Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g086100.4 Solanum lycopersicum HOM05D006028 ORTHO05D007784 1.6e-86 322.8 168 100.0
Sopen02g030790 Solanum pennellii HOM05D006028 ORTHO05D007784 1.1e-84 316.6 168 98.2
PGSC0003DMG400026405 Solanum tuberosum HOM05D006028 ORTHO05D007784 1.1e-84 316.6 168 97.6
CAN.G625.27 Capsicum annuum HOM05D006028 ORTHO05D007784 7.6e-81 303.9 168 93.5
Nitab4.5_0004416g0010 Nicotiana tabacum HOM05D006028 ORTHO05D007784 2.2e-80 302.4 168 94.0
Nitab4.5_0000912g0170 Nicotiana tabacum HOM05D006028 ORTHO05D007784 2.7e-78 295.4 168 91.7
Peaxi162Scf00394g00620 Petunia axillaris HOM05D006028 ORTHO05D007784 8.2e-67 257.3 168 82.1
Dinv34819 Davidia involucrata HOM05D006028 ORTHO05D007784 1.6e-59 233.0 168 74.4
Atru.chr1.1685 Acer truncatum HOM05D006028 ORTHO05D007784 9.0e-58 227.3 168 71.4
Oeu008432.1 Olea europaea HOM05D006028 ORTHO05D007784 3.4e-57 225.3 168 71.4
CSS0038458 Camellia sinensis var. sinensis HOM05D006028 ORTHO05D007784 4.5e-57 224.9 168 70.8
Rhsim10G0067700 Rhododendron simsii HOM05D006028 ORTHO05D007784 1.0e-56 223.8 168 67.9
CSS0040274 Camellia sinensis var. sinensis HOM05D006028 ORTHO05D007784 3.8e-56 221.9 168 70.2
Thecc.04G133100 Theobroma cacao HOM05D006028 ORTHO05D007784 6.5e-56 221.1 168 69.0
Hma1.2p1_1109F.1_g258060 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 2.5e-55 219.2 169 68.0
Hma1.2p1_1109F.1_g258070 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 2.5e-55 219.2 169 68.0
Ciclev10011993m.g Citrus clementina HOM05D006028 ORTHO05D007784 5.5e-55 218.0 168 70.8
Cc07_g08770 Coffea canephora HOM05D006028 ORTHO05D007784 5.5e-55 218.0 168 68.5
GSVIVG01031016001 Vitis vinifera HOM05D006028 ORTHO05D007784 5.5e-55 218.0 168 66.7
MSTRG.17981 Avicennia marina HOM05D006028 ORTHO05D007784 2.7e-54 215.7 170 70.6
Lj2A441T56 Lonicera japonica HOM05D006028 ORTHO05D007784 3.6e-54 215.3 169 69.8
COL.COLO4_09340 Corchorus olitorius HOM05D006028 ORTHO05D007784 4.6e-54 214.9 168 67.9
TAR629G2682 Trochodendron aralioides HOM05D006028 ORTHO05D007784 7.9e-54 214.2 168 67.9
Actinidia15886 Actinidia chinensis HOM05D006028 ORTHO05D007784 3.0e-53 212.2 168 66.1
MD00G1149900 Malus domestica HOM05D006028 ORTHO05D007784 3.0e-53 212.2 171 66.1
SalBow3G3202 Salvia bowleyana HOM05D006028 ORTHO05D007784 3.0e-53 212.2 168 69.6
QL02p051191 Quercus lobata HOM05D006028 ORTHO05D007784 6.7e-53 211.1 167 64.7
QL02p051229 Quercus lobata HOM05D006028 ORTHO05D007784 6.7e-53 211.1 167 65.3
ECA246G2307 Erigeron canadensis HOM05D006028 ORTHO05D007784 2.0e-52 209.5 168 66.7
Cfa007919 Carpinus fangiana HOM05D006028 ORTHO05D007784 3.3e-52 208.8 168 66.7
Gohir.D12G052100 Gossypium hirsutum HOM05D006028 ORTHO05D007784 3.3e-52 208.8 166 65.7
Prupe.3G142900 Prunus persica HOM05D006028 ORTHO05D007784 3.3e-52 208.8 171 64.9
Haze_14159 Corylus avellana HOM05D006028 ORTHO05D007784 4.3e-52 208.4 168 66.1
Gohir.A12G053400 Gossypium hirsutum HOM05D006028 ORTHO05D007784 2.2e-51 206.1 166 65.1
