Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g070880.1 Solanum lycopersicum HOM05D004468 ORTHO05D008180 1.9e-133 479.2 247 100.0
Sopen02g019960 Solanum pennellii HOM05D004468 ORTHO05D008180 1.9e-125 452.6 247 95.5
PGSC0003DMG400008295 Solanum tuberosum HOM05D004468 ORTHO05D008180 7.4e-117 424.1 247 91.5
CAN.G257.6 Capsicum annuum HOM05D004468 ORTHO05D008180 1.3e-108 396.7 247 84.2
Nitab4.5_0001040g0150 Nicotiana tabacum HOM05D004468 ORTHO05D008180 1.1e-104 383.6 245 82.4
Peaxi162Scf00291g00015 Petunia axillaris HOM05D004468 ORTHO05D008180 3.1e-99 365.5 244 79.9
Nitab4.5_0001655g0240 Nicotiana tabacum HOM05D004468 ORTHO05D008180 5.7e-77 291.6 246 68.7
Dinv05249 Davidia involucrata HOM05D004468 ORTHO05D008180 9.2e-67 257.7 244 59.4
Dinv33636 Davidia involucrata HOM05D004468 ORTHO05D008180 1.6e-66 256.9 244 59.4
Dinv30712 Davidia involucrata HOM05D004468 ORTHO05D008180 8.3e-60 234.6 242 56.2
Prupe.4G077100 Prunus persica HOM05D004468 ORTHO05D008180 8.3e-60 234.6 245 57.1
QL05p059278 Quercus lobata HOM05D004468 ORTHO05D008180 1.0e-57 227.6 221 57.9
MD05G1288800 Malus domestica HOM05D004468 ORTHO05D008180 7.3e-56 221.5 246 54.1
MD10G1264900 Malus domestica HOM05D004468 ORTHO05D008180 7.3e-56 221.5 245 55.1
Ciclev10016464m.g Citrus clementina HOM05D004468 ORTHO05D008180 2.1e-55 219.9 245 53.9
Cc09_g09510 Coffea canephora HOM05D004468 ORTHO05D008180 2.1e-55 219.9 247 55.1
Manes.15G119000 Manihot esculenta HOM05D004468 ORTHO05D008180 6.2e-55 218.4 244 54.1
CiPaw.09G126600 Carya illinoinensis HOM05D004468 ORTHO05D008180 1.8e-54 216.9 230 54.8
Potri.011G080000 Populus trichocarpa HOM05D004468 ORTHO05D008180 6.8e-54 214.9 218 57.8
Thecc.06G154000 Theobroma cacao HOM05D004468 ORTHO05D008180 5.8e-53 211.8 244 54.9
COL.COLO4_06070 Corchorus olitorius HOM05D004468 ORTHO05D008180 6.4e-52 208.4 244 52.9
Gohir.A10G039100 Gossypium hirsutum HOM05D004468 ORTHO05D008180 1.9e-51 206.8 244 53.7
Gorai.011G042000 Gossypium raimondii HOM05D004468 ORTHO05D008180 1.9e-51 206.8 244 53.3
Haze_05549 Corylus avellana HOM05D004468 ORTHO05D008180 1.0e-49 201.1 222 53.6
CiPaw.10G093500 Carya illinoinensis HOM05D004468 ORTHO05D008180 8.6e-49 198.0 246 54.1
Duzib160G0871 Durio zibethinus HOM05D004468 ORTHO05D008180 1.1e-48 197.6 244 52.0
Duzib192G0660 Durio zibethinus HOM05D004468 ORTHO05D008180 2.5e-48 196.4 244 54.5
MSTRG.14764 Avicennia marina HOM05D004468 ORTHO05D008180 3.3e-48 196.1 239 49.4
Oeu052384.1 Olea europaea HOM05D004468 ORTHO05D008180 9.6e-48 194.5 236 49.6
Cfa000973 Carpinus fangiana HOM05D004468 ORTHO05D008180 1.2e-47 194.1 221 52.0
Duzib235G1094 Durio zibethinus HOM05D004468 ORTHO05D008180 3.6e-47 192.6 244 53.7
SalBow6G4733 Salvia bowleyana HOM05D004468 ORTHO05D008180 3.6e-47 192.6 207 54.6
