Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g080320.4 Solanum lycopersicum HOM05D005787 ORTHO05D007011 7.6e-291 1003.0 484 100.0
PGSC0003DMG400002087 Solanum tuberosum HOM05D005787 ORTHO05D007011 1.8e-284 981.9 484 97.1
Sopen02g025020 Solanum pennellii HOM05D005787 ORTHO05D007011 2.4e-284 981.5 484 98.1
CAN.G569.24 Capsicum annuum HOM05D005787 ORTHO05D007011 3.4e-259 897.9 484 88.6
Nitab4.5_0003893g0010 Nicotiana tabacum HOM05D005787 ORTHO05D007011 7.2e-249 863.6 482 85.7
Peaxi162Scf00262g00038 Petunia axillaris HOM05D005787 ORTHO05D007011 9.1e-244 846.7 484 84.5
Dinv20032 Davidia involucrata HOM05D005787 ORTHO05D007011 2.5e-209 732.3 489 71.8
Oeu015733.1 Olea europaea HOM05D005787 ORTHO05D007011 3.2e-204 715.3 485 70.9
Cc09_g01960 Coffea canephora HOM05D005787 ORTHO05D007011 4.1e-204 714.9 485 69.7
TAR624G0905 Trochodendron aralioides HOM05D005787 ORTHO05D007011 3.1e-199 698.7 487 68.8
Thecc.06G217000 Theobroma cacao HOM05D005787 ORTHO05D007011 8.9e-199 697.2 458 73.1
Prupe.4G024200 Prunus persica HOM05D005787 ORTHO05D007011 1.7e-197 693.0 465 70.1
Atru.chr10.2171 Acer truncatum HOM05D005787 ORTHO05D007011 4.9e-197 691.4 481 68.6
Haze_06771 Corylus avellana HOM05D005787 ORTHO05D007011 4.1e-196 688.3 450 71.8
Ciclev10015055m.g Citrus clementina HOM05D005787 ORTHO05D007011 9.2e-196 687.2 480 68.1
QL05p074231 Quercus lobata HOM05D005787 ORTHO05D007011 9.2e-196 687.2 456 71.7
GSVIVG01012651001 Vitis vinifera HOM05D005787 ORTHO05D007011 2.7e-195 685.6 474 70.5
Actinidia11846 Actinidia chinensis HOM05D005787 ORTHO05D007011 4.6e-195 684.9 484 68.6
Manes.16G010400 Manihot esculenta HOM05D005787 ORTHO05D007011 6.0e-195 684.5 457 70.5
Potri.004G019100 Populus trichocarpa HOM05D005787 ORTHO05D007011 7.8e-195 684.1 472 69.1
Cpa.g.sc198.22 Carica papaya HOM05D005787 ORTHO05D007011 4.3e-193 678.3 477 67.9
Gohir.D05G171800 Gossypium hirsutum HOM05D005787 ORTHO05D007011 4.3e-193 678.3 462 71.0
Lj1C1227T21 Lonicera japonica HOM05D005787 ORTHO05D007011 5.6e-193 677.9 399 77.2
Gorai.009G176900 Gossypium raimondii HOM05D005787 ORTHO05D007011 9.5e-193 677.2 462 70.8
PGR042G0837 Punica granatum HOM05D005787 ORTHO05D007011 6.2e-192 674.5 478 66.3
Nn1g07089 Nelumbo nucifera HOM05D005787 ORTHO05D007011 1.4e-191 673.3 485 66.0
Migut.H01558 Erythranthe guttata HOM05D005787 ORTHO05D007011 1.8e-191 672.9 485 65.8
Phvul.006G151200 Phaseolus vulgaris HOM05D005787 ORTHO05D007011 1.8e-191 672.9 456 69.5
SalBow1G7047 Salvia bowleyana HOM05D005787 ORTHO05D007011 1.8e-191 672.9 485 66.0
FvH4_3g02480 Fragaria vesca HOM05D005787 ORTHO05D007011 2.3e-191 672.5 461 69.4
FAN25G2524 Fragaria x ananassa HOM05D005787 ORTHO05D007011 3.1e-191 672.2 461 69.0
THA.LOC104812988 Tarenaya hassleriana HOM05D005787 ORTHO05D007011 1.2e-190 670.2 458 70.1
vmacro15819 Vaccinium macrocarpon HOM05D005787 ORTHO05D007011 2.0e-190 669.5 486 66.7
VMungo0540G0861 Vigna mungo HOM05D005787 ORTHO05D007011 2.0e-190 669.5 454 69.8
