Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g080810.3 Solanum lycopersicum HOM05D004784 ORTHO05D005762 3.0e-240 834.7 407 100.0
Sopen02g025500 Solanum pennellii HOM05D004784 ORTHO05D005762 4.3e-239 830.9 407 99.3
PGSC0003DMG400016444 Solanum tuberosum HOM05D004784 ORTHO05D005762 1.6e-238 828.9 407 99.0
Nitab4.5_0002695g0040 Nicotiana tabacum HOM05D004784 ORTHO05D005762 2.5e-234 815.1 407 96.1
Peaxi162Scf00131g01117 Petunia axillaris HOM05D004784 ORTHO05D005762 5.5e-234 813.9 406 96.1
Nitab4.5_0007963g0010 Nicotiana tabacum HOM05D004784 ORTHO05D005762 7.2e-234 813.5 407 96.1
CAN.G1014.12 Capsicum annuum HOM05D004784 ORTHO05D005762 2.2e-230 802.0 407 94.6
Cc09_g01490 Coffea canephora HOM05D004784 ORTHO05D005762 1.5e-223 779.2 406 90.9
MELO3C002444.2 Cucumis melo HOM05D004784 ORTHO05D005762 7.4e-223 776.9 406 90.4
CsaV3_1G010620 Cucumis sativus L. HOM05D004784 ORTHO05D005762 2.2e-222 775.4 406 90.4
Sed0006727 Sechium edule HOM05D004784 ORTHO05D005762 1.4e-221 772.7 406 90.1
ClCG03G004610 Citrullus lanatus HOM05D004784 ORTHO05D005762 2.0e-220 768.8 406 89.4
Hma1.2p1_0091F.1_g046500 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 3.4e-220 768.1 404 89.4
Oeu002744.1 Olea europaea HOM05D004784 ORTHO05D005762 5.9e-220 767.3 404 90.8
Lalb_Chr18g0056491 Lupinus albus HOM05D004784 ORTHO05D005762 7.7e-220 766.9 407 89.7
Manes.17G025900 Manihot esculenta HOM05D004784 ORTHO05D005762 7.7e-220 766.9 406 89.9
Sed0013135 Sechium edule HOM05D004784 ORTHO05D005762 7.7e-220 766.9 406 89.7
QL05p072692 Quercus lobata HOM05D004784 ORTHO05D005762 1.0e-219 766.5 406 89.4
Duzib192G0808 Durio zibethinus HOM05D004784 ORTHO05D005762 2.9e-219 765.0 406 89.4
Glyma.09G004700 Glycine max HOM05D004784 ORTHO05D005762 2.9e-219 765.0 406 89.4
SalBow8G0639 Salvia bowleyana HOM05D004784 ORTHO05D005762 2.9e-219 765.0 403 90.3
Oeu013835.1 Olea europaea HOM05D004784 ORTHO05D005762 3.8e-219 764.6 404 89.9
Lj1A1232G87 Lonicera japonica HOM05D004784 ORTHO05D005762 8.5e-219 763.5 405 89.9
COL.COLO4_31797 Corchorus olitorius HOM05D004784 ORTHO05D005762 1.4e-218 762.7 406 88.2
TWI38G1114 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 1.4e-218 762.7 404 90.3
Glyma.17G012000 Glycine max HOM05D004784 ORTHO05D005762 1.9e-218 762.3 406 88.7
Lj6g0010262 Lotus japonicus HOM05D004784 ORTHO05D005762 2.5e-218 761.9 406 89.4
Thecc.06G223500 Theobroma cacao HOM05D004784 ORTHO05D005762 2.5e-218 761.9 406 89.4
CiPaw.09G093700 Carya illinoinensis HOM05D004784 ORTHO05D005762 3.2e-218 761.5 404 88.6
Glyma.07G262100 Glycine max HOM05D004784 ORTHO05D005762 4.2e-218 761.1 406 88.2
Phvul.003G080400 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 4.2e-218 761.1 406 88.4
