Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g078830.4 Solanum lycopersicum HOM05D004841 ORTHO05D005874 6.0e-197 690.6 349 100.0
Sopen02g023650 Solanum pennellii HOM05D004841 ORTHO05D005874 2.1e-189 665.6 338 99.1
PGSC0003DMG400022420 Solanum tuberosum HOM05D004841 ORTHO05D005874 3.0e-188 661.8 338 98.2
Nitab4.5_0000501g0020 Nicotiana tabacum HOM05D004841 ORTHO05D005874 9.6e-171 603.6 342 87.4
Nitab4.5_0004020g0010 Nicotiana tabacum HOM05D004841 ORTHO05D005874 3.7e-170 601.7 338 88.2
Peaxi162Scf00465g00119 Petunia axillaris HOM05D004841 ORTHO05D005874 6.7e-156 554.3 338 82.8
MSTRG.7507 Avicennia marina HOM05D004841 ORTHO05D005874 2.4e-137 492.7 338 72.2
Hma1.2p1_0594F.1_g185890 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 2.7e-136 489.2 339 71.1
CSS0019612 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 5.9e-136 488.0 340 71.5
CSS0027900 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 5.9e-136 488.0 340 71.5
GSVIVG01034157001 Vitis vinifera HOM05D004841 ORTHO05D005874 3.2e-134 482.3 331 70.1
Cc02_g29720 Coffea canephora HOM05D004841 ORTHO05D005874 6.1e-133 478.0 341 71.3
Oeu013128.1 Olea europaea HOM05D004841 ORTHO05D005874 1.3e-130 470.3 339 70.8
Rhsim13G0116700 Rhododendron simsii HOM05D004841 ORTHO05D005874 2.8e-130 469.2 341 69.2
Sed0021741 Sechium edule HOM05D004841 ORTHO05D005874 1.4e-129 466.8 332 70.2
Manes.17G073300 Manihot esculenta HOM05D004841 ORTHO05D005874 2.4e-129 466.1 341 68.0
Migut.M00886 Erythranthe guttata HOM05D004841 ORTHO05D005874 5.4e-129 464.9 334 69.5
vmacro03353 Vaccinium macrocarpon HOM05D004841 ORTHO05D005874 1.3e-127 460.3 340 67.9
Lsat_1_v5_gn_4_29561 Lactuca sativa HOM05D004841 ORTHO05D005874 1.7e-127 459.9 339 68.4
SGA_v2.0_scaffold146G36131 Striga asiatica HOM05D004841 ORTHO05D005874 5.0e-127 458.4 315 71.1
Lj2A321T65 Lonicera japonica HOM05D004841 ORTHO05D005874 1.5e-126 456.8 318 71.1
Dinv21532 Davidia involucrata HOM05D004841 ORTHO05D005874 2.5e-126 456.1 331 68.9
CANSAT11G1247 Cannabis sativa HOM05D004841 ORTHO05D005874 7.2e-126 454.5 333 66.7
DCAR_027897 Daucus carota HOM05D004841 ORTHO05D005874 4.7e-125 451.8 337 69.1
Atru.chr10.1099 Acer truncatum HOM05D004841 ORTHO05D005874 6.1e-125 451.4 337 66.5
Prupe.4G084200 Prunus persica HOM05D004841 ORTHO05D005874 8.0e-125 451.1 340 65.6
MD05G1280700 Malus domestica HOM05D004841 ORTHO05D005874 4.0e-124 448.7 326 68.1
Eucgr.E02427 Eucalyptus grandis HOM05D004841 ORTHO05D005874 1.5e-123 446.8 339 66.1
TAR628G1076 Trochodendron aralioides HOM05D004841 ORTHO05D005874 4.4e-123 445.3 332 67.2
HanXRQChr17g0564621 Helianthus annuus HOM05D004841 ORTHO05D005874 5.7e-123 444.9 339 66.4