Rhsim02G0110900 Rhododendron simsii HOM05D005787 ORTHO05D007011 3.4e-190 668.7 484 66.5
Medtr2g022770 Medicago truncatula HOM05D005787 ORTHO05D007011 4.4e-190 668.3 436 70.9
TPR.G7642 Trifolium pratense HOM05D005787 ORTHO05D007011 1.7e-189 666.4 435 70.8
Gohir.A05G168600 Gossypium hirsutum HOM05D005787 ORTHO05D007011 6.4e-189 664.5 473 68.7
Sabra04G0010700 Salix brachista HOM05D005787 ORTHO05D007011 1.1e-188 663.7 393 76.1
Glyma.15G106100 Glycine max HOM05D005787 ORTHO05D007011 1.9e-188 662.9 449 70.2
PSO541G2671 Papaver somniferum HOM05D005787 ORTHO05D007011 2.4e-188 662.5 478 65.9
Glyma.13G206600 Glycine max HOM05D005787 ORTHO05D007011 4.1e-188 661.8 440 70.2
Eucgr.E04102 Eucalyptus grandis HOM05D005787 ORTHO05D007011 1.2e-187 660.2 413 74.6
Lj6g0006260 Lotus japonicus HOM05D005787 ORTHO05D007011 2.7e-187 659.1 455 69.0
CSS0006555 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 7.8e-187 657.5 496 65.1
Psat1g182520 Pisum sativum HOM05D005787 ORTHO05D007011 7.8e-187 657.5 413 72.6
CANSAT56G2549 Cannabis sativa HOM05D005787 ORTHO05D007011 1.7e-186 656.4 422 72.3
RcHm_v2.0_Chr5g0003731 Rosa chinensis HOM05D005787 ORTHO05D007011 2.3e-186 656.0 458 67.9
MD10G1317600 Malus domestica HOM05D005787 ORTHO05D007011 3.9e-186 655.2 393 75.8
Ca_00626_v3 Cicer arietinum L. HOM05D005787 ORTHO05D007011 1.5e-185 653.3 413 71.4
Lalb_Chr18g0056211 Lupinus albus HOM05D005787 ORTHO05D007011 1.9e-185 652.9 441 70.3
Lj6g0025395 Lotus japonicus HOM05D005787 ORTHO05D007011 1.6e-184 649.8 407 73.0
CsaV3_1G010950 Cucumis sativus L. HOM05D005787 ORTHO05D007011 2.1e-184 649.4 452 67.5
Aqoxy1G03304 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 4.7e-184 648.3 474 66.7
Aa31LG6G3750 Aethionema arabicum HOM05D005787 ORTHO05D007011 2.4e-183 646.0 471 66.0
arahy.Tifrunner.gnm1.ann1.J4BAYR Arachis hypogaea HOM05D005787 ORTHO05D007011 2.0e-182 642.9 457 67.0
Sed0015393 Sechium edule HOM05D005787 ORTHO05D007011 5.8e-182 641.3 429 70.6
SGA_v2.0_scaffold89G27454 Striga asiatica HOM05D005787 ORTHO05D007011 7.6e-182 641.0 481 64.7
arahy.Tifrunner.gnm1.ann1.N0U7LY Arachis hypogaea HOM05D005787 ORTHO05D007011 2.9e-181 639.0 458 66.4
ClCG03G004890 Citrullus lanatus HOM05D005787 ORTHO05D007011 4.9e-181 638.3 474 66.0
EL10Ac8g20016 Beta vulgaris HOM05D005787 ORTHO05D007011 1.1e-180 637.1 448 66.7
BcaNung02245 Brassica carinata HOM05D005787 ORTHO05D007011 4.1e-180 635.2 474 65.8
Lalb_Chr18g0056221 Lupinus albus HOM05D005787 ORTHO05D007011 1.2e-179 633.6 414 71.3
BcaC09g51204 Brassica carinata HOM05D005787 ORTHO05D007011 2.7e-179 632.5 472 65.7
A01p13100 Brassica napus HOM05D005787 ORTHO05D007011 6.0e-179 631.3 474 65.6
Psat0s341g0040 Pisum sativum HOM05D005787 ORTHO05D007011 6.0e-179 631.3 416 70.0
C01p15790 Brassica napus HOM05D005787 ORTHO05D007011 7.8e-179 630.9 474 65.6
BolC1t01532H Brassica oleracea HOM05D005787 ORTHO05D007011 7.8e-179 630.9 474 65.6