SalBow7G0317 Salvia bowleyana HOM05D004468 ORTHO05D008180 3.6e-47 192.6 207 54.6
RhsimUnG0149400 Rhododendron simsii HOM05D004468 ORTHO05D008180 4.7e-47 192.2 243 51.4
Atru.chr10.1342 Acer truncatum HOM05D004468 ORTHO05D008180 1.1e-46 191.0 248 50.8
Aqoxy1G01779 Aquilegia oxysepala HOM05D004468 ORTHO05D008180 1.8e-46 190.3 246 48.8
Sc17g0005060 Simmondsia chinensis HOM05D004468 ORTHO05D008180 2.4e-46 189.9 247 47.8
Hma1.2p1_0164F.1_g073090 Hydrangea macrophylla HOM05D004468 ORTHO05D008180 4.0e-46 189.1 247 50.2
Gohir.A05G150000 Gossypium hirsutum HOM05D004468 ORTHO05D008180 6.8e-46 188.3 243 48.1
Sabra11G0068700 Salix brachista HOM05D004468 ORTHO05D008180 1.5e-45 187.2 202 54.5
Sabra11G0070800 Salix brachista HOM05D004468 ORTHO05D008180 1.5e-45 187.2 202 54.5
Gorai.009G156700 Gossypium raimondii HOM05D004468 ORTHO05D008180 7.6e-45 184.9 244 49.2
TWI53G1884 Tripterygium wilfordii HOM05D004468 ORTHO05D008180 7.6e-45 184.9 216 52.8
vmacro10945 Vaccinium macrocarpon HOM05D004468 ORTHO05D008180 7.6e-45 184.9 210 54.3
Gohir.D05G152600 Gossypium hirsutum HOM05D004468 ORTHO05D008180 3.8e-44 182.6 244 48.8
Manes.17G067600 Manihot esculenta HOM05D004468 ORTHO05D008180 1.4e-43 180.6 243 47.3
MSTRG.13248 Avicennia marina HOM05D004468 ORTHO05D008180 3.2e-43 179.5 249 46.6
Hund21515 Selenicereus undatus HOM05D004468 ORTHO05D008180 6.0e-42 175.3 248 45.6
Glyma.05G129400 Glycine max HOM05D004468 ORTHO05D008180 2.3e-41 173.3 241 46.9
TAR629G0415 Trochodendron aralioides HOM05D004468 ORTHO05D008180 1.9e-40 170.2 244 47.1
FvH4_3g06000 Fragaria vesca HOM05D004468 ORTHO05D008180 2.5e-40 169.9 247 45.7
FAN11G2204 Fragaria x ananassa HOM05D004468 ORTHO05D008180 9.6e-40 167.9 246 45.5
Medtr4g096660 Medicago truncatula HOM05D004468 ORTHO05D008180 9.6e-40 167.9 202 52.0
THA.LOC104820641 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 2.1e-39 166.8 253 45.1
CsaV3_6G051560 Cucumis sativus L. HOM05D004468 ORTHO05D008180 1.8e-38 163.7 226 48.7
RcHm_v2.0_Chr5g0013411 Rosa chinensis HOM05D004468 ORTHO05D008180 1.8e-38 163.7 249 44.6
TPR.G4895 Trifolium pratense HOM05D004468 ORTHO05D008180 2.4e-38 163.3 244 45.1
MD05G1288000 Malus domestica HOM05D004468 ORTHO05D008180 4.0e-38 162.5 216 47.7
Phvul.002G194400 Phaseolus vulgaris HOM05D004468 ORTHO05D008180 9.0e-38 161.4 243 44.0
Migut.H01376 Erythranthe guttata HOM05D004468 ORTHO05D008180 1.2e-37 161.0 242 43.8
Ca_18271_v3 Cicer arietinum L. HOM05D004468 ORTHO05D008180 3.4e-37 159.5 243 45.7
Lalb_Chr13g0291991 Lupinus albus HOM05D004468 ORTHO05D008180 3.4e-37 159.5 210 50.5
MD05G1288300 Malus domestica HOM05D004468 ORTHO05D008180 7.6e-37 158.3 216 47.2
FAN21G2255 Fragaria x ananassa HOM05D004468 ORTHO05D008180 9.9e-37 157.9 246 43.5
