Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g087180.4 Solanum lycopersicum HOM05D004552 ORTHO05D005501 1.2e-220 769.6 426 100.0
Sopen02g031920 Solanum pennellii HOM05D004552 ORTHO05D005501 1.1e-197 693.3 397 97.7
CAN.G206.55 Capsicum annuum HOM05D004552 ORTHO05D005501 1.5e-173 613.2 400 88.2
Nitab4.5_0008076g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.4e-171 606.7 401 86.3
Nitab4.5_0006780g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.4e-168 596.7 401 85.5
Nitab4.5_0005206g0040 Nicotiana tabacum HOM05D004552 ORTHO05D005501 3.5e-167 592.0 401 85.3
CAN.G525.45 Capsicum annuum HOM05D004552 ORTHO05D005501 7.9e-167 590.9 427 80.3
Nitab4.5_0001952g0150 Nicotiana tabacum HOM05D004552 ORTHO05D005501 7.9e-167 590.9 401 84.3
Peaxi162Scf00569g00015 Petunia axillaris HOM05D004552 ORTHO05D005501 2.8e-164 582.4 398 82.9
PGSC0003DMG400000510 Solanum tuberosum HOM05D004552 ORTHO05D005501 2.9e-161 572.4 325 96.6
Solyc04g014240.1 Solanum lycopersicum HOM05D004552 ORTHO05D005501 2.1e-159 566.2 401 83.8
Sopen04g006350 Solanum pennellii HOM05D004552 ORTHO05D005501 1.4e-158 563.5 401 83.5
Dinv37242 Davidia involucrata HOM05D004552 ORTHO05D005501 4.2e-144 515.4 410 74.9
Actinidia19722 Actinidia chinensis HOM05D004552 ORTHO05D005501 2.0e-141 506.5 410 71.7
Oeu029550.1 Olea europaea HOM05D004552 ORTHO05D005501 3.3e-141 505.8 410 72.7
MSTRG.16520 Avicennia marina HOM05D004552 ORTHO05D005501 9.1e-139 497.7 410 71.5
Rhsim10G0168100 Rhododendron simsii HOM05D004552 ORTHO05D005501 1.7e-137 493.4 406 72.2
Rhsim11G0041500 Rhododendron simsii HOM05D004552 ORTHO05D005501 3.2e-136 489.2 406 71.7
Thecc.05G052700 Theobroma cacao HOM05D004552 ORTHO05D005501 8.8e-134 481.1 418 69.6
Oeu026072.1 Olea europaea HOM05D004552 ORTHO05D005501 1.5e-133 480.3 408 69.9
Cc00_g23990 Coffea canephora HOM05D004552 ORTHO05D005501 4.4e-133 478.8 411 69.8
Rhsim11G0041800 Rhododendron simsii HOM05D004552 ORTHO05D005501 6.3e-132 474.9 404 70.5
ClCG04G008790 Citrullus lanatus HOM05D004552 ORTHO05D005501 1.6e-130 470.3 408 68.4
TWI53G0358 Tripterygium wilfordii HOM05D004552 ORTHO05D005501 1.6e-130 470.3 423 69.0
PGR004G2024 Punica granatum HOM05D004552 ORTHO05D005501 5.9e-130 468.4 412 68.0
CSS0033785 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 2.9e-129 466.1 410 68.8
ClCG10G016170 Citrullus lanatus HOM05D004552 ORTHO05D005501 4.2e-128 462.2 398 69.1
DCAR_009290 Daucus carota HOM05D004552 ORTHO05D005501 9.4e-128 461.1 408 66.9
MELO3C014263.2 Cucumis melo HOM05D004552 ORTHO05D005501 8.8e-126 454.5 408 68.9
Sed0010830 Sechium edule HOM05D004552 ORTHO05D005501 2.6e-125 453.0 406 67.2
CsaV3_4G024350 Cucumis sativus L. HOM05D004552 ORTHO05D005501 7.5e-125 451.4 405 69.6