Gorai.008G055200 Gossypium raimondii HOM05D006028 ORTHO05D007784 2.8e-51 205.7 166 64.5
Manes.02G069100 Manihot esculenta HOM05D006028 ORTHO05D007784 1.1e-50 203.8 168 64.9
TWI53G1478 Tripterygium wilfordii HOM05D006028 ORTHO05D007784 1.1e-50 203.8 168 63.1
CANSAT78G1220 Cannabis sativa HOM05D006028 ORTHO05D007784 1.4e-50 203.4 168 64.9
Haze_14158 Corylus avellana HOM05D006028 ORTHO05D007784 6.9e-50 201.1 176 63.1
FvH4_4g11350 Fragaria vesca HOM05D006028 ORTHO05D007784 5.9e-49 198.0 168 61.9
Potri.004G099000 Populus trichocarpa HOM05D006028 ORTHO05D007784 5.9e-49 198.0 169 65.1
Nn3g17886 Nelumbo nucifera HOM05D006028 ORTHO05D007784 7.7e-49 197.6 170 64.1
FAN07G0954 Fragaria x ananassa HOM05D006028 ORTHO05D007784 2.9e-48 195.7 168 61.3
CiPaw.03G061900 Carya illinoinensis HOM05D006028 ORTHO05D007784 3.8e-48 195.3 166 62.0
RcHm_v2.0_Chr6g0273571 Rosa chinensis HOM05D006028 ORTHO05D007784 3.8e-48 195.3 168 62.5
Migut.H00221 Erythranthe guttata HOM05D006028 ORTHO05D007784 3.2e-47 192.2 168 66.1
CsaV3_3G020280 Cucumis sativus L. HOM05D006028 ORTHO05D007784 4.2e-47 191.8 162 63.0
Glyma.02G226700 Glycine max HOM05D006028 ORTHO05D007784 9.4e-47 190.7 168 64.3
Glyma.14G193600 Glycine max HOM05D006028 ORTHO05D007784 1.6e-46 189.9 168 63.7
Lalb_Chr10g0103311 Lupinus albus HOM05D006028 ORTHO05D007784 2.7e-46 189.1 167 65.3
Sed0006429 Sechium edule HOM05D006028 ORTHO05D007784 2.7e-46 189.1 168 62.5
HanXRQChr12g0375811 Helianthus annuus HOM05D006028 ORTHO05D007784 6.1e-46 188.0 168 62.5
SGA_v2.0_scaffold33G13509 Striga asiatica HOM05D006028 ORTHO05D007784 1.8e-45 186.4 169 60.9
Hund13711 Selenicereus undatus HOM05D006028 ORTHO05D007784 2.3e-45 186.0 166 60.2
ClCG05G012120 Citrullus lanatus HOM05D006028 ORTHO05D007784 3.9e-45 185.3 153 64.1
LjContig00155g0021894 Lotus japonicus HOM05D006028 ORTHO05D007784 1.1e-44 183.7 168 62.5
MELO3C023751.2 Cucumis melo HOM05D006028 ORTHO05D007784 2.0e-44 183.0 154 62.3
Phvul.008G261300 Phaseolus vulgaris HOM05D006028 ORTHO05D007784 2.6e-44 182.6 168 62.5
Medtr5g070860 Medicago truncatula HOM05D006028 ORTHO05D007784 4.4e-44 181.8 150 66.7
PGR004G1556 Punica granatum HOM05D006028 ORTHO05D007784 5.7e-44 181.4 168 59.5
Carub.0003s3256 Capsella rubella HOM05D006028 ORTHO05D007784 7.4e-44 181.0 172 61.6
VMungo0647G1142 Vigna mungo HOM05D006028 ORTHO05D007784 1.3e-43 180.3 168 62.5
TPR.G23017 Trifolium pratense HOM05D006028 ORTHO05D007784 1.7e-43 179.9 168 62.5
Duzib138G1322 Durio zibethinus HOM05D006028 ORTHO05D007784 2.8e-43 179.1 168 58.3
AT2G18410 Arabidopsis thaliana HOM05D006028 ORTHO05D007784 4.8e-43 178.3 172 59.9
AUR62023297 Chenopodium quinoa HOM05D006028 ORTHO05D007784 4.8e-43 178.3 166 60.2
Sp3g31820 Schrenkiella parvula HOM05D006028 ORTHO05D007784 6.3e-43 177.9 172 58.7
SpUn0030_0010 Schrenkiella parvula HOM05D006028 ORTHO05D007784 6.3e-43 177.9 172 58.7
arahy.Tifrunner.gnm1.ann1.QNRR2Z Arachis hypogaea HOM05D006028 ORTHO05D007784 1.1e-42 177.2 170 61.8
AL3G51690 Arabidopsis lyrata HOM05D006028 ORTHO05D007784 1.4e-42 176.8 172 59.3