FAN16G0098 Fragaria x ananassa HOM05D004468 ORTHO05D008180 1.3e-36 157.5 246 43.9
FAN25G3280 Fragaria x ananassa HOM05D004468 ORTHO05D008180 1.7e-36 157.1 246 43.5
Sed0007839 Sechium edule HOM05D004468 ORTHO05D008180 6.4e-36 155.2 221 45.2
Psat7g090880 Pisum sativum HOM05D004468 ORTHO05D008180 1.4e-35 154.1 204 46.1
Nn4g26508 Nelumbo nucifera HOM05D004468 ORTHO05D008180 4.2e-35 152.5 222 44.6
arahy.Tifrunner.gnm1.ann1.2E3FWC Arachis hypogaea HOM05D004468 ORTHO05D008180 5.4e-35 152.1 217 45.6
VMungo0251G1661 Vigna mungo HOM05D004468 ORTHO05D008180 5.4e-35 152.1 242 44.2
Glyma.08G084100 Glycine max HOM05D004468 ORTHO05D008180 9.3e-35 151.4 214 45.3
Sed0014650 Sechium edule HOM05D004468 ORTHO05D008180 3.5e-34 149.4 210 47.1
Oeu040960.2 Olea europaea HOM05D004468 ORTHO05D008180 6.0e-34 148.7 206 44.7
PSO541G2725 Papaver somniferum HOM05D004468 ORTHO05D008180 6.0e-34 148.7 193 48.7
Gohir.D10G039900 Gossypium hirsutum HOM05D004468 ORTHO05D008180 3.9e-33 146.0 244 45.5
Lj4g0016525 Lotus japonicus HOM05D004468 ORTHO05D008180 3.9e-33 146.0 212 46.2
PSO675G1482 Papaver somniferum HOM05D004468 ORTHO05D008180 8.7e-33 144.8 193 48.2
Lj1P1184T76 Lonicera japonica HOM05D004468 ORTHO05D008180 1.3e-31 141.0 217 45.6
CANSAT35G0919 Cannabis sativa HOM05D004468 ORTHO05D008180 3.6e-31 139.4 249 43.4
RhsimUnG0174800 Rhododendron simsii HOM05D004468 ORTHO05D008180 2.4e-30 136.7 226 45.1
THA.LOC104812665 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 3.1e-30 136.3 246 40.7
Sp1g25810 Schrenkiella parvula HOM05D004468 ORTHO05D008180 5.3e-30 135.6 260 39.6
Actinidia39559 Actinidia chinensis HOM05D004468 ORTHO05D008180 5.8e-29 132.1 243 40.7
Thhalv10009888m.g Eutrema salsugineum HOM05D004468 ORTHO05D008180 1.7e-28 130.6 228 42.5
Actinidia07680 Actinidia chinensis HOM05D004468 ORTHO05D011136 2.2e-28 130.2 212 45.8
BcaB03g13850 Brassica carinata HOM05D004468 ORTHO05D008180 1.1e-27 127.9 256 39.5
CDE02G0697 Ceratophyllum demersum HOM05D004468 ORTHO05D008180 4.2e-27 125.9 204 40.7
Dinv32278 Davidia involucrata HOM05D004468 ORTHO05D011136 2.1e-26 123.6 133 50.4
AL1G43790 Arabidopsis lyrata HOM05D004468 ORTHO05D008180 4.6e-26 122.5 262 39.3
unitig_8.g4884 Utricularia gibba HOM05D004468 ORTHO05D008180 4.6e-26 122.5 198 39.9
Lsat_1_v5_gn_1_96101 Lactuca sativa HOM05D004468 ORTHO05D008180 6.7e-25 118.6 200 44.0
Nn3g20652 Nelumbo nucifera HOM05D004468 ORTHO05D008180 8.7e-25 118.2 167 45.5
Os02g0315600 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 2.5e-24 116.7 199 39.2
C07p15630 Brassica napus HOM05D004468 ORTHO05D008180 3.3e-24 116.3 260 38.5
Os01g0626900 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 4.8e-23 112.5 215 39.1
QL05p059480 Quercus lobata HOM05D004468 ORTHO05D008180 4.8e-23 112.5 127 55.1