MELO3C007114.2 Cucumis melo HOM05D004841 ORTHO05D005874 7.5e-123 444.5 334 66.8
Potri.012G107400 Populus trichocarpa HOM05D004841 ORTHO05D005874 9.8e-123 444.1 326 68.4
CsaV3_6G051930 Cucumis sativus L. HOM05D004841 ORTHO05D005874 2.2e-122 443.0 334 66.8
PGR031G1170 Punica granatum HOM05D004841 ORTHO05D005874 6.3e-122 441.4 345 64.1
MD10G1259100 Malus domestica HOM05D004841 ORTHO05D005874 1.1e-121 440.7 328 65.9
Ciclev10015824m.g Citrus clementina HOM05D004841 ORTHO05D005874 7.0e-121 438.0 344 63.1
ECA234G4271 Erigeron canadensis HOM05D004841 ORTHO05D005874 5.9e-120 434.9 337 65.6
TWI63G0939 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 5.9e-120 434.9 328 65.2
Nn3g20436 Nelumbo nucifera HOM05D004841 ORTHO05D005874 1.3e-119 433.7 323 65.6
Sc02g0001540 Simmondsia chinensis HOM05D004841 ORTHO05D005874 1.3e-119 433.7 321 67.0
Sabra13G0019700 Salix brachista HOM05D000092 ORTHO05D005874 1.7e-119 433.3 319 67.1
CiPaw.10G089600 Carya illinoinensis HOM05D004841 ORTHO05D005874 8.6e-119 431.0 339 64.0
Actinidia01573 Actinidia chinensis HOM05D004841 ORTHO05D005874 2.5e-118 429.5 338 64.8
Duzib235G0160 Durio zibethinus HOM05D004841 ORTHO05D005874 3.3e-118 429.1 340 63.2
RcHm_v2.0_Chr5g0014571 Rosa chinensis HOM05D004841 ORTHO05D005874 4.3e-118 428.7 328 65.2
BraA07t31032Z Brassica rapa HOM05D004841 ORTHO05D005874 7.3e-118 427.9 342 62.6
FvH4_3g05180 Fragaria vesca HOM05D004841 ORTHO05D005874 7.3e-118 427.9 341 63.0
FAN11G3214 Fragaria x ananassa HOM05D004841 ORTHO05D005874 9.5e-118 427.6 341 62.8
FAN25G3271 Fragaria x ananassa HOM05D004841 ORTHO05D005874 9.5e-118 427.6 341 62.8
BcaB05g24290 Brassica carinata HOM05D004841 ORTHO05D005874 1.2e-117 427.2 345 61.7
CiPaw.09G120900 Carya illinoinensis HOM05D004841 ORTHO05D005874 1.2e-117 427.2 341 64.2
FAN21G1690 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.6e-117 426.8 341 62.5
Gohir.D10G043800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 1.6e-117 426.8 340 62.1
A02p14280 Brassica napus HOM05D004841 ORTHO05D005874 2.1e-117 426.4 347 62.0
A07p34060 Brassica napus HOM05D004841 ORTHO05D005874 2.8e-117 426.0 342 62.3
Lalb_Chr11g0073321 Lupinus albus HOM05D004841 ORTHO05D005874 2.8e-117 426.0 331 64.4
THA.LOC104821761 Tarenaya hassleriana HOM05D004841 ORTHO05D005874 2.8e-117 426.0 346 60.7
AL2G19660 Arabidopsis lyrata HOM05D004841 ORTHO05D005874 3.6e-117 425.6 346 63.3
AT1G65030 Arabidopsis thaliana HOM05D004841 ORTHO05D005874 6.1e-117 424.9 331 65.0
C06p42730 Brassica napus HOM05D004841 ORTHO05D005874 6.1e-117 424.9 342 62.3
BraA02t06489Z Brassica rapa HOM05D004841 ORTHO05D005874 6.1e-117 424.9 345 61.7
FAN16G1445 Fragaria x ananassa HOM05D004841 ORTHO05D005874 8.0e-117 424.5 341 62.2