AT4G21770 Arabidopsis thaliana HOM05D005787 ORTHO05D007011 1.3e-178 630.2 476 65.3
CARHR228510 Cardamine hirsuta HOM05D005787 ORTHO05D007011 1.3e-178 630.2 479 65.3
Sp7g19940 Schrenkiella parvula HOM05D005787 ORTHO05D007011 3.9e-178 628.6 476 64.9
AL7G32160 Arabidopsis lyrata HOM05D005787 ORTHO05D007011 6.6e-178 627.9 478 65.1
Medtr7g113450 Medicago truncatula HOM05D005787 ORTHO05D007011 6.6e-178 627.9 417 69.1
Lsat_1_v5_gn_1_122000 Lactuca sativa HOM05D005787 ORTHO05D007011 1.9e-177 626.3 484 62.4
BraA01t01253Z Brassica rapa HOM05D005787 ORTHO05D007011 2.5e-177 625.9 474 64.8
HanXRQChr01g0003621 Helianthus annuus HOM05D005787 ORTHO05D007011 4.3e-177 625.2 413 68.5
CsaV3_1G010930 Cucumis sativus L. HOM05D005787 ORTHO05D007011 5.6e-177 624.8 460 65.9
Thhalv10025093m.g Eutrema salsugineum HOM05D005787 ORTHO05D007011 5.6e-177 624.8 477 64.4
Hund21387 Selenicereus undatus HOM05D005787 ORTHO05D007011 2.8e-176 622.5 421 67.2
TPR.G33224 Trifolium pratense HOM05D005787 ORTHO05D007011 2.8e-176 622.5 432 67.6
AUR62012669 Chenopodium quinoa HOM05D005787 ORTHO05D007011 4.7e-176 621.7 472 62.7
AUR62021985 Chenopodium quinoa HOM05D005787 ORTHO05D007011 4.7e-176 621.7 467 62.5
ECA248G2950 Erigeron canadensis HOM05D005787 ORTHO05D007011 1.1e-175 620.5 444 65.5
Carub.0007s1963 Capsella rubella HOM05D005787 ORTHO05D007011 2.2e-173 612.8 394 72.6
HanXRQChr05g0138101 Helianthus annuus HOM05D005787 ORTHO05D007011 1.6e-171 606.7 468 60.9
ATR0752G095 Amborella trichopoda HOM05D005787 ORTHO05D007011 3.5e-171 605.5 472 60.8
AUR62012670 Chenopodium quinoa HOM05D005787 ORTHO05D007011 1.3e-168 597.0 397 68.3
DCAR_024937 Daucus carota HOM05D005787 ORTHO05D007011 5.3e-167 591.7 358 75.4
Ah.09g235150 Amaranthus hybridus HOM05D005787 ORTHO05D007011 5.8e-166 588.2 429 65.0
Hund21388 Selenicereus undatus HOM05D005787 ORTHO05D007011 4.2e-164 582.0 384 67.7
Ah.09g235140 Amaranthus hybridus HOM05D005787 ORTHO05D007011 7.1e-164 581.3 504 56.7
Lsat_1_v5_gn_1_128660 Lactuca sativa HOM05D005787 ORTHO05D007011 1.2e-163 580.5 477 60.6
AUR62021984 Chenopodium quinoa HOM05D005787 ORTHO05D007011 1.8e-162 576.6 491 57.0
MELO3C002471.2 Cucumis melo HOM05D005787 ORTHO05D007011 6.7e-162 574.7 428 65.9
MD10G1317000 Malus domestica HOM05D005787 ORTHO05D007011 1.1e-161 573.9 428 64.0
Zm00001eb110780 Zea mays HOM05D005787 ORTHO05D007011 1.6e-160 570.1 475 57.3
MELO3C002473.2 Cucumis melo HOM05D005787 ORTHO05D007011 3.7e-160 568.9 355 74.4
unitig_0.g957 Utricularia gibba HOM05D005787 ORTHO05D007011 1.4e-159 567.0 357 72.3
EL10Ac8g20017 Beta vulgaris HOM05D005787 ORTHO05D007011 6.9e-159 564.7 413 64.4
MBI02_g15259_MAGBIO Magnolia biondii HOM05D005787 ORTHO05D007011 2.4e-156 556.2 475 60.0
HPP92_013307 Vanilla planifolia HOM05D005787 ORTHO05D007011 2.7e-155 552.7 353 68.6
CiPaw.09G089100 Carya illinoinensis HOM05D005787 ORTHO05D007011 2.9e-149 532.7 365 70.4
CiPaw.10G069200 Carya illinoinensis HOM05D005787 ORTHO05D007011 9.3e-148 527.7 397 64.2
