Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g070230.2 Solanum lycopersicum HOM05D003008 ORTHO05D003346 2.4e-116 422.2 207 100.0
Sopen02g019320 Solanum pennellii HOM05D003008 ORTHO05D003346 2.1e-101 372.5 185 97.3
PGSC0003DMG400021105 Solanum tuberosum HOM05D003008 ORTHO05D003346 4.8e-93 344.7 185 90.3
CAN.G660.46 Capsicum annuum HOM05D003008 ORTHO05D003346 2.8e-69 265.8 179 74.9
Nitab4.5_0001181g0080 Nicotiana tabacum HOM05D003008 ORTHO05D003346 3.8e-66 255.4 197 67.5
Nitab4.5_0011416g0030 Nicotiana tabacum HOM05D003008 ORTHO05D003346 7.0e-52 208.0 219 53.9
Peaxi162Scf00701g00055 Petunia axillaris HOM05D003008 ORTHO05D003346 1.9e-41 173.3 190 55.8
Dinv26204 Davidia involucrata HOM05D003008 ORTHO05D003346 4.0e-39 165.6 190 45.3
Migut.M01921 Erythranthe guttata HOM05D003008 ORTHO05D003346 1.0e-34 151.0 166 48.2
Actinidia33693 Actinidia chinensis HOM05D003008 ORTHO05D003346 1.9e-33 146.7 185 42.7
DCAR_007819 Daucus carota HOM05D003008 ORTHO05D003346 3.6e-32 142.5 136 50.0
Cc02_g32870 Coffea canephora HOM05D003008 ORTHO05D003346 3.4e-30 136.0 205 39.5
HanXRQChr01g0020621 Helianthus annuus HOM05D003008 ORTHO05D003346 3.4e-30 136.0 166 42.8
Manes.09G088066 Manihot esculenta HOM05D003008 ORTHO05D003346 2.9e-29 132.9 128 50.8
Sabra16G0312900 Salix brachista HOM05D003008 ORTHO05D003346 3.7e-29 132.5 133 49.6
ECA233G3161 Erigeron canadensis HOM05D003008 ORTHO05D003346 6.4e-29 131.7 129 46.5
Rhsim13G0124700 Rhododendron simsii HOM05D003008 ORTHO05D003346 8.3e-29 131.3 180 39.4
Sabra16G0312700 Salix brachista HOM05D003008 ORTHO05D003346 1.4e-28 130.6 133 48.1
MD05G1265600 Malus domestica HOM05D003008 ORTHO05D003346 3.2e-28 129.4 202 38.1
Potri.001G461200 Populus trichocarpa HOM05D003008 ORTHO05D003346 3.2e-28 129.4 133 48.9
Prupe.4G099900 Prunus persica HOM05D003008 ORTHO05D003346 4.1e-28 129.0 205 39.5
Atru.chr10.698 Acer truncatum HOM05D003008 ORTHO05D003346 7.0e-28 128.3 141 47.5
TWI63G0820 Tripterygium wilfordii HOM05D003008 ORTHO05D003346 1.6e-27 127.1 152 44.1
CANSAT64G0697 Cannabis sativa HOM05D003008 ORTHO05D003346 2.1e-27 126.7 206 40.3
Haze_05935 Corylus avellana HOM05D003008 ORTHO05D003346 2.7e-27 126.3 153 47.1
SalBow8G1795 Salvia bowleyana HOM05D003008 ORTHO05D003346 2.7e-27 126.3 147 44.2
Cfa000776 Carpinus fangiana HOM05D003008 ORTHO05D003346 3.5e-27 125.9 153 47.1
CSS0037242 Camellia sinensis var. sinensis HOM05D003008 ORTHO05D003346 3.9e-26 122.5 195 41.0
CDE01G0377 Ceratophyllum demersum HOM05D003008 ORTHO05D003346 1.5e-25 120.6 155 41.9
ClCG03G008500 Citrullus lanatus HOM05D003008 ORTHO05D003346 4.3e-25 119.0 130 50.8
