Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 6.2e-178 627.5 345 100.0
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 3.7e-175 618.2 345 98.3
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 5.1e-164 581.3 345 91.6
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 7.3e-163 577.4 345 92.2
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 1.8e-161 572.8 345 89.3
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 5.5e-142 508.1 345 80.0
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 6.7e-140 501.1 345 79.7
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 3.3e-139 498.8 345 79.4
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 4.3e-139 498.4 345 77.7
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 5.6e-139 498.0 345 76.8
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 9.6e-139 497.3 345 76.2
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 3.7e-138 495.4 344 77.0
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 4.8e-138 495.0 345 76.2
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.1e-137 493.8 315 85.1
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 1.8e-137 493.0 345 75.7
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 2.4e-137 492.7 345 77.1
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 3.1e-137 492.3 345 75.9
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 9.0e-137 490.7 345 75.1
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 1.5e-136 490.0 346 77.2
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 7.6e-136 487.6 345 74.8
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 2.2e-135 486.1 345 74.5
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 6.5e-135 484.6 345 74.2
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 8.4e-135 484.2 345 74.5
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 1.9e-134 483.0 335 75.5
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 5.5e-134 481.5 345 73.6
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 7.1e-134 481.1 345 76.2
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 1.3e-132 476.9 347 74.6
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 2.3e-132 476.1 335 74.6
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 3.0e-132 475.7 337 73.6
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 3.0e-132 475.7 345 73.9
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 8.7e-132 474.2 341 73.6
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 1.5e-131 473.4 345 75.4
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 3.3e-131 472.2 345 71.6
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 4.3e-131 471.9 345 73.6
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 1.3e-130 470.3 261 97.7
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 1.6e-130 469.9 345 71.3
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 8.2e-130 467.6 345 73.0
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 8.2e-130 467.6 345 74.2
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 2.4e-129 466.1 345 73.6
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 4.1e-129 465.3 345 73.6
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 6.9e-129 464.5 345 73.3
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.5e-128 463.4 345 73.3
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 2.0e-128 463.0 335 73.7
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 2.6e-128 462.6 345 73.0
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 5.9e-128 461.5 345 72.8
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 5.9e-128 461.5 345 72.2
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 5.9e-128 461.5 287 87.1
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 7.6e-128 461.1 335 72.5
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 1.3e-127 460.3 345 71.0
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 6.5e-127 458.0 345 70.4
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 1.1e-126 457.2 374 69.3
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 2.5e-126 456.1 341 75.1
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 5.5e-126 454.9 319 76.8
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 3.6e-125 452.2 345 69.6
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 4.6e-125 451.8 345 72.5
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.8e-124 449.9 345 71.9
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 6.7e-124 448.0 345 69.9
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 8.7e-124 447.6 342 69.9
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 5.7e-123 444.9 345 69.6
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 2.4e-121 439.5 337 68.5
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 6.9e-121 438.0 345 68.4
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 1.2e-120 437.2 337 68.0
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 1.5e-120 436.8 338 68.3
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 7.7e-120 434.5 345 66.7
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 5.0e-119 431.8 343 67.1
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 4.2e-118 428.7 345 69.3
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 9.4e-118 427.6 319 72.7
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 6.1e-117 424.9 345 69.3
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 6.1e-117 424.9 343 66.5
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 8.8e-116 421.0 345 67.5
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 2.0e-115 419.9 335 68.1
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 7.4e-115 417.9 345 67.2
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 1.8e-113 413.3 292 74.3
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 6.9e-113 411.4 394 60.9
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 9.1e-113 411.0 345 65.8
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 7.7e-112 407.9 328 68.0
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.7e-111 406.8 345 66.4
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 3.6e-109 399.1 345 64.3
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 7.9e-109 397.9 346 63.9
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 4.4e-107 392.1 345 64.9
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 4.4e-107 392.1 345 64.1
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 7.4e-107 391.3 345 63.2
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 2.8e-106 389.4 340 62.6
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 3.7e-106 389.0 345 64.9
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 4.8e-106 388.7 345 64.6
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 1.4e-105 387.1 289 69.9
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 9.1e-105 384.4 337 62.9
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 4.5e-104 382.1 344 64.2
