Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g088270.3 Solanum lycopersicum HOM05D004214 ORTHO05D004963 5.0e-145 517.7 251 100.0
Sopen02g032950 Solanum pennellii HOM05D004214 ORTHO05D004963 2.9e-137 491.9 251 94.4
PGSC0003DMG401001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 6.6e-121 437.6 254 85.8
PGSC0003DMG402001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 9.8e-117 423.7 253 82.6
CAN.G206.176 Capsicum annuum HOM05D004214 ORTHO05D004963 2.3e-97 359.4 261 72.4
Nitab4.5_0000568g0170 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.7e-92 343.2 255 71.4
Peaxi162Scf00166g01050 Petunia axillaris HOM05D004214 ORTHO05D004963 1.3e-71 273.9 204 66.7
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 1.1e-59 234.2 188 58.5
Nitab4.5_0001591g0160 Nicotiana tabacum HOM05D004214 ORTHO05D004963 2.3e-57 226.5 249 53.0
Oeu010226.1 Olea europaea HOM05D004214 ORTHO05D004963 3.0e-57 226.1 198 54.0
Oeu010227.1 Olea europaea HOM05D004214 ORTHO05D004963 3.0e-57 226.1 198 54.0
Eucgr.I02016 Eucalyptus grandis HOM05D004214 ORTHO05D004963 5.1e-57 225.3 188 56.9
Actinidia06102 Actinidia chinensis HOM05D004214 ORTHO05D004963 6.7e-57 224.9 185 56.2
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 2.5e-56 223.0 203 51.7
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 2.5e-56 223.0 203 52.7
GSVIVG01011460001 Vitis vinifera HOM05D004214 ORTHO05D004963 9.7e-56 221.1 211 52.1
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 1.1e-54 217.6 198 55.1
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 3.1e-54 216.1 244 45.9
Migut.H00677 Erythranthe guttata HOM05D004214 ORTHO05D004963 4.1e-54 215.7 208 51.0
CSS0015906 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 6.9e-54 214.9 192 52.1
CSS0019671 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 6.9e-54 214.9 192 52.1
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 2.0e-53 213.4 205 51.2
TAR629G3302 Trochodendron aralioides HOM05D004214 ORTHO05D004963 2.6e-53 213.0 185 55.1
CSS0036969 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 3.4e-53 212.6 185 54.1
Solyc02g067120.4 Solanum lycopersicum HOM05D004214 ORTHO05D004963 3.4e-53 212.6 185 55.1
Sopen02g016310 Solanum pennellii HOM05D004214 ORTHO05D004963 3.4e-53 212.6 185 55.1
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 3.4e-53 212.6 185 55.1
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 4.5e-53 212.2 201 52.7
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 7.7e-53 211.5 196 53.6
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 1.0e-52 211.1 203 48.8
SalBow1G5883 Salvia bowleyana HOM05D004214 ORTHO05D004963 1.3e-52 210.7 195 54.9
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 5.0e-52 208.8 192 51.0
TWI34G0797 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 5.0e-52 208.8 203 50.7
TWI34G1333 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 5.0e-52 208.8 203 50.7
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 1.1e-51 207.6 196 51.5
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 1.4e-51 207.2 192 51.6
Ciclev10012515m.g Citrus clementina HOM05D004214 ORTHO05D004963 1.9e-51 206.8 202 51.5
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 2.5e-51 206.5 198 52.5
AL7G50790 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 3.2e-51 206.1 200 51.5
