Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g070300.4 Solanum lycopersicum HOM05D004162 ORTHO05D004543 7.3e-283 976.5 467 100.0
Sopen02g019390 Solanum pennellii HOM05D004162 ORTHO05D004543 8.4e-279 963.0 467 98.3
PGSC0003DMG400021171 Solanum tuberosum HOM05D004162 ORTHO05D004543 5.8e-264 913.7 467 93.1
CAN.G660.38 Capsicum annuum HOM05D004162 ORTHO05D004543 7.7e-248 860.1 465 86.7
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 1.6e-221 772.7 462 77.7
Nitab4.5_0000869g0150 Nicotiana tabacum HOM05D004162 ORTHO05D004543 1.0e-212 743.4 490 75.3
Nitab4.5_0005963g0070 Nicotiana tabacum HOM05D004162 ORTHO05D004543 2.6e-195 685.6 471 72.2
Cc04_g06230 Coffea canephora HOM05D004162 ORTHO05D004543 1.2e-184 650.2 458 64.4
Lj5C158G4 Lonicera japonica HOM05D004162 ORTHO05D004543 1.7e-178 629.8 458 62.7
MSTRG.9305 Avicennia marina HOM05D004162 ORTHO05D004543 1.7e-170 603.2 459 62.3
Hma1.2p1_3150F.1_g333200 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 7.8e-168 594.3 455 60.9
CSS0046385 Camellia sinensis var. sinensis HOM05D004162 ORTHO05D004543 3.9e-167 592.0 463 59.6
GSVIVG01008445001 Vitis vinifera HOM05D004162 ORTHO05D004543 1.7e-162 576.6 457 58.6
TAR371G1103 Trochodendron aralioides HOM05D004162 ORTHO05D004543 4.6e-160 568.5 461 57.9
Migut.D01539 Erythranthe guttata HOM05D004162 ORTHO05D004543 1.7e-159 566.6 458 58.3
SGA_v2.0_scaffold172G39016 Striga asiatica HOM05D004162 ORTHO05D004543 1.3e-157 560.5 470 56.8
SalBow3G1953 Salvia bowleyana HOM05D004162 ORTHO05D004543 2.4e-156 556.2 460 58.7
SalBow3G1690 Salvia bowleyana HOM05D004162 ORTHO05D004543 6.9e-156 554.7 460 58.5
Dinv08781 Davidia involucrata HOM05D004162 ORTHO05D004543 5.8e-155 551.6 406 62.6
Oeu046631.1 Olea europaea HOM05D004162 ORTHO05D004543 2.9e-154 549.3 462 57.1
Nn4g24245 Nelumbo nucifera HOM05D004162 ORTHO05D004543 2.5e-150 536.2 461 55.5
HanXRQChr14g0447361 Helianthus annuus HOM05D004162 ORTHO05D004543 5.6e-150 535.0 457 54.3
Haze_18859 Corylus avellana HOM05D004162 ORTHO05D004543 4.8e-149 531.9 458 54.1
Cfa019653 Carpinus fangiana HOM05D004162 ORTHO05D004543 6.9e-148 528.1 458 53.3
ECA238G4801 Erigeron canadensis HOM05D004162 ORTHO05D004543 1.2e-147 527.3 458 54.1
Eucgr.B00998 Eucalyptus grandis HOM05D004162 ORTHO05D004543 3.4e-147 525.8 458 53.7
Lsat_1_v5_gn_2_63961 Lactuca sativa HOM05D004162 ORTHO05D004543 1.0e-146 524.2 461 53.4
Atru.chr9.1725 Acer truncatum HOM05D004162 ORTHO05D004543 1.4e-145 520.4 460 53.0
Atru.chr9.1709 Acer truncatum HOM05D004162 ORTHO05D004543 2.5e-145 519.6 460 53.0
QL10p029785 Quercus lobata HOM05D004162 ORTHO05D004543 1.3e-143 513.8 539 47.9
CiPaw.15G143600 Carya illinoinensis HOM05D004162 ORTHO05D004543 5.1e-143 511.9 458 53.5
Ciclev10008209m.g Citrus clementina HOM05D004162 ORTHO05D004543 2.4e-140 503.1 461 50.8