TWI63G0560 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 5.5e-218 760.8 404 89.9
Dinv13913 Davidia involucrata HOM05D004784 ORTHO05D005762 7.2e-218 760.4 403 89.3
VMungo1215G1817 Vigna mungo HOM05D004784 ORTHO05D005762 7.2e-218 760.4 406 88.7
Dinv20065 Davidia involucrata HOM05D004784 ORTHO05D005762 9.4e-218 760.0 403 89.6
Ca_21072_v3 Cicer arietinum L. HOM05D004784 ORTHO05D005762 1.2e-217 759.6 406 88.4
arahy.Tifrunner.gnm1.ann1.EH8QHL Arachis hypogaea HOM05D004784 ORTHO05D005762 1.6e-217 759.2 406 88.7
QL02p099920 Quercus lobata HOM05D004784 ORTHO05D005762 2.1e-217 758.8 407 88.5
Gohir.A05G171500 Gossypium hirsutum HOM05D004784 ORTHO05D005762 3.6e-217 758.1 406 88.7
Gohir.A06G149200 Gossypium hirsutum HOM05D004784 ORTHO05D005762 3.6e-217 758.1 406 88.7
Gohir.D05G174600 Gossypium hirsutum HOM05D004784 ORTHO05D005762 4.7e-217 757.7 406 88.9
FvH4_3g01820 Fragaria vesca HOM05D004784 ORTHO05D005762 6.1e-217 757.3 404 88.9
MSTRG.7197 Avicennia marina HOM05D004784 ORTHO05D005762 8.0e-217 756.9 404 89.4
Gorai.010G181500 Gossypium raimondii HOM05D004784 ORTHO05D005762 8.0e-217 756.9 406 88.4
Hma1.2p1_0298F.1_g117720 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 8.0e-217 756.9 404 89.1
FAN25G0478 Fragaria x ananassa HOM05D004784 ORTHO05D005762 1.0e-216 756.5 404 88.9
TAR629G2745 Trochodendron aralioides HOM05D004784 ORTHO05D005762 1.0e-216 756.5 403 88.6
Prupe.4G018500 Prunus persica HOM05D004784 ORTHO05D005762 1.4e-216 756.1 407 87.7
Gohir.D06G155300 Gossypium hirsutum HOM05D004784 ORTHO05D005762 1.8e-216 755.7 406 88.4
Lalb_Chr15g0087671 Lupinus albus HOM05D004784 ORTHO05D005762 1.8e-216 755.7 407 88.9
RcHm_v2.0_Chr5g0002651 Rosa chinensis HOM05D004784 ORTHO05D005762 2.3e-216 755.4 404 88.6
TPR.G37066 Trifolium pratense HOM05D004784 ORTHO05D005762 2.3e-216 755.4 406 87.4
unitig_92.g28113 Utricularia gibba HOM05D004784 ORTHO05D005762 2.3e-216 755.4 406 88.4
Glyma.15G109300 Glycine max HOM05D004784 ORTHO05D005762 3.9e-216 754.6 406 88.2
Medtr4g132360 Medicago truncatula HOM05D004784 ORTHO05D005762 1.1e-215 753.1 406 87.4
CiPaw.10G073000 Carya illinoinensis HOM05D004784 ORTHO05D005762 2.0e-215 752.3 404 87.9
Rhsim13G0152700 Rhododendron simsii HOM05D004784 ORTHO05D005762 2.0e-215 752.3 407 89.2
Sabra11G0005900 Salix brachista HOM05D004784 ORTHO05D005762 2.0e-215 752.3 404 87.9
Migut.M01336 Erythranthe guttata HOM05D004784 ORTHO05D005762 4.4e-215 751.1 408 87.7
MD10G1323700 Malus domestica HOM05D004784 ORTHO05D005762 4.4e-215 751.1 407 87.2
PGR142G1596 Punica granatum HOM05D004784 ORTHO05D005762 5.7e-215 750.7 406 88.2
FAN21G1227 Fragaria x ananassa HOM05D004784 ORTHO05D005762 7.4e-215 750.4 404 88.1