arahy.Tifrunner.gnm1.ann1.I9N3Y5 Arachis hypogaea HOM05D006028 ORTHO05D007784 1.4e-42 176.8 170 61.2
Aqoxy4G02499 Aquilegia oxysepala HOM05D006028 ORTHO05D007784 4.1e-42 175.3 170 57.6
Lsat_1_v5_gn_3_79681 Lactuca sativa HOM05D006028 ORTHO05D007784 2.0e-41 172.9 168 59.5
vmacro05550 Vaccinium macrocarpon HOM05D006028 ORTHO05D007784 3.5e-41 172.2 169 58.0
BcaC06g36407 Brassica carinata HOM05D006028 ORTHO05D007784 5.9e-41 171.4 172 55.2
BcaB03g16641 Brassica carinata HOM05D006028 ORTHO05D007784 7.7e-41 171.0 172 57.0
THA.LOC104820944 Tarenaya hassleriana HOM05D006028 ORTHO05D007784 1.0e-40 170.6 172 55.8
Thhalv10022737m.g Eutrema salsugineum HOM05D006028 ORTHO05D007784 5.0e-40 168.3 172 55.8
A07p02330 Brassica napus HOM05D006028 ORTHO05D007784 1.9e-39 166.4 176 55.1
C07p04450 Brassica napus HOM05D006028 ORTHO05D007784 2.5e-39 166.0 176 54.5
BolC7t40839H Brassica oleracea HOM05D006028 ORTHO05D007784 2.5e-39 166.0 176 54.5
BraA07t28024Z Brassica rapa HOM05D006028 ORTHO05D007784 2.5e-39 166.0 176 55.1
Aa31LG8G15620 Aethionema arabicum HOM05D006028 ORTHO05D007784 4.2e-39 165.2 171 56.7
AUR62009005 Chenopodium quinoa HOM05D006028 ORTHO05D007784 1.2e-38 163.7 184 53.8
CARHR109010 Cardamine hirsuta HOM05D006028 ORTHO05D007784 8.0e-38 161.0 173 56.1
Ca_05599_v3 Cicer arietinum L. HOM05D006028 ORTHO05D007784 1.4e-37 160.2 185 53.0
PSO017G5051 Papaver somniferum HOM05D006028 ORTHO05D007784 3.0e-37 159.1 173 53.2
EL10Ac2g04560 Beta vulgaris HOM05D006028 ORTHO05D007784 6.7e-37 157.9 166 54.8
Os03g0201700 Oryza sativa ssp. japonica HOM05D006028 ORTHO05D007784 8.8e-37 157.5 172 50.6
ATR1125G043 Amborella trichopoda HOM05D006028 ORTHO05D007784 2.6e-36 156.0 176 51.7
PSO478G1932 Papaver somniferum HOM05D006028 ORTHO05D007784 4.4e-36 155.2 173 53.2
Zm00001eb007750 Zea mays HOM05D006028 ORTHO05D007784 6.3e-35 151.4 173 53.8
Eucgr.F02499 Eucalyptus grandis HOM05D006028 ORTHO05D007784 2.4e-34 149.4 124 58.9
CDE05G1052 Ceratophyllum demersum HOM05D006028 ORTHO05D007784 5.3e-34 148.3 172 51.2
HPP92_018993 Vanilla planifolia HOM05D006028 ORTHO05D007784 9.1e-34 147.5 172 50.6
SEGI_33346 Sequoiadendron giganteum HOM05D006028 ORTHO05D007784 2.9e-32 142.5 180 45.6
Ah.16g101740 Amaranthus hybridus HOM05D006028 ORTHO05D007784 6.1e-30 134.8 166 48.2
Sabra04G0080900 Salix brachista HOM05D006028 ORTHO05D007784 7.5e-28 127.9 170 45.9
Pp3c5_13580 Physcomitrium patens HOM05D006028 ORTHO05D007784 1.8e-26 123.2 153 49.0
AagrBONN_evm.TU.Sc2ySwM_368.1688 Anthoceros agrestis HOM05D006028 ORTHO05D007784 8.5e-24 114.4 142 50.0
unitig_748.g7283 Utricularia gibba HOM05D006028 ORTHO05D007784 7.2e-23 111.3 114 57.0
Mapoly0156s0014 Marchantia polymorpha HOM05D006028 ORTHO05D007784 9.4e-23 110.9 149 48.3
SMO009G0016 Selaginella moellendorffii HOM05D006028 ORTHO05D007784 3.0e-21 105.9 137 48.9
SMO351G0506 Selaginella moellendorffii HOM05D006028 ORTHO05D007784 3.0e-21 105.9 137 48.9
CBR_g37698 Chara braunii HOM05D006028 ORTHO05D007784 1.5e-07 60.5 193 29.0


User provided reference genes

Program Settings