Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g087230.3 Solanum lycopersicum HOM05D005035 ORTHO05D006141 1.1e-83 313.2 150 100.0
Sopen02g031970 Solanum pennellii HOM05D005035 ORTHO05D006141 1.1e-83 313.2 150 100.0
CAN.G206.60 Capsicum annuum HOM05D005035 ORTHO05D006141 3.9e-76 288.1 150 92.7
Nitab4.5_0001952g0210 Nicotiana tabacum HOM05D005035 ORTHO05D006141 6.6e-76 287.3 150 94.0
Nitab4.5_0007185g0060 Nicotiana tabacum HOM05D005035 ORTHO05D006141 4.3e-75 284.6 150 93.3
Peaxi162Scf00129g00821 Petunia axillaris HOM05D005035 ORTHO05D006141 5.8e-72 274.2 150 90.7
Migut.H00159 Erythranthe guttata HOM05D005035 ORTHO05D006141 3.9e-68 261.5 150 84.0
vmacro05790 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 6.6e-68 260.8 149 83.2
Migut.K01356 Erythranthe guttata HOM05D005035 ORTHO05D006141 3.3e-67 258.5 151 82.8
MSTRG.3309 Avicennia marina HOM05D005035 ORTHO05D006141 2.1e-66 255.8 150 81.3
Cc07_g02630 Coffea canephora HOM05D005035 ORTHO05D006141 8.1e-66 253.8 147 82.3
SalBow1G8037 Salvia bowleyana HOM05D005035 ORTHO05D006141 4.0e-65 251.5 158 78.5
Actinidia06042 Actinidia chinensis HOM05D005035 ORTHO05D006141 1.5e-64 249.6 150 80.0
HanXRQChr17g0548081 Helianthus annuus HOM05D005035 ORTHO05D006141 1.5e-64 249.6 151 80.1
Lsat_1_v5_gn_0_16560 Lactuca sativa HOM05D005035 ORTHO05D006141 2.0e-64 249.2 153 79.1
SGA_v2.0_scaffold30G12503 Striga asiatica HOM05D005035 ORTHO05D006141 2.0e-64 249.2 150 79.3
Gohir.A07G217600 Gossypium hirsutum HOM05D005035 ORTHO05D006141 5.8e-64 247.7 148 81.8
CSS0048749 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.3e-63 246.5 150 79.3
Gohir.D07G224700 Gossypium hirsutum HOM05D005035 ORTHO05D006141 1.7e-63 246.1 148 81.1
Sc06g0002600 Simmondsia chinensis HOM05D005035 ORTHO05D006141 1.7e-63 246.1 150 80.7
MSTRG.23981 Avicennia marina HOM05D005035 ORTHO05D006141 2.9e-63 245.4 150 80.0
Rhsim10G0028700 Rhododendron simsii HOM05D005035 ORTHO05D006141 4.9e-63 244.6 159 75.5
Thecc.04G003200 Theobroma cacao HOM05D005035 ORTHO05D006141 4.9e-63 244.6 148 83.8
Cfa007472 Carpinus fangiana HOM05D005035 ORTHO05D006141 3.2e-62 241.9 150 78.0
Rhsim10G0028000 Rhododendron simsii HOM05D005035 ORTHO05D006141 5.4e-62 241.1 168 71.4
Actinidia33975 Actinidia chinensis HOM05D005035 ORTHO05D006141 1.2e-61 240.0 152 75.0
CiPaw.03G034300 Carya illinoinensis HOM05D005035 ORTHO05D006141 1.2e-61 240.0 148 78.4
Gohir.A09G024500 Gossypium hirsutum HOM05D005035 ORTHO05D006141 3.5e-61 238.4 148 79.7
GSVIVG01032540001 Vitis vinifera HOM05D005035 ORTHO05D006141 3.5e-61 238.4 148 78.4
ECA246G3539 Erigeron canadensis HOM05D005035 ORTHO05D006141 6.0e-61 237.7 151 76.8
Nn4g22913 Nelumbo nucifera HOM05D005035 ORTHO05D006141 6.0e-61 237.7 148 79.1
TAR484G0003 Trochodendron aralioides HOM05D005035 ORTHO05D006141 7.8e-61 237.3 148 81.1
TAR629G3150 Trochodendron aralioides HOM05D005035 ORTHO05D006141 7.8e-61 237.3 148 81.1
Duzib147G0557 Durio zibethinus HOM05D005035 ORTHO05D006141 1.7e-60 236.1 144 80.6
DCAR_011194 Daucus carota HOM05D005035 ORTHO05D006141 2.3e-60 235.7 152 76.3
CANSAT21G0423 Cannabis sativa HOM05D005035 ORTHO05D006141 3.0e-60 235.3 148 78.4
Lsat_1_v5_gn_4_180660 Lactuca sativa HOM05D005035 ORTHO05D006141 5.1e-60 234.6 154 74.7