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 1.7e-214 749.2 405 87.7
Hund21422 Selenicereus undatus HOM05D004784 ORTHO05D005762 2.2e-214 748.8 404 87.6
CANSAT56G2555 Cannabis sativa HOM05D004784 ORTHO05D005762 6.3e-214 747.3 406 86.9
Potri.004G009600 Populus trichocarpa HOM05D004784 ORTHO05D005762 8.2e-214 746.9 404 87.4
Potri.011G006800 Populus trichocarpa HOM05D004784 ORTHO05D005762 8.2e-214 746.9 404 87.1
vmacro03682 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 8.2e-214 746.9 419 87.1
Haze_06821 Corylus avellana HOM05D004784 ORTHO05D005762 1.4e-213 746.1 404 86.9
Nn1g03473 Nelumbo nucifera HOM05D004784 ORTHO05D005762 1.4e-213 746.1 448 81.0
MBI02_g15378_MAGBIO Magnolia biondii HOM05D004784 ORTHO05D005762 2.4e-213 745.3 408 88.0
Atru.chr10.2254 Acer truncatum HOM05D004784 ORTHO05D005762 5.3e-213 744.2 404 87.6
Cfa000202 Carpinus fangiana HOM05D004784 ORTHO05D005762 5.3e-213 744.2 404 86.6
Sp1g10470 Schrenkiella parvula HOM05D004784 ORTHO05D005762 5.3e-213 744.2 407 87.5
Eucgr.L02773 Eucalyptus grandis HOM05D004784 ORTHO05D005762 1.6e-212 742.7 404 86.9
Aqoxy1G03119 Aquilegia oxysepala HOM05D004784 ORTHO05D005762 2.0e-212 742.3 404 86.4
arahy.Tifrunner.gnm1.ann1.PLZ2LX Arachis hypogaea HOM05D004784 ORTHO05D005762 2.6e-212 741.9 398 88.4
A09p64310 Brassica napus HOM05D004784 ORTHO05D005762 2.6e-212 741.9 407 86.5
BolC8t52329H Brassica oleracea HOM05D004784 ORTHO05D005762 2.6e-212 741.9 407 86.5
BraA09t41774Z Brassica rapa HOM05D004784 ORTHO05D005762 2.6e-212 741.9 407 86.5
Sc24g0000220 Simmondsia chinensis HOM05D004784 ORTHO05D005762 2.6e-212 741.9 406 86.2
Hund23455 Selenicereus undatus HOM05D004784 ORTHO05D005762 4.5e-212 741.1 404 85.9
THA.LOC104809494 Tarenaya hassleriana HOM05D004784 ORTHO05D005762 4.5e-212 741.1 407 86.7
Psat4g005920 Pisum sativum HOM05D004784 ORTHO05D005762 7.7e-212 740.3 407 86.0
C08p47920 Brassica napus HOM05D004784 ORTHO05D005762 1.3e-211 739.6 407 86.2
DCAR_008168 Daucus carota HOM05D004784 ORTHO05D005762 1.3e-211 739.6 419 84.7
Thhalv10007781m.g Eutrema salsugineum HOM05D004784 ORTHO05D005762 1.7e-211 739.2 407 86.5
MSTRG.14637 Avicennia marina HOM05D004784 ORTHO05D005762 2.2e-211 738.8 407 85.7
CARHR012170 Cardamine hirsuta HOM05D004784 ORTHO05D005762 2.2e-211 738.8 407 86.5
AT1G11860 Arabidopsis thaliana HOM05D004784 ORTHO05D005762 2.9e-211 738.4 407 86.2
Ciclev10015433m.g Citrus clementina HOM05D004784 ORTHO05D005762 8.5e-211 736.9 408 86.5
AL1G23030 Arabidopsis lyrata HOM05D004784 ORTHO05D005762 1.5e-210 736.1 407 85.7
SGA_v2.0_scaffold7G03812 Striga asiatica HOM05D004784 ORTHO05D005762 1.9e-210 735.7 431 83.3
PSO541G3045 Papaver somniferum HOM05D004784 ORTHO05D005762 2.5e-210 735.3 405 85.2