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 2.9e-103 379.4 345 60.9
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 6.5e-103 378.3 347 60.8
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 2.7e-101 372.9 345 61.4
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 2.7e-101 372.9 345 61.4
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 8.0e-101 371.3 373 59.0
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 1.8e-100 370.2 319 66.1
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 1.3e-98 364.0 345 58.6
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 2.2e-98 363.2 345 59.4
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 3.7e-98 362.5 336 59.5
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 1.4e-97 360.5 345 58.6
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 1.8e-97 360.1 338 59.8
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 2.4e-97 359.8 345 59.1
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 2.4e-97 359.8 348 59.2
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 3.5e-96 355.9 345 60.9
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 5.9e-96 355.1 345 59.1
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 1.3e-95 354.0 345 58.3
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 3.8e-95 352.4 350 58.0
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 8.5e-95 351.3 366 56.8
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 1.9e-94 350.1 343 58.6
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 5.5e-94 348.6 349 57.6
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 7.2e-94 348.2 334 58.7
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 1.0e-92 344.4 348 57.2
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 1.8e-92 343.6 345 59.1
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 9.8e-91 337.8 340 57.1
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 9.1e-89 331.3 322 59.0
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 2.7e-88 329.7 322 60.2
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 2.9e-87 326.2 346 56.4
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 2.9e-87 326.2 346 56.4
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 1.9e-86 323.6 346 55.5
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 1.6e-85 320.5 346 54.9
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 2.3e-84 316.6 346 55.5
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 3.0e-84 316.2 338 55.0
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 1.5e-83 313.9 286 62.6
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 4.4e-83 312.4 351 54.1
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 1.7e-82 310.5 288 60.4
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 6.3e-82 308.5 328 56.1
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 1.2e-80 304.3 345 52.5
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 1.6e-80 303.9 334 49.4
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 3.5e-80 302.8 343 55.1
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 5.9e-80 302.0 346 53.2
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.0e-79 301.2 344 54.1
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 5.0e-79 298.9 346 52.0
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 8.6e-79 298.1 303 60.1
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 2.5e-78 296.6 323 54.8
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 4.3e-78 295.8 335 49.9
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 2.3e-76 290.0 318 54.4
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 1.2e-75 287.7 323 54.2
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 2.0e-75 287.0 343 53.1
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 2.9e-74 283.1 323 49.8
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 9.2e-73 278.1 323 52.6
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 9.2e-73 278.1 342 48.8
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 2.3e-71 273.5 285 58.9
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 3.9e-71 272.7 264 59.5
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 5.6e-70 268.9 284 57.7
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 7.3e-70 268.5 296 56.4
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 4.7e-69 265.8 303 55.4
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 3.1e-68 263.1 270 59.3
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 8.9e-68 261.5 345 47.2
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 4.9e-66 255.8 312 49.0
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 8.1e-61 238.4 291 49.1
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 5.2e-60 235.7 342 41.2
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 5.2e-60 235.7 339 45.7
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 8.9e-60 235.0 335 42.4
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 2.2e-58 230.3 356 44.7
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 1.2e-56 224.6 354 43.5
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 5.6e-54 215.7 138 87.7
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 1.4e-52 211.1 290 45.9
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 9.9e-51 204.9 342 37.7
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 2.2e-50 203.8 239 52.3
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 3.5e-48 196.4 254 48.4
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 5.8e-43 179.1 138 71.0
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 1.3e-42 177.9 185 50.8
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 4.9e-42 176.0 304 43.8
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 1.1e-41 174.9 228 47.8
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 7.8e-40 168.7 158 65.2
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 2.4e-36 157.1 322 38.5
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 2.4e-33 147.1 321 36.8
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 2.4e-28 130.6 292 37.7
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 3.8e-26 123.2 311 34.1
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 3.8e-26 123.2 311 34.1
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 8.4e-26 122.1 172 48.8
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 3.2e-17 93.6 127 53.5
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 7.9e-16 89.0 55 87.3
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 7.4e-14 82.4 292 30.8
BraA09t36810Z Brassica rapa HOM05D001533 ORTHO05D019802 7.4e-14 82.4 111 51.4
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 6.3e-13 79.3 54 77.8
BolC9t54258H Brassica oleracea HOM05D001533 ORTHO05D019802 1.5e-06 58.2 132 40.9
BcaC04g22938 Brassica carinata HOM05D001533 ORTHO05D019802 5.7e-06 56.2 125 39.2


User provided reference genes

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