Ciclev10015609m.g Citrus clementina HOM05D003008 ORTHO05D003346 4.3e-25 119.0 140 45.0
Lsat_1_v5_gn_1_91780 Lactuca sativa HOM05D003008 ORTHO05D003346 4.3e-25 119.0 129 46.5
MSTRG.7558 Avicennia marina HOM05D003008 ORTHO05D003346 5.6e-25 118.6 182 38.5
Nn7g37799 Nelumbo nucifera HOM05D003008 ORTHO05D003346 5.6e-25 118.6 128 47.7
Lj1A1159T86 Lonicera japonica HOM05D003008 ORTHO05D003346 9.5e-25 117.9 115 51.3
Sed0001268 Sechium edule HOM05D003008 ORTHO05D003346 9.5e-25 117.9 188 41.5
ATR0763G210 Amborella trichopoda HOM05D003008 ORTHO05D003346 1.2e-24 117.5 147 44.2
Psat1g164720 Pisum sativum HOM05D003008 ORTHO05D003346 1.6e-24 117.1 168 44.0
Sopen02g006420 Solanum pennellii HOM05D003008 ORTHO05D003346 1.6e-24 117.1 199 38.7
Lsat_1_v5_gn_8_128321 Lactuca sativa HOM05D003008 ORTHO05D003346 2.1e-24 116.7 165 40.6
arahy.Tifrunner.gnm1.ann1.MYLU20 Arachis hypogaea HOM05D003008 ORTHO05D003346 2.8e-24 116.3 183 41.5
Dinv08829 Davidia involucrata HOM05D003008 ORTHO05D003346 2.8e-24 116.3 153 45.8
Eucgr.D01012 Eucalyptus grandis HOM05D003008 ORTHO05D003346 2.8e-24 116.3 131 45.0
RcHm_v2.0_Chr5g0018141 Rosa chinensis HOM05D003008 ORTHO05D003346 2.8e-24 116.3 126 44.4
unitig_92.g28180 Utricularia gibba HOM05D003008 ORTHO05D003346 1.1e-23 114.4 194 37.6
Ca_00892_v3 Cicer arietinum L. HOM05D003008 ORTHO05D003346 1.4e-23 114.0 143 45.5
Cc09_g07360 Coffea canephora HOM05D003008 ORTHO05D003346 1.4e-23 114.0 199 37.7
FAN21G3010 Fragaria x ananassa HOM05D003008 ORTHO05D003346 1.4e-23 114.0 195 35.9
Medtr5g099220 Medicago truncatula HOM05D003008 ORTHO05D003346 1.4e-23 114.0 130 48.5
Actinidia33712 Actinidia chinensis HOM05D003008 ORTHO05D003346 1.8e-23 113.6 189 36.5
arahy.Tifrunner.gnm1.ann1.57FUCZ Arachis hypogaea HOM05D003008 ORTHO05D003346 1.8e-23 113.6 130 47.7
Migut.M01920 Erythranthe guttata HOM05D003008 ORTHO05D003346 1.8e-23 113.6 177 37.9
Glyma.09G028800 Glycine max HOM05D003008 ORTHO05D003346 2.3e-23 113.2 133 47.4
Lj6g0000719 Lotus japonicus HOM05D003008 ORTHO05D003346 2.3e-23 113.2 129 45.7
CsaV3_1G037590 Cucumis sativus L. HOM05D003008 ORTHO05D003346 4.0e-23 112.5 132 49.2
Eucgr.D01628 Eucalyptus grandis HOM05D003008 ORTHO05D003346 4.0e-23 112.5 138 42.8
Medtr2g031740 Medicago truncatula HOM05D003008 ORTHO05D003346 4.0e-23 112.5 131 48.1
Thecc.06G011100 Theobroma cacao HOM05D003008 ORTHO05D003346 4.0e-23 112.5 131 47.3
Rhsim13G0124600 Rhododendron simsii HOM05D003008 ORTHO05D003346 6.8e-23 111.7 166 41.0
Solyc02g022830.3 Solanum lycopersicum HOM05D003008 ORTHO05D003346 8.9e-23 111.3 201 37.8
CSS0042083 Camellia sinensis var. sinensis HOM05D003008 ORTHO05D003346 1.2e-22 110.9 140 47.1
