORTHO05D006932 5.4e-150 534.6 322 82.9
Manes.07G054300 Manihot esculenta HOM05D005540 ORTHO05D006932 9.1e-150 533.9 307 85.0
TPR.G3482 Trifolium pratense HOM05D005540 ORTHO05D006932 1.2e-149 533.5 322 81.7
vmacro18057 Vaccinium macrocarpon HOM05D005540 ORTHO05D006932 1.2e-149 533.5 317 83.0
Aqoxy3G00138 Aquilegia oxysepala HOM05D005540 ORTHO05D006932 2.0e-149 532.7 307 86.0
BraA04t16769Z Brassica rapa HOM05D005540 ORTHO05D006932 2.0e-149 532.7 321 82.9
C04p44790 Brassica napus HOM05D005540 ORTHO05D006932 2.7e-149 532.3 321 82.9
BcaC02g09619 Brassica carinata HOM05D005540 ORTHO05D006932 3.5e-149 531.9 310 84.8
Eucgr.F02818 Eucalyptus grandis HOM05D005540 ORTHO05D006932 4.5e-149 531.6 309 85.1
THA.LOC104822414 Tarenaya hassleriana HOM05D005540 ORTHO05D006932 5.9e-149 531.2 326 81.6
BolC4t26053H Brassica oleracea HOM05D005540 ORTHO05D006932 7.7e-149 530.8 322 82.9
Sed0009967 Sechium edule HOM05D005540 ORTHO05D006932 7.7e-149 530.8 306 85.3
ECA232G3523 Erigeron canadensis HOM05D005540 ORTHO05D006932 1.7e-148 529.6 310 84.5
Actinidia39198 Actinidia chinensis HOM05D005540 ORTHO05D006932 2.9e-148 528.9 324 82.7
A04p11070 Brassica napus HOM05D005540 ORTHO05D006932 5.0e-148 528.1 322 82.6
Ciclev10012086m.g Citrus clementina HOM05D005540 ORTHO05D006932 5.0e-148 528.1 307 85.3
COL.COLO4_15705 Corchorus olitorius HOM05D005540 ORTHO05D006932 5.0e-148 528.1 310 83.9
Thecc.04G122100 Theobroma cacao HOM05D005540 ORTHO05D006932 8.6e-148 527.3 326 80.7
Lalb_Chr18g0053271 Lupinus albus HOM05D005540 ORTHO05D006932 1.1e-147 526.9 320 82.5
CsaV3_3G021680 Cucumis sativus L. HOM05D005540 ORTHO05D006932 1.5e-147 526.6 307 84.4
Sp7g04170 Schrenkiella parvula HOM05D005540 ORTHO05D006932 1.2e-146 523.5 310 83.2
Cc07_g08210 Coffea canephora HOM05D005540 ORTHO05D006932 1.6e-146 523.1 335 78.5
VMungo1383G3344 Vigna mungo HOM05D005540 ORTHO05D006932 2.8e-146 522.3 320 81.9
Thhalv10027854m.g Eutrema salsugineum HOM05D005540 ORTHO05D006932 8.0e-146 520.8 310 82.9
Duzib138G0816 Durio zibethinus HOM05D005540 ORTHO05D006932 1.0e-145 520.4 314 81.5
Gohir.D11G168100 Gossypium hirsutum HOM05D005540 ORTHO05D006932 1.0e-145 520.4 310 83.2
Gorai.007G179400 Gossypium raimondii HOM05D005540 ORTHO05D006932 1.0e-145 520.4 310 83.2
Medtr5g079730 Medicago truncatula HOM05D005540 ORTHO05D006932 1.0e-145 520.4 307 82.7
CARHR214890 Cardamine hirsuta HOM05D005540 ORTHO05D006932 1.4e-145 520.0 321 80.4
PGR004G0611 Punica granatum HOM05D005540 ORTHO05D006932 3.0e-145 518.8 335 79.4
PSO017G2970 Papaver somniferum HOM05D005540 ORTHO05D006932 4.0e-145 518.5 325 79.4