BraA04t16892Z Brassica rapa HOM05D004214 ORTHO05D004963 4.2e-51 205.7 200 52.5
HanXRQChr15g0487741 Helianthus annuus HOM05D004214 ORTHO05D004963 4.2e-51 205.7 196 51.5
C04p45960 Brassica napus HOM05D004214 ORTHO05D004963 7.2e-51 204.9 200 52.5
BolC4t26179H Brassica oleracea HOM05D004214 ORTHO05D004963 7.2e-51 204.9 200 52.5
A04p12280 Brassica napus HOM05D004214 ORTHO05D004963 9.4e-51 204.5 200 52.5
BcaB06g27320 Brassica carinata HOM05D004214 ORTHO05D004963 1.2e-50 204.1 200 52.0
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 1.2e-50 204.1 192 50.5
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 1.2e-50 204.1 192 50.5
Nitab4.5_0010283g0010 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.2e-50 204.1 192 52.6
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 1.6e-50 203.8 201 51.7
THA.LOC104805483 Tarenaya hassleriana HOM05D004214 ORTHO05D004963 1.6e-50 203.8 197 50.8
Thecc.04G087300 Theobroma cacao HOM05D004214 ORTHO05D004963 2.7e-50 203.0 223 44.8
CARHR262810 Cardamine hirsuta HOM05D004214 ORTHO05D004963 4.7e-50 202.2 199 51.3
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 6.1e-50 201.8 200 50.5
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 7.9e-50 201.4 192 50.0
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 1.0e-49 201.1 192 50.0
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 1.0e-49 201.1 192 50.0
Rhsim10G0035800 Rhododendron simsii HOM05D004214 ORTHO05D004963 1.0e-49 201.1 192 52.6
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 1.0e-49 201.1 191 52.4
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 1.4e-49 200.7 192 50.0
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 2.3e-49 199.9 192 50.5
Gorai.001G240700 Gossypium raimondii HOM05D004214 ORTHO05D004963 3.0e-49 199.5 232 44.0
Carub.0007s3643 Capsella rubella HOM05D004214 ORTHO05D004963 6.7e-49 198.4 191 51.8
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 1.5e-48 197.2 198 48.5
Cc07_g03630 Coffea canephora HOM05D004214 ORTHO05D004963 1.5e-48 197.2 196 47.4
Lj3A346G23 Lonicera japonica HOM05D004214 ORTHO05D004963 2.6e-48 196.4 185 51.4
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 3.3e-48 196.1 192 49.0
DCAR_011079 Daucus carota HOM05D004214 ORTHO05D004963 5.7e-48 195.3 197 48.7
AT5G39520 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 7.4e-48 194.9 202 48.5
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 2.8e-47 193.0 182 52.2
Duzib147G0992 Durio zibethinus HOM05D004214 ORTHO05D004963 2.8e-47 193.0 200 46.5
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 3.7e-47 192.6 182 52.2
CAN.G979.5 Capsicum annuum HOM05D004214 ORTHO05D004963 4.8e-47 192.2 159 56.6
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 8.2e-47 191.4 186 48.4
AUR62018111 Chenopodium quinoa HOM05D004214 ORTHO05D004963 3.1e-46 189.5 182 50.5
QL02p084825 Quercus lobata HOM05D004214 ORTHO05D004963 3.1e-46 189.5 206 46.1
COL.COLO4_12225 Corchorus olitorius HOM05D004214 ORTHO05D004963 4.1e-46 189.1 181 49.2
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 1.2e-45 187.6 204 46.6
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 2.0e-45 186.8 176 49.4
Hund15587 Selenicereus undatus HOM05D004214 ORTHO05D004963 4.2e-43 179.1 198 47.0
AT5G39530 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 9.4e-43 177.9 174 49.4
CDE02G0918 Ceratophyllum demersum HOM05D004214 ORTHO05D004963 8.0e-42 174.9 188 45.2