AUR62022970 Chenopodium quinoa HOM05D004784 ORTHO05D005762 4.2e-210 734.6 406 85.0
CDE05G1701 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 5.5e-210 734.2 406 85.0
PSO675G1799 Papaver somniferum HOM05D004784 ORTHO05D005762 5.5e-210 734.2 405 84.9
Aa31LG1G2870 Aethionema arabicum HOM05D004784 ORTHO05D005762 9.4e-210 733.4 407 85.5
Carub.0001s1151 Capsella rubella HOM05D004784 ORTHO05D005762 1.2e-209 733.0 407 85.5
Ah.09g234740 Amaranthus hybridus HOM05D004784 ORTHO05D005762 1.6e-209 732.6 407 85.5
BraA08t35239Z Brassica rapa HOM05D004784 ORTHO05D005762 1.6e-209 732.6 408 86.3
C08p14960 Brassica napus HOM05D004784 ORTHO05D005762 3.6e-209 731.5 408 85.8
BolC8t49127H Brassica oleracea HOM05D004784 ORTHO05D005762 3.6e-209 731.5 408 85.8
AUR62012328 Chenopodium quinoa HOM05D004784 ORTHO05D005762 3.6e-209 731.5 406 84.2
RhsimUnG0232700 Rhododendron simsii HOM05D004784 ORTHO05D005762 3.6e-209 731.5 450 80.7
CDE02G4424 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 1.8e-208 729.2 406 85.0
Ah.14g087950 Amaranthus hybridus HOM05D004784 ORTHO05D005762 4.0e-208 728.0 404 84.7
vmacro22539 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 5.2e-208 727.6 470 77.9
Sc05g0009310 Simmondsia chinensis HOM05D004784 ORTHO05D005762 1.5e-207 726.1 406 84.0
Lsat_1_v5_gn_7_16480 Lactuca sativa HOM05D004784 ORTHO05D005762 1.8e-205 719.2 388 88.4
Oeu040336.3 Olea europaea HOM05D004784 ORTHO05D005762 7.0e-205 717.2 515 70.9
Nn030s41595 Nelumbo nucifera HOM05D004784 ORTHO05D005762 3.5e-204 714.9 378 89.4
EL10Ac6g15683 Beta vulgaris HOM05D004784 ORTHO05D005762 1.7e-203 712.6 447 76.7
Gorai.009G179900 Gossypium raimondii HOM05D004784 ORTHO05D005762 8.5e-203 710.3 383 88.8
Sabra04G0005000 Salix brachista HOM05D004784 ORTHO05D005762 1.4e-200 703.0 382 87.4
HPP92_004130 Vanilla planifolia HOM05D004784 ORTHO05D005762 7.5e-199 697.2 408 81.6
ATR0794G107 Amborella trichopoda HOM05D004784 ORTHO05D005762 1.3e-198 696.4 415 81.2
A08p33210 Brassica napus HOM05D004784 ORTHO05D005762 5.4e-197 691.0 408 82.6
GSVIVG01012702001 Vitis vinifera HOM05D004784 ORTHO05D005762 5.5e-194 681.0 356 90.7
SEGI_27497 Sequoiadendron giganteum HOM05D004784 ORTHO05D005762 3.0e-192 675.2 407 77.6
HanXRQChr15g0470421 Helianthus annuus HOM05D004784 ORTHO05D005762 1.5e-191 672.9 357 89.4
Os04g0623800 Oryza sativa ssp. japonica HOM05D004784 ORTHO05D005762 7.5e-191 670.6 399 79.7
ECA236G1893 Erigeron canadensis HOM05D004784 ORTHO05D005762 1.2e-188 663.3 406 80.0
Zm00001eb070250 Zea mays HOM05D004784 ORTHO05D005762 2.3e-187 659.1 377 81.4
BcaB03g13227 Brassica carinata HOM05D004784 ORTHO05D005762 6.6e-187 657.5 356 87.1