Psat2g040920 Pisum sativum HOM05D005540 ORTHO05D006932 5.2e-145 518.1 307 82.7
Carub.0007s3304 Capsella rubella HOM05D005540 ORTHO05D006932 6.8e-145 517.7 321 80.4
Ca_05867_v3 Cicer arietinum L. HOM05D005540 ORTHO05D006932 6.8e-145 517.7 307 82.4
Lj4A178T43 Lonicera japonica HOM05D005540 ORTHO05D006932 8.9e-145 517.3 360 76.1
Phvul.001G232200 Phaseolus vulgaris HOM05D005540 ORTHO05D006932 1.2e-144 516.9 320 81.6
AT5G37850 Arabidopsis thaliana HOM05D005540 ORTHO05D006932 1.5e-144 516.5 310 82.6
LjContig00141g0003223 Lotus japonicus HOM05D005540 ORTHO05D006932 1.5e-144 516.5 307 82.4
Glyma.11G218700 Glycine max HOM05D005540 ORTHO05D006932 2.6e-144 515.8 329 78.4
Gohir.A11G161800 Gossypium hirsutum HOM05D005540 ORTHO05D006932 2.6e-144 515.8 310 82.9
ClCG05G010900 Citrullus lanatus HOM05D005540 ORTHO05D006932 4.4e-144 515.0 317 81.4
Glyma.18G038600 Glycine max HOM05D005540 ORTHO05D006932 9.8e-144 513.8 322 80.4
AL7G46750 Arabidopsis lyrata HOM05D005540 ORTHO05D006932 6.3e-143 511.1 310 81.6
FAN28G0493 Fragaria x ananassa HOM05D005540 ORTHO05D006932 5.4e-142 508.1 398 67.8
Aa31LG9G17310 Aethionema arabicum HOM05D005540 ORTHO05D006932 2.0e-141 506.1 321 78.8
Sed0014193 Sechium edule HOM05D005540 ORTHO05D006932 1.0e-140 503.8 308 82.1
Peaxi162Scf00803g00528 Petunia axillaris HOM05D005540 ORTHO05D006932 1.5e-139 500.0 314 82.5
Zm00001eb135500 Zea mays HOM05D005540 ORTHO05D006932 1.9e-139 499.6 308 79.9
ATR0686G023 Amborella trichopoda HOM05D005540 ORTHO05D006932 5.6e-139 498.0 297 82.5
Prupe.3G158100 Prunus persica HOM05D005540 ORTHO05D006932 2.3e-137 492.7 318 78.9
Os12g0600400 Oryza sativa ssp. japonica HOM05D005540 ORTHO05D006932 3.1e-137 492.3 310 77.4
Sabra17G0107500 Salix brachista HOM05D005540 ORTHO05D006932 3.2e-134 482.3 329 75.7
arahy.Tifrunner.gnm1.ann1.A8AWVV Arachis hypogaea HOM05D005540 ORTHO05D006932 2.0e-133 479.6 307 78.8
HPP92_024102 Vanilla planifolia HOM05D005540 ORTHO05D006932 2.0e-133 479.6 353 69.1
arahy.Tifrunner.gnm1.ann1.IJ36EI Arachis hypogaea HOM05D005540 ORTHO05D006932 1.0e-132 477.2 307 78.5
unitig_0.g2608 Utricularia gibba HOM05D005540 ORTHO05D006932 3.9e-132 475.3 309 76.1
Dinv19006 Davidia involucrata HOM05D005540 ORTHO05D006932 8.6e-132 474.2 296 81.8
EL10Ac2g04488 Beta vulgaris HOM05D005540 ORTHO05D006932 2.1e-130 469.5 333 73.3
Lsat_1_v5_gn_4_154720 Lactuca sativa HOM05D005540 ORTHO05D006932 3.6e-130 468.8 342 71.9
Duzib133G1255 Durio zibethinus HOM05D005540 ORTHO05D006932 4.0e-129 465.3 310 76.5
FAN23G2620 Fragaria x ananassa HOM05D005540 ORTHO05D006932 9.8e-128 460.7 319 75.2
SEGI_01535 Sequoiadendron giganteum HOM05D005540 ORTHO05D006932 6.4e-127 458.0 333 69.7