Sc05g0009040 Simmondsia chinensis HOM05D005787 ORTHO05D007011 1.6e-144 516.9 394 64.5
ECA248G3226 Erigeron canadensis HOM05D005787 ORTHO05D007011 1.1e-140 504.2 413 58.8
Aqoxy92s001 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 7.0e-127 458.4 439 54.9
Pp3c5_11180 Physcomitrium patens HOM05D005787 ORTHO05D007011 7.0e-127 458.4 400 54.2
Mapoly0067s0098 Marchantia polymorpha HOM05D005787 ORTHO05D007011 1.4e-122 444.1 429 51.0
Mapoly0146s0040 Marchantia polymorpha HOM05D005787 ORTHO05D007011 1.8e-122 443.7 409 50.6
CSS0044707 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 2.8e-120 436.4 310 69.7
CANSAT64G1034 Cannabis sativa HOM05D005787 ORTHO05D007011 2.0e-113 413.7 259 75.3
SMO200G0166 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 2.0e-113 413.7 404 48.8
SMO200G0270 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 6.3e-112 408.7 435 47.6
DCAR_029795 Daucus carota HOM05D005787 ORTHO05D007011 1.2e-102 377.9 305 63.3
SEGI_04414 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 1.5e-89 334.3 244 61.9
CDE11G0095 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 3.5e-70 270.0 206 64.6
CDE11G0446 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 8.6e-69 265.4 185 60.5
AagrBONN_evm.TU.Sc2ySwM_228.3336 Anthoceros agrestis HOM05D005787 ORTHO05D007011 1.1e-68 265.0 219 57.1
MSTRG.13153 Avicennia marina HOM05D005787 ORTHO05D007011 2.5e-68 263.8 161 72.0
RcHm_v2.0_Chr5g0003761 Rosa chinensis HOM05D005787 ORTHO05D007011 2.9e-64 250.4 220 59.1
SEGI_19902 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 6.2e-59 232.6 162 64.8
DCAR_029794 Daucus carota HOM05D005787 ORTHO05D007011 9.6e-52 208.8 130 69.2
Hma1.2p1_3055F.1_g332150 Hydrangea macrophylla HOM05D005787 ORTHO05D007011 7.9e-46 189.1 129 64.3
Cre11.g474850 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 9.0e-34 149.1 481 27.9
MCO11G946 Micromonas commoda HOM05D005787 ORTHO05D007011 2.1e-30 137.9 384 29.4
BcaC05g26802 Brassica carinata HOM05D005787 ORTHO05D007011 2.5e-28 131.0 86 74.4
MCO10G204 Micromonas commoda HOM05D005787 ORTHO05D007011 4.6e-22 110.2 346 26.9
PRCOL_00006623 Prasinoderma coloniale HOM05D005787 ORTHO05D007011 9.7e-20 102.4 361 29.4
A09p39340 Brassica napus HOM05D005787 ORTHO05D007011 1.0e-13 82.4 54 75.9
A01p18320 Brassica napus HOM05D005787 ORTHO05D007011 6.7e-13 79.7 80 58.8
Cre10.g462600 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 2.8e-11 74.3 107 40.2
Cre10.g462500 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 1.5e-09 68.6 166 33.1
QL05p074297 Quercus lobata HOM05D000001 ORTHO05D007011 7.7e-09 66.2 55 52.7
C01p29500 Brassica napus HOM05D005787 ORTHO05D042539 2.9e-08 64.3 61 52.5
BolC1t02892H Brassica oleracea HOM05D005787 ORTHO05D042539 2.9e-08 64.3 61 52.5
Os07g0660400 Oryza sativa ssp. japonica HOM05D005787 ORTHO05D007011 1.2e-06 58.9 98 37.8


User provided reference genes

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