EL10Ac7g18004 Beta vulgaris HOM05D005035 ORTHO05D006141 6.6e-60 234.2 150 75.3
Manes.17G120300 Manihot esculenta HOM05D005035 ORTHO05D006141 8.6e-60 233.8 151 77.5
Potri.001G350900 Populus trichocarpa HOM05D005035 ORTHO05D006141 1.1e-59 233.4 144 75.0
unitig_52.g17602 Utricularia gibba HOM05D005035 ORTHO05D006141 1.5e-59 233.0 136 81.6
Aa31LG9G1530 Aethionema arabicum HOM05D005035 ORTHO05D006141 2.5e-59 232.3 140 80.0
AL3G42320 Arabidopsis lyrata HOM05D005035 ORTHO05D006141 3.3e-59 231.9 144 78.5
MD09G1039900 Malus domestica HOM05D005035 ORTHO05D006141 3.3e-59 231.9 140 80.0
Manes.15G180500 Manihot esculenta HOM05D005035 ORTHO05D006141 3.3e-59 231.9 151 78.1
Sabra16G0230300 Salix brachista HOM05D005035 ORTHO05D006141 3.3e-59 231.9 150 73.3
AT2G04700 Arabidopsis thaliana HOM05D005035 ORTHO05D006141 4.3e-59 231.5 144 78.5
Carub.0003s2630 Capsella rubella HOM05D005035 ORTHO05D006141 4.3e-59 231.5 144 77.8
PGR083G2790 Punica granatum HOM05D005035 ORTHO05D006141 5.6e-59 231.1 148 75.0
Sp7g01920 Schrenkiella parvula HOM05D005035 ORTHO05D006141 5.6e-59 231.1 140 79.3
MD17G1040500 Malus domestica HOM05D005035 ORTHO05D006141 7.3e-59 230.7 148 76.4
Ciclev10013034m.g Citrus clementina HOM05D005035 ORTHO05D006141 9.5e-59 230.3 151 74.2
Thhalv10027982m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 9.5e-59 230.3 140 80.0
Ca_04227_v3 Cicer arietinum L. HOM05D005035 ORTHO05D006141 1.2e-58 229.9 148 75.7
TWI56G1217 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 1.6e-58 229.6 125 84.0
TAR371G0568 Trochodendron aralioides HOM05D005035 ORTHO05D006141 1.6e-58 229.6 148 78.4
Thhalv10005082m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 2.8e-58 228.8 142 78.9
FvH4_6g50060 Fragaria vesca HOM05D005035 ORTHO05D006141 2.8e-58 228.8 135 80.7
Prupe.3G278500 Prunus persica HOM05D005035 ORTHO05D006141 2.8e-58 228.8 135 81.5
TWI36G0797 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 2.8e-58 228.8 144 74.3
Aqoxy3G00882 Aquilegia oxysepala HOM05D005035 ORTHO05D006141 3.6e-58 228.4 140 78.6
Lalb_Chr21g0319261 Lupinus albus HOM05D005035 ORTHO05D006141 3.6e-58 228.4 150 74.7
FAN05G0554 Fragaria x ananassa HOM05D005035 ORTHO05D006141 4.7e-58 228.0 147 76.2
unitig_62.g23432 Utricularia gibba HOM05D005035 ORTHO05D006141 4.7e-58 228.0 136 80.9
A04p12970 Brassica napus HOM05D005035 ORTHO05D006141 6.2e-58 227.6 144 77.8
BolC4t26254H Brassica oleracea HOM05D005035 ORTHO05D006141 6.2e-58 227.6 123 86.2
Medtr6g008220 Medicago truncatula HOM05D005035 ORTHO05D006141 6.2e-58 227.6 145 75.2
Sp2g17120 Schrenkiella parvula HOM05D005035 ORTHO05D006141 6.2e-58 227.6 140 78.6
Hund20034 Selenicereus undatus HOM05D005035 ORTHO05D006141 6.2e-58 227.6 137 80.3
BcaB06g27429 Brassica carinata HOM05D005035 ORTHO05D006141 8.1e-58 227.3 144 77.8
BraA04t16958Z Brassica rapa HOM05D005035 ORTHO05D006141 8.1e-58 227.3 144 77.8
Glyma.13G069100 Glycine max HOM05D005035 ORTHO05D006141 8.1e-58 227.3 150 76.0
Glyma.19G013800 Glycine max HOM05D005035 ORTHO05D006141 1.1e-57 226.9 149 75.2
PSO591G0214 Papaver somniferum HOM05D005035 ORTHO05D006141 1.1e-57 226.9 147 76.2
RcHm_v2.0_Chr2g0170331 Rosa chinensis HOM05D005035 ORTHO05D006141 1.1e-57 226.9 140 77.1