Rhsim08G0085100 Rhododendron simsii HOM05D005540 ORTHO05D006932 1.1e-126 457.2 497 54.1
PSO478G5258 Papaver somniferum HOM05D005540 ORTHO05D006932 7.1e-126 454.5 259 85.3
CDE04G3097 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 1.2e-125 453.8 307 74.3
MD12G1075700 Malus domestica HOM05D005540 ORTHO05D006932 2.1e-125 453.0 322 72.4
QL11p004195 Quercus lobata HOM05D005540 ORTHO05D006932 8.1e-122 441.0 419 58.9
Pp3c7_20600 Physcomitrium patens HOM05D005540 ORTHO05D006932 4.0e-121 438.7 303 72.3
arahy.Tifrunner.gnm1.ann1.32A9M8 Arachis hypogaea HOM05D005540 ORTHO05D006932 4.4e-120 435.3 287 77.0
Sed0021451 Sechium edule HOM05D005540 ORTHO05D006932 1.1e-118 430.6 305 72.1
Atru.BG.179.p Acer truncatum HOM05D005540 ORTHO05D006932 7.1e-118 427.9 309 73.8
Pp3c11_8570 Physcomitrium patens HOM05D005540 ORTHO05D006932 1.7e-116 423.3 295 70.2
SGA_v2.0_scaffold49G18144 Striga asiatica HOM05D005540 ORTHO05D006932 6.6e-116 421.4 252 81.3
FvH4_1g24900 Fragaria vesca HOM05D005540 ORTHO05D006932 8.6e-116 421.0 230 90.0
Sc14g0004860 Simmondsia chinensis HOM05D005540 ORTHO05D006932 1.1e-115 420.6 249 83.1
Mapoly0043s0025 Marchantia polymorpha HOM05D005540 ORTHO05D006932 8.1e-114 414.5 322 64.6
Lsat_1_v5_gn_0_4201 Lactuca sativa HOM05D005540 ORTHO05D006932 4.0e-113 412.1 286 75.5
CDE06G0494 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 8.9e-113 411.0 265 77.0
Ah.10g037980 Amaranthus hybridus HOM05D005540 ORTHO05D006932 4.2e-110 402.1 310 67.7
Hma1.2p1_0283F.1_g113550 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 4.2e-110 402.1 330 66.7
SMO117G0213 Selaginella moellendorffii HOM05D005540 ORTHO05D006932 6.2e-106 388.3 290 65.2
SalBow3G0445 Salvia bowleyana HOM05D005540 ORTHO05D006932 1.1e-105 387.5 255 76.1
AagrBONN_evm.TU.Sc2ySwM_344.3276 Anthoceros agrestis HOM05D005540 ORTHO05D006932 6.9e-105 384.8 260 71.5
DCAR_025877 Daucus carota HOM05D005540 ORTHO05D006932 3.8e-103 379.0 219 85.4
MBI16_g05922_MAGBIO Magnolia biondii HOM05D005540 ORTHO05D006932 1.5e-99 367.1 244 75.8
Nn4g24119 Nelumbo nucifera HOM05D005540 ORTHO05D006932 1.5e-96 357.1 340 58.8
Sed0017329 Sechium edule HOM05D005540 ORTHO05D006932 3.8e-95 352.4 227 75.8
HPP92_024131 Vanilla planifolia HOM05D005540 ORTHO05D006932 3.2e-94 349.4 211 81.0
MCO05G093 Micromonas commoda HOM05D005540 ORTHO05D006932 3.3e-91 339.3 305 57.0
AUR62023244 Chenopodium quinoa HOM05D005540 ORTHO05D006932 1.3e-87 327.4 310 58.4
SGA_v2.0_scaffold6G03270 Striga asiatica HOM05D005540 ORTHO05D006932 1.1e-75 287.7 177 79.1
Hund16203 Selenicereus undatus HOM05D005540 ORTHO05D006932 3.7e-74 282.7 184 76.6