Ca_04853_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 1.5e-40 170.6 210 39.5
Medtr6g012830 Medicago truncatula HOM05D004214 ORTHO05D004963 2.0e-40 170.2 183 42.1
PSO478G0939 Papaver somniferum HOM05D004214 ORTHO05D004963 2.6e-40 169.9 185 45.9
PSO017G4463 Papaver somniferum HOM05D004214 ORTHO05D004963 3.3e-40 169.5 185 45.4
ATR0564G445 Amborella trichopoda HOM05D004214 ORTHO05D004963 7.5e-40 168.3 195 43.1
AUR62034445 Chenopodium quinoa HOM05D004214 ORTHO05D004963 9.7e-40 167.9 190 46.3
Peaxi162Scf00629g00121 Petunia axillaris HOM05D004214 ORTHO05D004963 9.7e-40 167.9 192 46.4
TPR.G14395 Trifolium pratense HOM05D004214 ORTHO05D004963 1.7e-39 167.2 183 43.2
Nn4g23269 Nelumbo nucifera HOM05D004214 ORTHO05D004963 8.2e-39 164.9 137 56.2
arahy.Tifrunner.gnm1.ann1.55PBKN Arachis hypogaea HOM05D004214 ORTHO05D004963 1.4e-38 164.1 182 40.7
Lj2g0002943 Lotus japonicus HOM05D004214 ORTHO05D004963 1.4e-38 164.1 186 38.7
QL02p084872 Quercus lobata HOM05D004214 ORTHO05D004963 1.4e-38 164.1 206 40.8
Lj2g0016815 Lotus japonicus HOM05D004214 ORTHO05D004963 1.8e-38 163.7 212 35.4
arahy.Tifrunner.gnm1.ann1.7SZ544 Arachis hypogaea HOM05D004214 ORTHO05D004963 3.1e-38 162.9 182 40.7
Psat1g070480 Pisum sativum HOM05D004214 ORTHO05D004963 7.0e-38 161.8 194 40.2
PGR004G0346 Punica granatum HOM05D004214 ORTHO05D004963 9.1e-38 161.4 137 56.9
Gohir.D07G212700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 1.2e-37 161.0 155 49.7
Glyma.13G060852 Glycine max HOM05D004214 ORTHO05D004963 4.5e-37 159.1 183 39.9
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 5.9e-37 158.7 182 47.3
SGA_v2.0_scaffold413G51175 Striga asiatica HOM05D004214 ORTHO05D004963 5.9e-37 158.7 180 46.1
Lj3A369T15 Lonicera japonica HOM05D004214 ORTHO05D004963 7.7e-37 158.3 145 51.0
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 1.7e-36 157.1 191 40.3
Lj8A426T27 Lonicera japonica HOM05D004214 ORTHO05D004963 6.5e-36 155.2 146 50.0
VMungo0464G0566 Vigna mungo HOM05D004214 ORTHO05D004963 1.5e-35 154.1 199 40.2
Lj8A428G27 Lonicera japonica HOM05D004214 ORTHO05D004963 4.2e-35 152.5 144 50.0
MD09G1055000 Malus domestica HOM05D004214 ORTHO05D004963 4.2e-35 152.5 182 41.8
Zm00001eb402430 Zea mays HOM05D004214 ORTHO05D004963 4.2e-35 152.5 183 39.3
Lj3A367T10 Lonicera japonica HOM05D004214 ORTHO05D004963 9.4e-35 151.4 144 50.0
Nitab4.5_0000212g0090 Nicotiana tabacum HOM05D004214 ORTHO05D004963 3.6e-34 149.4 144 50.7
Phvul.004G031400 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 3.6e-34 149.4 183 38.3
TPR.G26214 Trifolium pratense HOM05D004214 ORTHO05D004963 3.6e-34 149.4 210 35.7
FAN05G5298 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.4e-33 147.5 200 37.5
Glyma.19G025600 Glycine max HOM05D004214 ORTHO05D004963 1.8e-33 147.1 183 38.3
ClCG09G017980 Citrullus lanatus HOM05D004214 ORTHO05D004963 6.8e-33 145.2 197 37.6
FvH4_6g48001 Fragaria vesca HOM05D004214 ORTHO05D004963 6.8e-33 145.2 200 37.5
Os03g0168300 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 2.0e-32 143.7 181 38.1
Lj4P113T24 Lonicera japonica HOM05D004214 ORTHO05D004963 7.5e-32 141.7 138 49.3
Lalb_Chr06g0175181 Lupinus albus HOM05D004214 ORTHO05D004963 9.8e-32 141.4 206 33.0
FAN09G1794 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.3e-31 141.0 203 37.4
Prupe.3G263500 Prunus persica HOM05D004214 ORTHO05D004963 1.3e-31 141.0 182 42.3