Lalb_Chr02g0159811 Lupinus albus HOM05D005035 ORTHO05D006141 1.4e-57 226.5 116 87.9
PSO832G3976 Papaver somniferum HOM05D005035 ORTHO05D006141 2.4e-57 225.7 141 76.6
Eucgr.J02172 Eucalyptus grandis HOM05D005035 ORTHO05D006141 3.1e-57 225.3 149 75.8
Lj2g0024232 Lotus japonicus HOM05D005035 ORTHO05D006141 4.0e-57 224.9 145 74.5
Lalb_Chr06g0176451 Lupinus albus HOM05D005035 ORTHO05D006141 5.2e-57 224.6 150 75.3
Phvul.004G020500 Phaseolus vulgaris HOM05D005035 ORTHO05D006141 5.2e-57 224.6 150 75.3
MBI14_g12780_MAGBIO Magnolia biondii HOM05D005035 ORTHO05D006141 6.8e-57 224.2 148 77.0
TPR.G31460 Trifolium pratense HOM05D005035 ORTHO05D006141 1.2e-56 223.4 144 74.3
THA.LOC104805419 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 2.0e-56 222.6 125 82.4
Hma1.2p1_0375F.1_g139040 Hydrangea macrophylla HOM05D005035 ORTHO05D006141 2.6e-56 222.2 141 75.9
AagrBONN_evm.TU.Sc2ySwM_340.374 Anthoceros agrestis HOM05D005035 ORTHO05D006141 7.6e-56 220.7 116 84.5
MELO3C021510.2 Cucumis melo HOM05D005035 ORTHO05D006141 7.6e-56 220.7 124 80.6
CsaV3_5G037480 Cucumis sativus L. HOM05D005035 ORTHO05D006141 7.6e-56 220.7 124 80.6
Gorai.001G259100 Gossypium raimondii HOM05D005035 ORTHO05D006141 7.6e-56 220.7 133 79.7
Duzib264G0892 Durio zibethinus HOM05D005035 ORTHO05D006141 9.9e-56 220.3 137 80.3
COL.COLO4_06152 Corchorus olitorius HOM05D005035 ORTHO05D006141 4.9e-55 218.0 134 81.3
HPP92_003737 Vanilla planifolia HOM05D005035 ORTHO05D006141 8.4e-55 217.2 116 83.6
Mapoly0037s0068 Marchantia polymorpha HOM05D005035 ORTHO05D006141 1.4e-54 216.5 123 82.1
CDE04G0448 Ceratophyllum demersum HOM05D005035 ORTHO05D006141 1.6e-53 213.0 126 77.8
QL93p0205_0142 Quercus lobata HOM05D005035 ORTHO05D006141 3.5e-53 211.8 161 64.6
SMO147G0038 Selaginella moellendorffii HOM05D005035 ORTHO05D006141 1.0e-52 210.3 112 83.9
Pp3c4_19340 Physcomitrium patens HOM05D005035 ORTHO05D006141 3.0e-52 208.8 146 70.5
VMungo0464G2121 Vigna mungo HOM05D005035 ORTHO05D006141 5.1e-52 208.0 153 66.7
FAN09G0974 Fragaria x ananassa HOM05D005035 ORTHO05D006141 6.6e-52 207.6 126 77.8
FAN14G3542 Fragaria x ananassa HOM05D005035 ORTHO05D006141 6.6e-52 207.6 126 77.8
FAN02G1276 Fragaria x ananassa HOM05D005035 ORTHO05D006141 8.6e-52 207.2 126 77.8
Psat1g079560 Pisum sativum HOM05D005035 ORTHO05D006141 3.3e-51 205.3 133 73.7
Zm00001eb373700 Zea mays HOM05D005035 ORTHO05D006141 3.3e-51 205.3 137 71.5
ClCG00G001700 Citrullus lanatus HOM05D005035 ORTHO05D006141 5.6e-51 204.5 173 59.0
ClCG09G018640 Citrullus lanatus HOM05D005035 ORTHO05D006141 5.6e-51 204.5 173 59.0
Os09g0249900 Oryza sativa ssp. japonica HOM05D005035 ORTHO05D006141 7.3e-51 204.1 138 69.6
Pp3c3_28450 Physcomitrium patens HOM05D005035 ORTHO05D006141 9.6e-51 203.8 109 81.7
ATR1101G065 Amborella trichopoda HOM05D005035 ORTHO05D006141 1.2e-50 203.4 133 76.7
MCO16G017 Micromonas commoda HOM05D005035 ORTHO05D006141 1.6e-50 203.0 135 68.9
AUR62041855 Chenopodium quinoa HOM05D005035 ORTHO05D006141 4.7e-50 201.4 175 60.0
Sed0002098 Sechium edule HOM05D005035 ORTHO05D006141 3.1e-49 198.7 101 87.1
AUR62022118 Chenopodium quinoa HOM05D005035 ORTHO05D006141 4.0e-49 198.4 104 81.7
Cre03.g193950 Chlamydomonas reinhardtii HOM05D005035 ORTHO05D006141 4.0e-49 198.4 134 70.9