TWI81G0681 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 1.2e-139 500.7 458 49.8
Manes.06G005900 Manihot esculenta HOM05D004162 ORTHO05D004543 1.5e-139 500.4 422 51.9
Nitab4.5_0001756g0030 Nicotiana tabacum HOM05D004162 ORTHO05D004543 7.6e-139 498.0 417 57.8
EL10Ac4g08358 Beta vulgaris HOM05D004162 ORTHO05D004543 1.0e-135 487.6 508 47.6
ClCG04G010610 Citrullus lanatus HOM05D004162 ORTHO05D004543 1.3e-135 487.3 459 49.7
PGR083G0911 Punica granatum HOM05D004162 ORTHO05D004543 5.7e-134 481.9 458 50.0
Ah.04g164220 Amaranthus hybridus HOM05D004162 ORTHO05D004543 1.6e-133 480.3 462 49.8
Thecc.03G055600 Theobroma cacao HOM05D004162 ORTHO05D004543 3.7e-133 479.2 439 50.3
Lalb_Chr05g0221631 Lupinus albus HOM05D004162 ORTHO05D004543 1.8e-132 476.9 459 49.5
CANSAT80G1525 Cannabis sativa HOM05D004162 ORTHO05D004543 1.1e-129 467.6 459 49.0
Peaxi162Scf00420g00077 Petunia axillaris HOM05D004162 ORTHO05D004543 1.9e-129 466.8 484 49.6
Sed0019203 Sechium edule HOM05D004162 ORTHO05D004543 2.1e-128 463.4 456 47.6
CsaV3_1G007180 Cucumis sativus L. HOM05D004162 ORTHO05D004543 4.6e-128 462.2 458 47.4
CANSAT54G2092 Cannabis sativa HOM05D004162 ORTHO05D004543 1.5e-126 457.2 459 47.1
Aqoxy6G00116 Aquilegia oxysepala HOM05D004162 ORTHO05D004543 2.0e-126 456.8 456 49.8
unitig_22.g6151 Utricularia gibba HOM05D004162 ORTHO05D004543 1.7e-125 453.8 462 48.3
Duzib205G1017 Durio zibethinus HOM05D004162 ORTHO05D004543 1.7e-122 443.7 438 48.6
Nn3g21925 Nelumbo nucifera HOM05D004162 ORTHO05D004543 2.9e-122 443.0 458 49.6
MBI08_g04930_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 4.2e-121 439.1 448 47.5
Psat4g000200 Pisum sativum HOM05D004162 ORTHO05D004543 3.3e-118 429.5 470 45.3
MELO3C002134.2 Cucumis melo HOM05D004162 ORTHO05D004543 2.9e-114 416.4 466 45.9
DCAR_003065 Daucus carota HOM05D004162 ORTHO05D004543 1.2e-112 411.0 387 50.4
MBI07_g11051_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 1.4e-111 407.5 442 46.4
RcHm_v2.0_Chr7g0178331 Rosa chinensis HOM05D004162 ORTHO05D004543 2.8e-109 399.8 467 44.3
TAR636G2328 Trochodendron aralioides HOM05D004162 ORTHO05D004543 2.4e-108 396.7 380 52.1
MD06G1227400 Malus domestica HOM05D004162 ORTHO05D004543 3.1e-108 396.4 458 44.3
Gorai.001G082700 Gossypium raimondii HOM05D004162 ORTHO05D004543 1.0e-106 391.3 438 45.4
PSO210G3845 Papaver somniferum HOM05D004162 ORTHO05D004543 3.8e-106 389.4 532 42.1
FvH4_6g53500 Fragaria vesca HOM05D004162 ORTHO05D004543 8.5e-106 388.3 469 42.4
FAN14G2905 Fragaria x ananassa HOM05D004162 ORTHO05D004543 8.5e-106 388.3 469 42.4
Gohir.D07G078300 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.9e-105 387.1 438 45.2
FAN05G0184 Fragaria x ananassa HOM05D004162 ORTHO05D004543 3.2e-105 386.3 469 42.4
FAN02G2531 Fragaria x ananassa HOM05D004162 ORTHO05D004543 4.7e-104 382.5 470 42.3
Gorai.008G207900 Gossypium raimondii HOM05D004162 ORTHO05D004543 1.4e-103 380.9 435 42.1