Os03g0591300 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 2.4e-22 110.2 201 41.3
BcaC06g35475 Brassica carinata HOM05D004468 ORTHO05D008180 3.1e-22 109.8 261 38.3
A08p24790 Brassica napus HOM05D004468 ORTHO05D008180 3.1e-22 109.8 263 39.2
BolC7t42051H Brassica oleracea HOM05D004468 ORTHO05D008180 3.1e-22 109.8 261 38.3
BraA08t34433Z Brassica rapa HOM05D004468 ORTHO05D008180 3.1e-22 109.8 263 39.2
BcaC01g00145 Brassica carinata HOM05D004468 ORTHO05D008180 4.5e-21 105.9 263 38.4
Zm00001eb384990 Zea mays HOM05D004468 ORTHO05D008180 7.6e-21 105.1 203 39.4
C03p76270 Brassica napus HOM05D004468 ORTHO05D008180 1.3e-20 104.4 260 37.7
BolC3t19884H Brassica oleracea HOM05D004468 ORTHO05D008180 1.3e-20 104.4 260 37.7
BcaB03g12186 Brassica carinata HOM05D004468 ORTHO05D008180 1.1e-19 101.3 261 36.4
THA.LOC104814285 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 1.9e-19 100.5 219 35.6
MD05G1288500 Malus domestica HOM05D004468 ORTHO05D008180 4.2e-19 99.4 109 57.8
Carub.0001s2818 Capsella rubella HOM05D004468 ORTHO05D008180 6.0e-18 95.5 280 33.6
Lsat_1_v5_gn_7_32861 Lactuca sativa HOM05D004468 ORTHO05D008180 3.9e-17 92.8 191 39.3
CARHR029490 Cardamine hirsuta HOM05D004468 ORTHO05D008180 1.5e-16 90.9 216 35.2
AT1G29950 Arabidopsis thaliana HOM05D004468 ORTHO05D008180 3.3e-16 89.7 265 33.2
HanXRQChr04g0118301 Helianthus annuus HOM05D004468 ORTHO05D008180 1.4e-14 84.3 204 36.3
A07p10110 Brassica napus HOM05D004468 ORTHO05D008180 2.4e-14 83.6 252 33.3
Eucgr.D00317 Eucalyptus grandis HOM05D004468 ORTHO05D008180 2.4e-14 83.6 239 31.8
ECA236G0629 Erigeron canadensis HOM05D004468 ORTHO05D011136 4.1e-14 82.8 173 39.9
MELO3C007151.2 Cucumis melo HOM05D004468 ORTHO05D008180 4.5e-13 79.3 224 34.4
Zm00001eb278170 Zea mays HOM05D004468 ORTHO05D008180 2.9e-12 76.6 208 33.2
Zm00001eb277350 Zea mays HOM05D004468 ORTHO05D008180 3.2e-11 73.2 186 34.4
BraA07t28804Z Brassica rapa HOM05D004468 ORTHO05D008180 5.5e-11 72.4 231 30.7
HanXRQChr12g0382221 Helianthus annuus HOM05D004468 ORTHO05D008180 4.6e-10 69.3 111 44.1
CDE08G0998 Ceratophyllum demersum HOM05D004468 ORTHO05D011136 1.0e-09 68.2 136 38.2
ECA246G0388 Erigeron canadensis HOM05D001755 ORTHO05D001665 8.7e-09 65.1 292 24.3
HanXRQChr05g0163561 Helianthus annuus HOM05D001755 ORTHO05D001665 4.3e-08 62.8 230 24.8
BolC7t42047H Brassica oleracea HOM05D004468 ORTHO05D008180 1.6e-07 60.8 77 42.9
C07p15610 Brassica napus HOM05D004468 ORTHO05D008180 6.3e-07 58.9 146 34.2
Migut.L01931 Erythranthe guttata HOM05D001755 ORTHO05D001665 1.1e-06 58.2 203 24.1
Sc26g0000240 Simmondsia chinensis HOM05D001755 ORTHO05D001665 1.1e-06 58.2 216 27.3
BcaC06g35479 Brassica carinata HOM05D000171 ORTHO05D008180 2.4e-06 57.0 52 50.0


User provided reference genes

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