FvH4_3g11200 Fragaria vesca HOM05D003008 ORTHO05D003346 1.2e-22 110.9 195 34.9
Nitab4.5_0000076g0040 Nicotiana tabacum HOM05D003008 ORTHO05D003346 2.0e-22 110.2 200 37.5
CAN.G39.23 Capsicum annuum HOM05D003008 ORTHO05D003346 2.6e-22 109.8 142 44.4
Lalb_Chr18g0058251 Lupinus albus HOM05D003008 ORTHO05D003346 2.6e-22 109.8 192 37.0
Prupe.4G099700 Prunus persica HOM05D003008 ORTHO05D003346 2.6e-22 109.8 142 44.4
SalBow8G1512 Salvia bowleyana HOM05D003008 ORTHO05D003346 3.4e-22 109.4 200 39.0
TPR.G8027 Trifolium pratense HOM05D003008 ORTHO05D003346 3.4e-22 109.4 134 44.0
vmacro03472 Vaccinium macrocarpon HOM05D003008 ORTHO05D003346 3.4e-22 109.4 182 37.9
Peaxi162Scf00155g00316 Petunia axillaris HOM05D003008 ORTHO05D003346 4.4e-22 109.0 188 39.9
Lsat_1_v5_gn_1_91720 Lactuca sativa HOM05D003008 ORTHO05D003346 5.8e-22 108.6 205 36.6
PSO541G5492 Papaver somniferum HOM05D003008 ORTHO05D003346 5.8e-22 108.6 137 44.5
CiPaw.03G113700 Carya illinoinensis HOM05D003008 ORTHO05D003346 7.5e-22 108.2 131 45.0
HanXRQChr01g0020641 Helianthus annuus HOM05D003008 ORTHO05D003346 7.5e-22 108.2 199 33.7
QL05p064497 Quercus lobata HOM05D003008 ORTHO05D003346 1.3e-21 107.5 156 39.7
Gohir.A05G112501 Gossypium hirsutum HOM05D003008 ORTHO05D003346 1.7e-21 107.1 172 38.4
Gohir.D05G112900 Gossypium hirsutum HOM05D003008 ORTHO05D003346 1.7e-21 107.1 162 38.9
Hma1.2p1_1413F.1_g281810 Hydrangea macrophylla HOM05D003008 ORTHO05D003346 1.7e-21 107.1 178 37.6
Cfa023567 Carpinus fangiana HOM05D003008 ORTHO05D003346 2.2e-21 106.7 129 45.0
QL03p057306 Quercus lobata HOM05D003008 ORTHO05D003346 2.2e-21 106.7 131 41.2
arahy.Tifrunner.gnm1.ann1.WH7KDQ Arachis hypogaea HOM05D003008 ORTHO05D003346 2.9e-21 106.3 168 35.7
Duzib160G0679 Durio zibethinus HOM05D003008 ORTHO05D003346 2.9e-21 106.3 177 37.3
MD10G1243800 Malus domestica HOM05D003008 ORTHO05D003346 2.9e-21 106.3 161 38.5
Oeu060320.2 Olea europaea HOM05D003008 ORTHO05D003346 2.9e-21 106.3 125 44.8
Sed0021502 Sechium edule HOM05D003008 ORTHO05D003346 2.9e-21 106.3 191 35.1
Aqoxy1G01512 Aquilegia oxysepala HOM05D003008 ORTHO05D003346 3.7e-21 105.9 139 38.8
arahy.Tifrunner.gnm1.ann1.SN2S9U Arachis hypogaea HOM05D003008 ORTHO05D003346 3.7e-21 105.9 168 35.1
AUR62025821 Chenopodium quinoa HOM05D003008 ORTHO05D003346 3.7e-21 105.9 149 39.6
Ca_25498_v3 Cicer arietinum L. HOM05D003008 ORTHO05D003346 4.9e-21 105.5 147 38.8
Gohir.D05G113000 Gossypium hirsutum HOM05D003008 ORTHO05D003346 4.9e-21 105.5 172 38.4
Thecc.06G011200 Theobroma cacao HOM05D003008 ORTHO05D003346 4.9e-21 105.5 213 33.3
Lalb_Chr15g0088941 Lupinus albus HOM05D003008 ORTHO05D003346 6.4e-21 105.1 160 38.8