Gohir.A12G191000 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.8e-103 380.6 435 42.1
Gohir.D12G193100 Gossypium hirsutum HOM05D004162 ORTHO05D004543 2.3e-103 380.2 435 42.1
Glyma.05G246600 Glycine max HOM05D004162 ORTHO05D004543 4.0e-103 379.4 455 41.3
MD13G1006200 Malus domestica HOM05D004162 ORTHO05D004543 4.0e-103 379.4 471 42.5
Aqoxy7G03636 Aquilegia oxysepala HOM05D000527 ORTHO05D004543 8.8e-103 378.3 412 46.6
Ca_17185_v3 Cicer arietinum L. HOM05D004162 ORTHO05D004543 1.3e-101 374.4 467 41.8
FAN02G1371 Fragaria x ananassa HOM05D004162 ORTHO05D004543 1.8e-100 370.5 496 40.3
arahy.Tifrunner.gnm1.ann1.B7AHJA Arachis hypogaea HOM05D004162 ORTHO05D004543 7.0e-100 368.6 460 40.7
arahy.Tifrunner.gnm1.ann1.681ID1 Arachis hypogaea HOM05D004162 ORTHO05D004543 1.6e-99 367.5 460 40.4
FAN09G1804 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.0e-99 367.1 504 39.1
HPP92_005364 Vanilla planifolia HOM05D004162 ORTHO05D004543 6.5e-98 362.1 460 42.8
arahy.Tifrunner.gnm1.ann1.7MCX13 Arachis hypogaea HOM05D004162 ORTHO05D004543 8.5e-98 361.7 460 40.2
COL.COLO4_05717 Corchorus olitorius HOM05D004162 ORTHO05D004543 2.5e-97 360.1 359 46.2
VMungo0251G2472 Vigna mungo HOM05D004162 ORTHO05D004543 4.2e-97 359.4 444 42.3
Prupe.5G233900 Prunus persica HOM05D004162 ORTHO05D004543 5.5e-97 359.0 384 48.2
Medtr8g107380 Medicago truncatula HOM05D004162 ORTHO05D004543 1.2e-94 351.3 463 40.0
THA.LOC104812555 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 5.7e-94 349.0 466 42.5
ATR0594G087 Amborella trichopoda HOM05D004162 ORTHO05D004543 7.5e-94 348.6 475 38.9
Glyma.08G054800 Glycine max HOM05D004162 ORTHO05D004543 2.4e-92 343.6 440 40.7
PSO339G4834 Papaver somniferum HOM05D004162 ORTHO05D004543 3.5e-91 339.7 457 41.6
Oeu011444.1 Olea europaea HOM05D004162 ORTHO05D004543 9.5e-89 331.6 445 39.3
PSO513G0134 Papaver somniferum HOM05D004162 ORTHO05D004543 3.6e-88 329.7 457 40.7
Actinidia07535 Actinidia chinensis HOM05D004162 ORTHO05D004543 8.0e-88 328.6 444 40.1
Haze_09240 Corylus avellana HOM05D004162 ORTHO05D004543 3.0e-87 326.6 442 41.4
Cfa011869 Carpinus fangiana HOM05D004162 ORTHO05D004543 5.2e-87 325.9 455 41.1
Aa31LG5G17260 Aethionema arabicum HOM05D004162 ORTHO05D004543 3.4e-86 323.2 462 39.4
Rhsim08G0126500 Rhododendron simsii HOM05D004162 ORTHO05D004543 5.7e-86 322.4 261 56.7
C09p70490 Brassica napus HOM05D004162 ORTHO05D004543 3.7e-85 319.7 464 39.7
Zm00001eb433700 Zea mays HOM05D004162 ORTHO05D004543 6.4e-85 318.9 464 39.0
BraA10t45047Z Brassica rapa HOM05D004162 ORTHO05D004543 3.2e-84 316.6 464 39.2
BolC9t59794H Brassica oleracea HOM05D004162 ORTHO05D004543 5.4e-84 315.8 464 38.8
THA.LOC104810218 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 5.4e-84 315.8 470 38.1
THA.LOC104826807 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 5.4e-84 315.8 470 38.1