FAN16G2733 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.0e-116 424.1 326 64.4
TWI34G1122 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 1.0e-116 424.1 328 63.4
COL.COLO4_31030 Corchorus olitorius HOM05D004841 ORTHO05D005874 1.4e-116 423.7 340 62.9
Gorai.011G046600 Gossypium raimondii HOM05D004841 ORTHO05D005874 1.8e-116 423.3 329 62.6
Sp5g22530 Schrenkiella parvula HOM05D004841 ORTHO05D005874 1.8e-116 423.3 345 62.0
BcaB03g15189 Brassica carinata HOM05D004841 ORTHO05D005874 4.0e-116 422.2 331 63.4
C06p42780 Brassica napus HOM05D004841 ORTHO05D005874 5.2e-116 421.8 342 62.3
MBI02_g29870_MAGBIO Magnolia biondii HOM05D004841 ORTHO05D005874 6.8e-116 421.4 329 63.8
Thecc.06G146500 Theobroma cacao HOM05D004841 ORTHO05D005874 6.8e-116 421.4 337 62.6
Carub.0002s1024 Capsella rubella HOM05D004841 ORTHO05D005874 1.5e-115 420.2 347 61.7
Thhalv10018816m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 1.5e-115 420.2 331 63.7
BolC2t08451H Brassica oleracea HOM05D004841 ORTHO05D005874 2.0e-115 419.9 345 62.6
ClCG01G024810 Citrullus lanatus HOM05D004841 ORTHO05D005874 2.0e-115 419.9 333 66.4
PSO541G1633 Papaver somniferum HOM05D004841 ORTHO05D005874 2.0e-115 419.9 329 62.0
PSO675G7289 Papaver somniferum HOM05D004841 ORTHO05D005874 2.0e-115 419.9 329 62.0
C02p23090 Brassica napus HOM05D004841 ORTHO05D005874 2.6e-115 419.5 345 62.6
QL05p055481 Quercus lobata HOM05D004841 ORTHO05D005874 3.4e-115 419.1 342 62.9
Gohir.A10G042800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 4.4e-115 418.7 340 61.2
Aa31LG2G2230 Aethionema arabicum HOM05D004841 ORTHO05D005874 5.7e-115 418.3 329 62.6
Cfa000914 Carpinus fangiana HOM05D004841 ORTHO05D005874 7.5e-115 417.9 339 62.5
arahy.Tifrunner.gnm1.ann1.4L8DWS Arachis hypogaea HOM05D004841 ORTHO05D005874 4.9e-114 415.2 331 62.5
Ah.08g211520 Amaranthus hybridus HOM05D004841 ORTHO05D005874 8.3e-114 414.5 328 62.5
arahy.Tifrunner.gnm1.ann1.0DR3QG Arachis hypogaea HOM05D004841 ORTHO05D005874 1.8e-113 413.3 334 61.1
EL10Ac7g16662 Beta vulgaris HOM05D004841 ORTHO05D005874 1.8e-113 413.3 331 61.9
Haze_05641 Corylus avellana HOM05D004841 ORTHO05D005874 4.1e-113 412.1 343 62.4
BolC6t39162H Brassica oleracea HOM05D004841 ORTHO05D005874 7.0e-113 411.4 371 57.7
arahy.Tifrunner.gnm1.ann1.9IA9LY Arachis hypogaea HOM05D004841 ORTHO05D005874 2.7e-112 409.5 316 63.3
Psat1g020080 Pisum sativum HOM05D004841 ORTHO05D005874 4.6e-112 408.7 328 62.8
TPR.G29935 Trifolium pratense HOM05D004841 ORTHO05D005874 1.0e-111 407.5 333 61.6
CARHR056500 Cardamine hirsuta HOM05D004841 ORTHO05D005874 3.9e-111 405.6 345 59.1
PSO017G5522 Papaver somniferum HOM05D004841 ORTHO05D005874 3.9e-111 405.6 321 62.6