TAR369G0596 Trochodendron aralioides HOM05D004552 ORTHO05D005501 4.8e-124 448.7 411 67.6
SalBow4G1233 Salvia bowleyana HOM05D004552 ORTHO05D005501 1.1e-123 447.6 404 66.1
Duzib106G1297 Durio zibethinus HOM05D004552 ORTHO05D005501 1.8e-123 446.8 412 67.7
Hund08942 Selenicereus undatus HOM05D004552 ORTHO05D005501 3.1e-123 446.0 408 66.7
DCAR_002493 Daucus carota HOM05D004552 ORTHO05D005501 5.4e-123 445.3 407 66.1
HanXRQChr05g0156781 Helianthus annuus HOM05D004552 ORTHO05D005501 2.0e-122 443.4 403 67.0
THA.LOC104823245 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 7.7e-122 441.4 427 64.6
Migut.K00511 Erythranthe guttata HOM05D004552 ORTHO05D005501 1.0e-121 441.0 410 66.3
Ciclev10011831m.g Citrus clementina HOM05D004552 ORTHO05D005501 1.7e-121 440.3 421 64.8
QL07p045485 Quercus lobata HOM05D004552 ORTHO05D005501 1.7e-121 440.3 415 67.2
EL10Ac7g16819 Beta vulgaris HOM05D004552 ORTHO05D005501 6.6e-121 438.3 421 62.7
Haze_20666 Corylus avellana HOM05D004552 ORTHO05D005501 1.1e-120 437.6 410 67.6
Atru.chr8.2543 Acer truncatum HOM05D004552 ORTHO05D005501 4.2e-120 435.6 421 63.9
Lsat_1_v5_gn_5_8941 Lactuca sativa HOM05D004552 ORTHO05D005501 4.2e-120 435.6 402 65.2
CiPaw.09G181100 Carya illinoinensis HOM05D004552 ORTHO05D005501 3.6e-119 432.6 411 67.2
Cfa017496 Carpinus fangiana HOM05D004552 ORTHO05D005501 4.7e-119 432.2 409 65.8
RcHm_v2.0_Chr1g0360161 Rosa chinensis HOM05D004552 ORTHO05D005501 6.1e-119 431.8 409 65.8
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 4.4e-117 425.6 401 64.1
unitig_899.g15236 Utricularia gibba HOM05D004552 ORTHO05D005501 9.8e-117 424.5 411 64.5
Manes.09G079900 Manihot esculenta HOM05D004552 ORTHO05D005501 3.7e-116 422.5 410 63.2
AUR62025361 Chenopodium quinoa HOM05D004552 ORTHO05D005501 1.4e-115 420.6 408 63.5
arahy.Tifrunner.gnm1.ann1.URH0Q0 Arachis hypogaea HOM05D004552 ORTHO05D005501 2.4e-115 419.9 434 61.5
arahy.Tifrunner.gnm1.ann1.6MTV2V Arachis hypogaea HOM05D004552 ORTHO05D005501 4.1e-115 419.1 425 62.6
Lj3g0026232 Lotus japonicus HOM05D004552 ORTHO05D005501 4.1e-115 419.1 408 63.2
arahy.Tifrunner.gnm1.ann1.CZIV0N Arachis hypogaea HOM05D004552 ORTHO05D005501 9.2e-115 417.9 404 64.6
AUR62028362 Chenopodium quinoa HOM05D004552 ORTHO05D005501 1.2e-114 417.5 408 63.5
Lj5g0019559 Lotus japonicus HOM05D004552 ORTHO05D005501 1.2e-114 417.5 408 63.0
Gohir.A03G063400 Gossypium hirsutum HOM05D004552 ORTHO05D005501 2.7e-114 416.4 352 68.5
Prupe.2G197600 Prunus persica HOM05D004552 ORTHO05D005501 2.7e-114 416.4 412 63.6
arahy.Tifrunner.gnm1.ann1.LN9G9C Arachis hypogaea HOM05D004552 ORTHO05D005501 4.5e-114 415.6 404 64.4
Potri.016G084200 Populus trichocarpa HOM05D004552 ORTHO05D005501 1.3e-113 414.1 402 64.9