MELO3C033594.2 Cucumis melo HOM05D004214 ORTHO05D004963 1.7e-31 140.6 185 41.6
CsaV3_5G038250 Cucumis sativus L. HOM05D004214 ORTHO05D004963 2.2e-31 140.2 197 38.6
FAN14G3700 Fragaria x ananassa HOM05D004214 ORTHO05D004963 2.8e-31 139.8 198 36.9
RcHm_v2.0_Chr2g0167291 Rosa chinensis HOM05D004214 ORTHO05D004963 4.8e-31 139.0 197 36.5
QL02p084854 Quercus lobata HOM05D004214 ORTHO05D004963 6.3e-31 138.7 208 37.0
FvH4_6g48000 Fragaria vesca HOM05D004214 ORTHO05D004963 1.1e-30 137.9 213 36.2
Lj3A352G14 Lonicera japonica HOM05D004214 ORTHO05D004963 1.1e-30 137.9 138 47.1
RcHm_v2.0_Chr2g0167251 Rosa chinensis HOM05D004214 ORTHO05D004963 1.1e-30 137.9 187 35.8
Lj2g0019349 Lotus japonicus HOM05D004214 ORTHO05D004963 1.8e-30 137.1 183 35.5
FAN14G4990 Fragaria x ananassa HOM05D004214 ORTHO05D004963 3.1e-30 136.3 230 34.8
PGR083G1063 Punica granatum HOM05D004214 ORTHO05D004963 3.1e-30 136.3 182 41.8
Psat1g071840 Pisum sativum HOM05D004214 ORTHO05D004963 7.0e-30 135.2 210 34.3
Lj2g0001860 Lotus japonicus HOM05D004214 ORTHO05D004963 9.1e-30 134.8 146 38.4
Phvul.004G029700 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 1.0e-28 131.3 186 35.5
TPR.G8805 Trifolium pratense HOM05D004214 ORTHO05D004963 1.9e-27 127.1 177 34.5
RcHm_v2.0_Chr2g0167241 Rosa chinensis HOM05D004214 ORTHO05D004963 2.1e-26 123.6 181 38.1
Mapoly0033s0115 Marchantia polymorpha HOM05D004214 ORTHO05D004963 8.0e-26 121.7 193 34.7
Os07g0633000 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 1.5e-24 117.5 175 40.6
Gohir.A07G206700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 3.4e-24 116.3 138 40.6
arahy.Tifrunner.gnm1.ann1.SU00NT Arachis hypogaea HOM05D004214 ORTHO05D004963 4.4e-24 115.9 181 34.3
Ca_04848_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 5.7e-24 115.5 181 34.8
FAN02G2928 Fragaria x ananassa HOM05D004214 ORTHO05D004963 7.5e-24 115.2 200 32.5
Zm00001eb328430 Zea mays HOM05D004214 ORTHO05D004963 3.7e-23 112.8 161 38.5
C04p45950 Brassica napus HOM05D004214 ORTHO05D004963 3.5e-21 106.3 182 35.7
BolC4t26178H Brassica oleracea HOM05D004214 ORTHO05D004963 1.9e-19 100.5 71 63.4
ClCG10G015310 Citrullus lanatus HOM05D004214 ORTHO05D004963 2.5e-19 100.1 212 29.2
CBR_g51334 Chara braunii HOM05D004214 ORTHO05D004963 9.5e-19 98.2 189 33.3
Glyma.13G061800 Glycine max HOM05D004214 ORTHO05D004963 8.0e-18 95.1 100 43.0
Gohir.D11G074550 Gossypium hirsutum HOM05D004214 ORTHO05D004963 4.0e-17 92.8 116 38.8
Gorai.007G080000 Gossypium raimondii HOM05D004214 ORTHO05D004963 5.2e-17 92.4 116 38.8
MD09G1055400 Malus domestica HOM05D004214 ORTHO05D004963 5.2e-17 92.4 110 39.1
Lj3A350G16 Lonicera japonica HOM05D004214 ORTHO05D004963 7.8e-13 78.6 77 51.9
PRCOL_00004285 Prasinoderma coloniale HOM05D004214 ORTHO05D004963 6.2e-10 68.9 175 24.6
CsaV3_3G041190 Cucumis sativus L. HOM05D004214 ORTHO05D004963 6.8e-09 65.5 181 26.0
C06p18570 Brassica napus HOM05D004214 ORTHO05D004963 1.3e-07 61.2 81 38.3
Sabra17G0077200 Salix brachista HOM05D004214 ORTHO05D004963 6.4e-07 58.9 56 50.0
MELO3C009848.2 Cucumis melo HOM05D004214 ORTHO05D004963 2.4e-06 57.0 137 27.7
Lj3A364T22 Lonicera japonica HOM05D004214 ORTHO05D004963 2.4e-06 57.0 71 40.8
BraA07t29702Z Brassica rapa HOM05D004214 ORTHO05D004963 9.2e-06 55.1 73 41.1


User provided reference genes

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