Cre03.g173800 Chlamydomonas reinhardtii HOM05D005540 ORTHO05D006932 1.0e-71 274.6 311 49.2
Haze_14219 Corylus avellana HOM05D005540 ORTHO05D006932 8.8e-68 261.5 223 65.5
Migut.H00263 Erythranthe guttata HOM05D005540 ORTHO05D006932 2.0e-67 260.4 158 80.4
CBR_g12736 Chara braunii HOM05D005540 ORTHO05D006932 1.1e-65 254.6 157 79.6
FAN26G0473 Fragaria x ananassa HOM05D005540 ORTHO05D006932 3.1e-65 253.1 488 36.7
Oeu030810.1 Olea europaea HOM05D005540 ORTHO05D006932 3.8e-63 246.1 157 78.3
Cpa.g.sc116.24 Carica papaya HOM05D005540 ORTHO05D006932 1.1e-57 228.0 143 79.7
Cpa.g.sc116.26 Carica papaya HOM05D005540 ORTHO05D006932 2.6e-56 223.4 120 90.0
Nn3g18203 Nelumbo nucifera HOM05D005540 ORTHO05D006932 2.6e-56 223.4 118 89.8
SHI09520 Sapria himalayana HOM05D005540 ORTHO05D006932 1.5e-46 191.0 113 82.3
Hund16202 Selenicereus undatus HOM05D005540 ORTHO05D006932 4.2e-46 189.5 228 49.6
PRCOL_00006483 Prasinoderma coloniale HOM05D005540 ORTHO05D006932 4.4e-43 179.5 270 37.0
Nn3g18202 Nelumbo nucifera HOM05D005540 ORTHO05D006932 1.9e-38 164.1 99 79.8
Haze_26639 Corylus avellana HOM05D005540 ORTHO05D006932 6.6e-31 139.0 288 31.6
Atru.chr4.2426 Acer truncatum HOM05D005540 ORTHO05D006932 6.1e-29 132.5 66 93.9
Cfa022314 Carpinus fangiana HOM05D005540 ORTHO05D006932 2.0e-27 127.5 325 28.9
SalBow3G4194 Salvia bowleyana HOM05D005540 ORTHO05D006932 6.4e-26 122.5 85 76.5
FAN26G3341 Fragaria x ananassa HOM05D005540 ORTHO05D006932 1.2e-24 118.2 61 91.8
AUR62023196 Chenopodium quinoa HOM05D005540 ORTHO05D006932 3.5e-24 116.7 59 91.5
MELO3C031731.2 Cucumis melo HOM05D005540 ORTHO05D006932 1.7e-23 114.4 63 87.3
MELO3C020384.2 Cucumis melo HOM05D005540 ORTHO05D006932 7.3e-22 109.0 70 74.3
Hma1.2p1_0179F.1_g079120 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 8.0e-21 105.5 55 89.1
SHI09525 Sapria himalayana HOM05D005540 ORTHO05D006932 8.3e-18 95.5 72 69.4
arahy.Tifrunner.gnm1.ann1.XYVL4V Arachis hypogaea HOM05D005540 ORTHO05D023714 5.8e-11 72.8 43 81.4
Hma1.2p1_0179F.1_g079130 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 2.2e-10 70.9 33 93.9
SEGI_04261 Sequoiadendron giganteum HOM05D005540 ORTHO05D006932 3.7e-10 70.1 43 76.7
SHI09501 Sapria himalayana HOM05D005540 ORTHO05D006932 1.0e-07 62.0 55 58.2
PGR042G3208 Punica granatum HOM05D005536 ORTHO05D006999 1.9e-06 57.8 110 32.7
unitig_748.g8492 Utricularia gibba HOM05D005540 ORTHO05D425961 4.3e-06 56.6 105 39.0
Duzib132G1177 Durio zibethinus HOM05D005536 ORTHO05D006999 5.6e-06 56.2 102 34.3


User provided reference genes

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