Nn1g07079 Nelumbo nucifera HOM05D004552 ORTHO05D005501 1.7e-113 413.7 420 64.0
Gohir.D03G102900 Gossypium hirsutum HOM05D004552 ORTHO05D005501 2.3e-113 413.3 352 68.5
Gorai.003G108400 Gossypium raimondii HOM05D004552 ORTHO05D005501 2.3e-113 413.3 352 68.5
Lj4g0012826 Lotus japonicus HOM05D004552 ORTHO05D005501 3.8e-113 412.5 408 62.7
Glyma.08G287300 Glycine max HOM05D004552 ORTHO05D005501 5.0e-113 412.1 399 64.2
Ah.14g084480 Amaranthus hybridus HOM05D004552 ORTHO05D005501 1.9e-112 410.2 407 60.4
VMungo0251G2800 Vigna mungo HOM05D004552 ORTHO05D005501 1.9e-112 410.2 396 62.9
COL.COLO4_27097 Corchorus olitorius HOM05D004552 ORTHO05D005501 2.5e-112 409.8 339 71.7
Cc03_g15870 Coffea canephora HOM05D004552 ORTHO05D005501 5.6e-112 408.7 408 63.2
Phvul.003G261400 Phaseolus vulgaris HOM05D004552 ORTHO05D005501 7.3e-112 408.3 398 64.3
Ca_19605_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 9.5e-112 407.9 409 62.6
Manes.08G002200 Manihot esculenta HOM05D004552 ORTHO05D005501 1.2e-111 407.5 414 62.8
Medtr8g075790 Medicago truncatula HOM05D004552 ORTHO05D005501 1.6e-111 407.1 409 62.3
PSO832G0086 Papaver somniferum HOM05D004552 ORTHO05D005501 2.1e-111 406.8 417 61.9
Sp6g39730 Schrenkiella parvula HOM05D004552 ORTHO05D005501 2.1e-111 406.8 429 62.5
Ca_22379_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 6.1e-111 405.2 411 62.5
TPR.G33503 Trifolium pratense HOM05D004552 ORTHO05D005501 1.0e-110 404.4 408 61.8
RcHm_v2.0_Chr1g0361081 Rosa chinensis HOM05D004552 ORTHO05D005501 2.3e-110 403.3 408 59.8
Medtr6g089780 Medicago truncatula HOM05D004552 ORTHO05D005501 4.0e-110 402.5 408 61.3
PSO210G6420 Papaver somniferum HOM05D004552 ORTHO05D005501 6.8e-110 401.7 415 61.0
CARHR210480 Cardamine hirsuta HOM05D004552 ORTHO05D005501 1.2e-109 401.0 429 62.2
Thhalv10013588m.g Eutrema salsugineum HOM05D004552 ORTHO05D005501 2.0e-109 400.2 436 59.6
Glyma.06G188800 Glycine max HOM05D004552 ORTHO05D005501 5.8e-109 398.7 399 62.7
SGA_v2.0_scaffold204G41624 Striga asiatica HOM05D004552 ORTHO05D005501 7.5e-109 398.3 409 63.1
CANSAT56G3582 Cannabis sativa HOM05D004552 ORTHO05D005501 2.2e-108 396.7 402 63.9
FAN03G3426 Fragaria x ananassa HOM05D004552 ORTHO05D005501 4.9e-108 395.6 410 60.0
BcaC06g32015 Brassica carinata HOM05D004552 ORTHO05D005501 8.3e-108 394.8 424 62.3
Glyma.13G067700 Glycine max HOM05D004552 ORTHO05D005501 1.4e-107 394.0 399 61.9
Lalb_Chr05g0229841 Lupinus albus HOM05D004552 ORTHO05D005501 1.4e-107 394.0 407 61.9
Sc07g0006230 Simmondsia chinensis HOM05D004552 ORTHO05D005501 1.4e-107 394.0 410 62.7
FAN01G0370 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.4e-107 393.3 435 57.9