arahy.Tifrunner.gnm1.ann1.V1DCF9 Arachis hypogaea HOM05D004841 ORTHO05D005874 5.0e-111 405.2 316 63.3
Ca_03447_v3 Cicer arietinum L. HOM05D004841 ORTHO05D005874 6.6e-111 404.8 332 61.4
Dinv32222 Davidia involucrata HOM05D004841 ORTHO05D005874 1.5e-110 403.7 260 74.2
Medtr2g049300 Medicago truncatula HOM05D004841 ORTHO05D005874 3.6e-109 399.1 328 61.0
Hund20587 Selenicereus undatus HOM05D004841 ORTHO05D005874 6.2e-109 398.3 335 61.5
Aqoxy5G03944 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 2.0e-107 393.3 318 59.4
SalBow8G2637 Salvia bowleyana HOM05D004841 ORTHO05D005874 2.0e-107 393.3 322 64.0
Aqoxy7G03441 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 2.2e-106 389.8 315 59.4
BcaNung05075 Brassica carinata HOM05D004841 ORTHO05D005874 2.9e-106 389.4 331 60.4
Glyma.09G086200 Glycine max HOM05D004841 ORTHO05D005874 5.4e-105 385.2 326 59.5
Glyma.15G195000 Glycine max HOM05D004841 ORTHO05D005874 1.2e-104 384.0 329 59.6
Lj6g0003285 Lotus japonicus HOM05D004841 ORTHO05D005874 2.0e-104 383.3 339 57.2
Phvul.009G215400 Phaseolus vulgaris HOM05D004841 ORTHO05D005874 1.2e-101 374.0 316 59.5
HPP92_012189 Vanilla planifolia HOM05D004841 ORTHO05D005874 1.1e-100 370.9 318 58.5
VMungo1309G2918 Vigna mungo HOM05D004841 ORTHO05D005874 3.1e-100 369.4 341 56.0
SHI02861 Sapria himalayana HOM05D004841 ORTHO05D005874 2.4e-97 359.8 286 62.2
AUR62026924 Chenopodium quinoa HOM05D004841 ORTHO05D005874 1.1e-92 344.4 252 65.9
ATR0772G214 Amborella trichopoda HOM05D004841 ORTHO05D005874 6.9e-84 315.1 325 48.9
Zm00001eb328580 Zea mays HOM05D004841 ORTHO05D005874 6.9e-84 315.1 330 49.4
SEGI_08519 Sequoiadendron giganteum HOM05D004841 ORTHO05D005874 4.2e-81 305.8 343 44.3
Mapoly0001s0498 Marchantia polymorpha HOM05D004841 ORTHO05D005874 4.3e-70 269.2 348 39.9
BcaNung05072 Brassica carinata HOM05D004841 ORTHO05D005874 1.1e-60 238.0 176 65.9
Os12g0615900 Oryza sativa ssp. japonica HOM05D004841 ORTHO05D005874 2.4e-60 236.9 227 52.9
CDE07G1158 Ceratophyllum demersum HOM05D004841 ORTHO05D005874 4.0e-60 236.1 223 54.7
BcaNung05071 Brassica carinata HOM05D004841 ORTHO05D005874 3.4e-59 233.0 176 64.8
AUR62042056 Chenopodium quinoa HOM05D004841 ORTHO05D005874 1.0e-58 231.5 172 64.5
unitig_749.g13802 Utricularia gibba HOM05D004841 ORTHO05D005874 1.1e-57 228.0 178 65.2
SMO358G0291 Selaginella moellendorffii HOM05D004841 ORTHO05D005874 5.5e-57 225.7 316 40.5
Sabra13G0018400 Salix brachista HOM05D004841 ORTHO05D004358 2.6e-51 206.8 144 68.8
Cre03.g205800 Chlamydomonas reinhardtii HOM05D004841 ORTHO05D005874 1.0e-47 194.9 324 34.6
Oeu062572.1 Olea europaea HOM05D004841 ORTHO05D005874 3.1e-44 183.3 144 64.6
Cpa.g.sc17.34 Carica papaya HOM05D004841 ORTHO05D005874 2.2e-42 177.2 136 66.2