AL6G16350 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 1.2e-83 314.7 467 39.0
AT5G06310 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 4.6e-83 312.8 462 39.6
A10p30070 Brassica napus HOM05D004162 ORTHO05D004543 4.6e-83 312.8 464 39.0
Sp6g36540 Schrenkiella parvula HOM05D004162 ORTHO05D004543 1.0e-82 311.6 461 38.2
Carub.0006s0520 Capsella rubella HOM05D004162 ORTHO05D004543 5.0e-82 309.3 462 38.3
Cc07_g00810 Coffea canephora HOM05D004162 ORTHO05D004543 5.0e-82 309.3 455 37.1
AL3G42790 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 1.5e-81 307.8 476 37.8
Thhalv10013532m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 1.5e-81 307.8 463 38.0
CARHR103050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 9.5e-81 305.1 478 37.7
AT2G05210 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 4.7e-80 302.8 476 36.8
Atru.chr1.59 Acer truncatum HOM05D004162 ORTHO05D004543 3.1e-79 300.1 429 38.7
Thhalv10028628m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 6.8e-79 298.9 471 36.9
Sp6g08970 Schrenkiella parvula HOM05D004162 ORTHO05D004543 8.9e-79 298.5 473 37.4
PSO832G0101 Papaver somniferum HOM05D004162 ORTHO05D004543 1.2e-78 298.1 478 38.9
TWI75G0727 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 1.5e-78 297.7 461 36.4
CARHR207050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 9.8e-78 295.0 462 37.4
Rhsim02G0000200 Rhododendron simsii HOM05D004162 ORTHO05D004543 8.3e-77 292.0 376 42.3
Phvul.002G330500 Phaseolus vulgaris HOM05D004162 ORTHO05D004543 1.5e-73 281.2 305 46.6
Potri.012G046400 Populus trichocarpa HOM05D004162 ORTHO05D004543 2.8e-72 276.9 255 52.2
CDE11G0199 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 8.1e-72 275.4 307 46.3
AUR62037555 Chenopodium quinoa HOM05D004162 ORTHO05D004543 1.1e-71 275.0 333 42.3
Ciclev10005180m.g Citrus clementina HOM05D004162 ORTHO05D004543 5.2e-71 272.7 372 40.6
unitig_90.g27442 Utricularia gibba HOM05D004162 ORTHO05D004543 1.2e-70 271.6 437 36.6
Gohir.A07G073600 Gossypium hirsutum HOM05D004162 ORTHO05D004543 7.5e-70 268.9 314 43.0
BcaC06g32364 Brassica carinata HOM05D004162 ORTHO05D004543 2.2e-69 267.3 465 36.1
Mapoly0002s0230 Marchantia polymorpha HOM05D004162 ORTHO05D004543 4.9e-69 266.2 496 32.9
BcaC04g21892 Brassica carinata HOM05D004162 ORTHO05D004543 1.2e-67 261.5 460 36.5
C09p26100 Brassica napus HOM05D004162 ORTHO05D004543 1.2e-67 261.5 460 36.5
Pp3c18_21900 Physcomitrium patens HOM05D004162 ORTHO05D004543 3.5e-67 260.0 495 33.1
A09p20680 Brassica napus HOM05D004162 ORTHO05D004543 4.6e-67 259.6 459 36.8
BolC9t55513H Brassica oleracea HOM05D004162 ORTHO05D004543 1.3e-66 258.1 460 35.9
AagrBONN_evm.TU.Sc2ySwM_228.478 Anthoceros agrestis HOM05D004162 ORTHO05D004543 2.3e-66 257.3 487 33.7
Sc04g0004810 Simmondsia chinensis HOM05D004162 ORTHO05D004543 3.9e-66 256.5 254 47.6