FvH4_7g16920 Fragaria vesca HOM05D004552 ORTHO05D005501 4.1e-107 392.5 409 60.1
AT5G02850 Arabidopsis thaliana HOM05D004552 ORTHO05D005501 2.7e-106 389.8 428 61.4
Psat7g019080 Pisum sativum HOM05D004552 ORTHO05D005501 6.0e-106 388.7 431 59.2
FAN06G4506 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.3e-105 386.7 409 59.7
C09p73810 Brassica napus HOM05D004552 ORTHO05D005501 3.9e-105 386.0 423 61.5
BolC9t60115H Brassica oleracea HOM05D004552 ORTHO05D005501 3.9e-105 386.0 423 61.5
AL6G12120 Arabidopsis lyrata HOM05D004552 ORTHO05D005501 5.0e-105 385.6 429 60.4
A10p32880 Brassica napus HOM05D004552 ORTHO05D005501 1.8e-102 377.1 423 60.8
FAN06G3324 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.8e-102 377.1 395 59.7
Aa31LG1G22060 Aethionema arabicum HOM05D004552 ORTHO05D005501 1.2e-101 374.4 431 58.0
Manes.09G080009 Manihot esculenta HOM05D004552 ORTHO05D005501 1.2e-101 374.4 340 64.4
Carub.0006s0165 Capsella rubella HOM05D004552 ORTHO05D005501 2.2e-100 370.2 434 58.5
Lj6g0002066 Lotus japonicus HOM05D004552 ORTHO05D005501 1.1e-99 367.9 408 56.9
Eucgr.J03059 Eucalyptus grandis HOM05D004552 ORTHO05D005501 9.2e-99 364.8 442 57.0
TPR.G27980 Trifolium pratense HOM05D004552 ORTHO05D005501 9.2e-99 364.8 329 62.0
vmacro04719 Vaccinium macrocarpon HOM05D004552 ORTHO05D005501 9.2e-99 364.8 324 68.2
Aqoxy4G02198 Aquilegia oxysepala HOM05D004552 ORTHO05D005501 1.2e-98 364.4 430 57.9
FvH4_7g17650 Fragaria vesca HOM05D004552 ORTHO05D005501 1.2e-98 364.4 410 57.1
Sabra16G0091200 Salix brachista HOM05D004552 ORTHO05D005501 5.1e-97 359.0 329 65.7
arahy.Tifrunner.gnm1.ann1.52IM1F Arachis hypogaea HOM05D004552 ORTHO05D005501 6.6e-97 358.6 315 67.6
CDE04G3741 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 8.6e-97 358.2 405 58.5
SHI12593 Sapria himalayana HOM05D004552 ORTHO05D005501 8.6e-97 358.2 400 57.5
Psat4g100360 Pisum sativum HOM05D004552 ORTHO05D005501 1.5e-93 347.4 346 60.7
FAN03G1811 Fragaria x ananassa HOM05D004552 ORTHO05D005501 3.4e-93 346.3 406 54.7
Lj6g0014683 Lotus japonicus HOM05D004552 ORTHO05D005501 3.4e-93 346.3 360 60.3
FAN06G0991 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.2e-92 343.6 403 57.3
SGA_v2.0_scaffold94G28661 Striga asiatica HOM05D004552 ORTHO05D005501 3.2e-91 339.7 336 65.2
MBI18_g25517_MAGBIO Magnolia biondii HOM05D004552 ORTHO05D005501 2.1e-90 337.0 350 62.0
Lj6g0013650 Lotus japonicus HOM05D004552 ORTHO05D005501 1.2e-87 327.8 408 55.1
PSO675G1725 Papaver somniferum HOM05D004552 ORTHO05D005501 3.8e-84 316.2 347 56.2
Os09g0540500 Oryza sativa ssp. japonica HOM05D004552 ORTHO05D005501 3.2e-75 286.6 417 48.2
ATR0950G002 Amborella trichopoda HOM05D004552 ORTHO05D005501 1.7e-73 280.8 358 52.8