Pp3c12_9500 Physcomitrium patens HOM05D004784 ORTHO05D005762 4.6e-180 634.8 410 72.9
Pp3c4_15010 Physcomitrium patens HOM05D004784 ORTHO05D005762 6.0e-180 634.4 412 72.8
AagrBONN_evm.TU.Sc2ySwM_344.1952 Anthoceros agrestis HOM05D004784 ORTHO05D005762 1.1e-173 613.6 406 71.7
Mapoly0129s0024 Marchantia polymorpha HOM05D004784 ORTHO05D005762 1.4e-173 613.2 405 70.6
TAR627G1106 Trochodendron aralioides HOM05D004784 ORTHO05D005762 9.5e-170 600.5 317 89.3
SMO352G0047 Selaginella moellendorffii HOM05D004784 ORTHO05D005762 8.3e-166 587.4 387 72.4
CSS0014504 Camellia sinensis var. sinensis HOM05D004784 ORTHO05D005762 9.9e-159 563.9 389 72.8
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 1.2e-156 557.0 407 70.0
TAR626G0807 Trochodendron aralioides HOM05D004784 ORTHO05D005762 6.0e-148 528.1 282 88.3
Actinidia26902 Actinidia chinensis HOM05D004784 ORTHO05D005762 2.4e-144 516.2 310 82.6
Cre03.g193750 Chlamydomonas reinhardtii HOM05D004784 ORTHO05D005762 4.9e-142 508.4 400 62.2
Atru.chr8.533 Acer truncatum HOM05D004784 ORTHO05D005762 2.4e-128 463.0 255 85.5
Eucgr.E03909 Eucalyptus grandis HOM05D004784 ORTHO05D005762 1.5e-127 460.3 245 89.0
PRCOL_00007041 Prasinoderma coloniale HOM05D004784 ORTHO05D005762 6.5e-126 454.9 369 61.2
MCO15G045 Micromonas commoda HOM05D004784 ORTHO05D005762 1.8e-120 436.8 383 56.4
MD05G1348800 Malus domestica HOM05D004784 ORTHO05D005762 2.9e-118 429.5 238 85.3
Lalb_Chr20g0118761 Lupinus albus HOM05D004784 ORTHO05D005762 5.5e-117 425.2 227 88.1
BraA06t24032Z Brassica rapa HOM05D000911 ORTHO05D001266 9.4e-109 397.9 239 80.8
Cpa.g.sc152.29 Carica papaya HOM05D004784 ORTHO05D005762 3.0e-99 366.3 195 88.2
Cfa026602 Carpinus fangiana HOM05D004784 ORTHO05D005762 1.7e-81 307.4 419 42.2
Sopen07g011340 Solanum pennellii HOM05D004784 ORTHO05D005762 1.5e-77 294.3 181 81.2
Haze_26660 Corylus avellana HOM05D004784 ORTHO05D005762 4.7e-76 289.3 390 44.4
CBR_g24348 Chara braunii HOM05D004784 ORTHO05D005762 2.7e-71 273.5 180 73.9
EL10Ac1g01135 Beta vulgaris HOM05D004784 ORTHO05D005762 1.2e-58 231.5 141 75.9
EL10Ac2g03767 Beta vulgaris HOM05D004784 ORTHO05D005762 2.0e-58 230.7 140 76.4
Atru.chr8.531 Acer truncatum HOM05D004784 ORTHO05D005762 1.7e-54 217.6 124 82.3
Actinidia05506 Actinidia chinensis HOM05D004784 ORTHO05D005762 3.4e-50 203.4 130 79.2
Actinidia11861 Actinidia chinensis HOM05D004784 ORTHO05D005762 4.8e-20 103.2 58 75.9
Actinidia15969 Actinidia chinensis HOM05D004784 ORTHO05D058202 1.8e-19 101.3 128 46.1
PGR042G0448 Punica granatum HOM05D006894 ORTHO05D008724 9.6e-13 79.0 338 24.0
Lsat_1_v5_gn_9_118621 Lactuca sativa HOM05D006894 ORTHO05D008724 1.6e-12 78.2 363 24.2


User provided reference genes

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