C06p41890 Brassica napus HOM05D004841 ORTHO05D005874 1.2e-35 154.8 121 61.2
Oeu030952.1 Olea europaea HOM05D004841 ORTHO05D005874 3.4e-35 153.3 180 50.0
unitig_749.g13803 Utricularia gibba HOM05D004841 ORTHO05D005874 1.0e-34 151.8 121 58.7
BolC6t39240H Brassica oleracea HOM05D004841 ORTHO05D005874 8.5e-34 148.7 118 61.0
Sabra13G0018300 Salix brachista HOM05D004841 ORTHO05D005874 1.1e-33 148.3 107 70.1
Hma1.2p1_0594F.1_g185900 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 1.9e-33 147.5 99 72.7
Sabra13G0014000 Salix brachista HOM05D000092 ORTHO05D000042 9.4e-33 145.2 165 50.9
Pp3c9_24890 Physcomitrium patens HOM05D004841 ORTHO05D005874 2.1e-32 144.1 211 39.8
CBR_g4467 Chara braunii HOM05D004841 ORTHO05D005874 6.1e-32 142.5 295 30.5
Sabra13G0015400 Salix brachista HOM05D004841 ORTHO05D005874 6.1e-32 142.5 98 69.4
Sabra13G0014300 Salix brachista HOM05D004841 ORTHO05D005874 1.0e-31 141.7 98 69.4
Sabra13G0014700 Salix brachista HOM05D000070 ORTHO05D000047 1.0e-31 141.7 98 69.4
MCO15G572 Micromonas commoda HOM05D004841 ORTHO05D005874 5.7e-30 136.0 340 27.9
Pp3c15_25070 Physcomitrium patens HOM05D004841 ORTHO05D005874 1.1e-28 131.7 171 41.5
ATR1098G095 Amborella trichopoda HOM05D004841 ORTHO05D005874 2.6e-27 127.1 164 40.2
Cpa.g.c47956 Carica papaya HOM05D004841 ORTHO05D005874 5.9e-27 125.9 99 57.6
Sabra13G0015100 Salix brachista HOM05D004841 ORTHO05D005874 5.5e-25 119.4 84 69.0
Sabra13G0019300 Salix brachista HOM05D004841 ORTHO05D005874 5.5e-25 119.4 84 69.0
AagrBONN_evm.TU.Sc2ySwM_117.2336 Anthoceros agrestis HOM05D004841 ORTHO05D005874 3.6e-24 116.7 176 35.8
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 5.2e-23 112.8 134 47.0
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 9.7e-22 108.6 120 50.8
Thhalv10019798m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 3.1e-20 103.6 132 47.0
VMungo0331G1481 Vigna mungo HOM05D004841 ORTHO05D005874 3.5e-19 100.1 113 45.1
VMungo1382G0002 Vigna mungo HOM05D004841 ORTHO05D005874 6.1e-16 89.4 99 48.5
Oeu030951.1 Olea europaea HOM05D004841 ORTHO05D005874 2.3e-15 87.4 124 45.2
Sabra13G0018600 Salix brachista HOM05D004841 ORTHO05D005874 1.4e-12 78.2 68 60.3
Actinidia16778 Actinidia chinensis HOM05D004841 ORTHO05D005874 1.2e-11 75.1 59 55.9
Nitab4.5_0006462g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.0e-10 72.0 47 76.6
BcaC03g14843 Brassica carinata HOM05D004841 ORTHO05D005874 1.6e-08 64.7 58 60.3
VMungo0712G0001 Vigna mungo HOM05D004841 ORTHO05D005874 2.3e-07 60.8 134 33.6
BcaC08g46242 Brassica carinata HOM05D004841 ORTHO05D005874 5.7e-06 56.2 40 60.0


User provided reference genes

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