ATR0594G066 Amborella trichopoda HOM05D004552 ORTHO05D005501 1.9e-72 277.3 356 52.8
Zm00001eb103820 Zea mays HOM05D004552 ORTHO05D005501 2.5e-72 276.9 341 52.2
HPP92_012944 Vanilla planifolia HOM05D004552 ORTHO05D005501 1.3e-71 274.6 338 51.2
RhsimUnG0119000 Rhododendron simsii HOM05D004552 ORTHO05D005501 2.4e-70 270.4 238 68.5
SEGI_01207 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 5.1e-65 252.7 411 44.8
FAN01G0473 Fragaria x ananassa HOM05D004552 ORTHO05D005501 8.1e-63 245.4 407 46.9
CDE07G0444 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 4.9e-60 236.1 318 52.2
CSS0042772 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 3.1e-54 216.9 245 54.7
A03p00930 Brassica napus HOM05D004552 ORTHO05D005501 9.3e-51 205.3 207 58.9
C03p01200 Brassica napus HOM05D004552 ORTHO05D005501 1.3e-47 194.9 275 52.7
BolC3t12680H Brassica oleracea HOM05D004552 ORTHO05D005501 1.3e-47 194.9 275 52.7
BcaB01g05872 Brassica carinata HOM05D004552 ORTHO05D005501 6.3e-47 192.6 278 51.8
FvH4_6g20640 Fragaria vesca HOM05D004552 ORTHO05D005501 1.8e-46 191.0 239 49.4
THA.LOC104827455 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 6.9e-46 189.1 209 57.9
Actinidia11233 Actinidia chinensis HOM05D004552 ORTHO05D005501 6.5e-44 182.6 341 45.2
FAN14G1867 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.1e-43 181.8 168 56.5
PGSC0003DMG400023633 Solanum tuberosum HOM05D004552 ORTHO05D005501 3.2e-43 180.3 217 54.4
SEGI_11500 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 1.6e-42 177.9 342 43.0
Mapoly0007s0084 Marchantia polymorpha HOM05D004552 ORTHO05D005501 1.0e-41 175.3 374 39.0
Pp3c14_11490 Physcomitrium patens HOM05D004552 ORTHO05D005501 5.7e-40 169.5 346 37.6
AagrBONN_evm.TU.Sc2ySwM_362.1766 Anthoceros agrestis HOM05D004552 ORTHO05D005501 7.7e-37 159.1 383 37.1
Lsat_1_v5_gn_8_95200 Lactuca sativa HOM05D004552 ORTHO05D005501 1.1e-32 145.2 102 72.5
BraA03t09475Z Brassica rapa HOM05D004552 ORTHO05D005501 1.5e-32 144.8 200 49.0
VMungo0647G0506 Vigna mungo HOM05D004552 ORTHO05D005501 3.8e-28 130.2 107 69.2
BraA10t45325Z Brassica rapa HOM05D001414 ORTHO05D000619 2.5e-27 127.5 148 62.8
CBR_g38095 Chara braunii HOM05D004552 ORTHO05D005501 3.2e-27 127.1 250 36.8
Lj3E543T1 Lonicera japonica HOM05D004552 ORTHO05D005501 2.2e-23 114.4 117 73.5
AagrBONN_evm.TU.Sc2ySwM_344.2458 Anthoceros agrestis HOM05D004552 ORTHO05D005501 4.8e-15 86.7 230 27.8
Nitab4.5_0006780g0020 Nicotiana tabacum HOM05D004552 ORTHO05D005501 8.8e-09 65.9 41 78.0
Lsat_1_v5_gn_8_95180 Lactuca sativa HOM05D004552 ORTHO05D005501 1.5e-08 65.1 69 58.0
MCO09G463 Micromonas commoda HOM05D004552 ORTHO05D005501 8.3e-07 59.3 198 33.8


User provided reference genes

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