BcaB07g30993 Brassica carinata HOM05D004162 ORTHO05D004543 6.6e-66 255.8 464 35.1
BraA09t37672Z Brassica rapa HOM05D004162 ORTHO05D004543 8.6e-66 255.4 459 36.6
VMungo0251G0610 Vigna mungo HOM05D004162 ORTHO05D004543 2.3e-63 247.3 424 33.5
vmacro09753 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 8.9e-63 245.4 489 33.3
SHI19078 Sapria himalayana HOM05D004162 ORTHO05D004543 1.2e-62 245.0 260 47.3
Hma1.2p1_0013F.1_g007880 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 5.4e-60 236.1 301 42.9
CANSAT78G2305 Cannabis sativa HOM05D004162 ORTHO05D004543 9.2e-60 235.3 436 35.3
SMO358G0036 Selaginella moellendorffii HOM05D002930 ORTHO05D003283 5.2e-55 219.5 507 32.3
Dinv27223 Davidia involucrata HOM05D004162 ORTHO05D004543 8.9e-55 218.8 293 38.9
Lj4g0021249 Lotus japonicus HOM05D002609 ORTHO05D002820 9.3e-52 208.8 270 38.1
Carub.0003s2670 Capsella rubella HOM05D004162 ORTHO05D004543 1.6e-48 198.0 361 33.8
CDE02G0891 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 1.7e-45 188.0 203 47.3
Hund17739 Selenicereus undatus HOM05D004162 ORTHO05D004543 1.1e-44 185.3 176 50.0
AUR62019586 Chenopodium quinoa HOM05D004162 ORTHO05D004543 6.6e-42 176.0 135 58.5
TPR.G1445 Trifolium pratense HOM05D004162 ORTHO05D004543 4.3e-41 173.3 293 37.5
Cfa023195 Carpinus fangiana HOM05D004162 ORTHO05D004543 3.6e-40 170.2 329 34.7
AUR62013945 Chenopodium quinoa HOM05D004162 ORTHO05D004543 5.8e-38 162.9 148 51.4
CiPaw.09G010800 Carya illinoinensis HOM05D004162 ORTHO05D004543 3.4e-30 137.1 177 42.4
CBR_g32246 Chara braunii HOM05D004162 ORTHO05D004543 2.2e-29 134.4 436 27.1
HPP92_005316 Vanilla planifolia HOM05D004162 ORTHO05D004543 3.2e-28 130.6 196 36.2
Sabra12G0032500 Salix brachista HOM05D004162 ORTHO05D004543 2.1e-24 117.9 86 64.0
CBR_g34767 Chara braunii HOM05D004162 ORTHO05D004543 1.9e-20 104.8 296 26.4
CiPaw.09G010700 Carya illinoinensis HOM05D004162 ORTHO05D004543 2.2e-16 91.3 117 40.2
SEGI_33776 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 6.3e-16 89.7 133 36.1
SEGI_28626 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 1.0e-13 82.4 107 43.0
ATR1149G147 Amborella trichopoda HOM05D004162 ORTHO05D004543 2.2e-13 81.3 142 32.4
AT2G04395 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 1.9e-12 78.2 83 39.8
QL10p030172 Quercus lobata HOM05D004162 ORTHO05D004543 2.5e-12 77.8 62 54.8
Haze_09935 Corylus avellana HOM05D001513 ORTHO05D004543 2.7e-11 74.3 55 61.8
Lj1g0024684 Lotus japonicus HOM05D004162 ORTHO05D004543 2.3e-10 71.2 60 56.7
vmacro09754 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 1.2e-06 58.9 86 34.9
SHI19079 Sapria himalayana HOM05D004162 ORTHO05D004543 1.5e-06 58.5 62 40.3
VMungo0464G1805 Vigna mungo HOM05D004162 ORTHO05D004543 5.9e-06 56.6 99 40.4


User provided reference genes

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