AUR62001211 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.2e-48 196.8 104 80.8
CSS0001095 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 5.8e-48 194.5 155 65.8
Haze_14625 Corylus avellana HOM05D005035 ORTHO05D006141 3.8e-47 191.8 155 66.5
THA.LOC104822811 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 3.8e-47 191.8 105 81.9
CSS0000898 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.1e-46 190.3 159 64.2
PRCOL_00001533 Prasinoderma coloniale HOM05D005035 ORTHO05D006141 5.4e-46 188.0 130 67.7
arahy.Tifrunner.gnm1.ann1.JZED56 Arachis hypogaea HOM05D005035 ORTHO05D006141 4.8e-42 174.9 148 60.8
Gorai.006G028000 Gossypium raimondii HOM05D005035 ORTHO05D006141 1.1e-41 173.7 113 77.9
CBR_g4436 Chara braunii HOM05D005035 ORTHO05D006141 1.8e-41 172.9 91 82.4
CARHR102650 Cardamine hirsuta HOM05D005035 ORTHO05D006141 4.9e-39 164.9 109 74.3
SEGI_15320 Sequoiadendron giganteum HOM05D005035 ORTHO05D006141 1.1e-38 163.7 88 87.5
AUR62032082 Chenopodium quinoa HOM05D005035 ORTHO05D006141 4.2e-38 161.8 115 69.6
arahy.Tifrunner.gnm1.ann1.IKM8ZR Arachis hypogaea HOM05D005035 ORTHO05D006141 7.1e-38 161.0 112 70.5
Atru.chr8.2413 Acer truncatum HOM05D005035 ORTHO05D006141 8.7e-36 154.1 153 57.5
QL02p078168 Quercus lobata HOM05D005035 ORTHO05D006141 3.3e-35 152.1 78 80.8
Nn3g17009 Nelumbo nucifera HOM05D005035 ORTHO05D006141 7.1e-30 134.4 81 79.0
AUR62026990 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.3e-28 130.2 104 59.6
C04p46660 Brassica napus HOM05D005035 ORTHO05D006141 7.4e-27 124.4 61 86.9
Gohir.D09G023800 Gossypium hirsutum HOM05D005035 ORTHO05D006141 6.9e-25 117.9 88 72.7
Oeu031509.1 Olea europaea HOM05D005035 ORTHO05D006141 1.5e-24 116.7 312 30.1
Rhsim08G0061500 Rhododendron simsii HOM05D005035 ORTHO05D006141 2.0e-24 116.3 151 43.0
BcaB02g11482 Brassica carinata HOM05D005035 ORTHO05D006141 5.1e-20 101.7 72 63.9
vmacro18227 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 7.4e-19 97.8 77 70.1
BcaC04g21225 Brassica carinata HOM05D005035 ORTHO05D006141 6.3e-18 94.7 52 82.7
CSS0035672 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 2.1e-13 79.7 52 65.4
QL02p078176 Quercus lobata HOM05D005035 ORTHO05D006141 3.6e-13 79.0 66 63.6
CARHR102660 Cardamine hirsuta HOM05D005035 ORTHO05D006141 2.5e-11 72.8 42 78.6
Nn1g06334 Nelumbo nucifera HOM05D005035 ORTHO05D006141 4.3e-11 72.0 43 79.1
CSS0020716 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 6.3e-10 68.2 40 67.5
CSS0048463 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 3.1e-09 65.9 49 63.3
Nitab4.5_0002750g0060 Nicotiana tabacum HOM05D006608 ORTHO05D008316 1.3e-07 60.5 74 54.1
CSS0011814 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.1e-06 57.4 53 49.1
Nitab4.5_0005908g0020 Nicotiana tabacum HOM05D006608 ORTHO05D008316 1.1e-06 57.4 54 61.1
Peaxi162Scf00299g00341 Petunia axillaris HOM05D006608 ORTHO05D008316 3.2e-06 55.8 55 58.2
Sopen01g048480 Solanum pennellii HOM05D006608 ORTHO05D008316 3.2e-06 55.8 74 50.0
Solyc01g106090.3 Solanum lycopersicum HOM05D006608 ORTHO05D008316 4.2e-06 55.5 74 50.0
Dinv33674 Davidia involucrata HOM05D005035 ORTHO05D006141 7.2e-06 54.7 45 64.4


User provided reference genes

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