ECA248G0148 Erigeron canadensis HOM05D003008 ORTHO05D003346 1.1e-20 104.4 180 34.4
Gorai.009G117100 Gossypium raimondii HOM05D003008 ORTHO05D003346 1.1e-20 104.4 187 37.4
PSO675G7488 Papaver somniferum HOM05D003008 ORTHO05D003346 1.1e-20 104.4 137 43.1
Duzib235G1093 Durio zibethinus HOM05D003008 ORTHO05D003346 1.4e-20 104.0 164 39.6
Atru.chr10.699 Acer truncatum HOM05D003008 ORTHO05D003346 1.9e-20 103.6 168 38.7
CDE02G0274 Ceratophyllum demersum HOM05D003008 ORTHO05D003346 1.9e-20 103.6 134 41.8
EL10Ac8g19523 Beta vulgaris HOM05D003008 ORTHO05D003346 3.2e-20 102.8 126 45.2
CANSAT35G1991 Cannabis sativa HOM05D003008 ORTHO05D003346 3.2e-20 102.8 180 34.4
Ciclev10014667m.g Citrus clementina HOM05D003008 ORTHO05D003346 3.2e-20 102.8 132 39.4
Medtr2g031620 Medicago truncatula HOM05D003008 ORTHO05D003346 3.2e-20 102.8 171 35.1
FAN25G1216 Fragaria x ananassa HOM05D003008 ORTHO05D003346 4.1e-20 102.4 216 31.5
Glyma.09G028600 Glycine max HOM05D003008 ORTHO05D003346 4.1e-20 102.4 127 40.2
Glyma.15G134500 Glycine max HOM05D003008 ORTHO05D003346 5.4e-20 102.1 127 40.9
Phvul.006G124400 Phaseolus vulgaris HOM05D003008 ORTHO05D003346 5.4e-20 102.1 133 38.3
FAN16G1739 Fragaria x ananassa HOM05D003008 ORTHO05D003346 7.1e-20 101.7 234 31.2
unitig_92.g28176 Utricularia gibba HOM05D003008 ORTHO05D003346 7.1e-20 101.7 132 42.4
Lj6g0020929 Lotus japonicus HOM05D003008 ORTHO05D003346 1.2e-19 100.9 185 34.1
GSVIVG01008778001 Vitis vinifera HOM05D003008 ORTHO05D003346 1.2e-19 100.9 139 43.2
Lalb_Chr18g0058241 Lupinus albus HOM05D003008 ORTHO05D003346 1.6e-19 100.5 134 39.6
MELO3C002865.2 Cucumis melo HOM05D003008 ORTHO05D003346 2.7e-19 99.8 195 32.3
DCAR_007820 Daucus carota HOM05D003008 ORTHO05D003346 2.7e-19 99.8 151 36.4
Sp1g26580 Schrenkiella parvula HOM05D003008 ORTHO05D003346 2.7e-19 99.8 189 34.4
SGA_v2.0_scaffold306G48030 Striga asiatica HOM05D003008 ORTHO05D003346 3.5e-19 99.4 155 38.7
AUR62029886 Chenopodium quinoa HOM05D003008 ORTHO05D003346 4.6e-19 99.0 138 39.9
THA.LOC104798583 Tarenaya hassleriana HOM05D003008 ORTHO05D003346 6.0e-19 98.6 182 35.7
GSVIVG01021741001 Vitis vinifera HOM05D003008 ORTHO05D003346 6.0e-19 98.6 130 43.8
Aa31LG6G11900 Aethionema arabicum HOM05D003008 ORTHO05D003346 7.8e-19 98.2 192 35.9
COL.COLO4_22894 Corchorus olitorius HOM05D003008 ORTHO05D003346 7.8e-19 98.2 164 35.4
Manes.14G125700 Manihot esculenta HOM05D003008 ORTHO05D003346 1.0e-18 97.8 124 39.5
GSVIVG01021728001 Vitis vinifera HOM05D003008 ORTHO05D003346 1.0e-18 97.8 130 43.8
A09p35720 Brassica napus HOM05D003008 ORTHO05D003346 1.7e-18 97.1 189 34.9
BraA09t39097Z Brassica rapa HOM05D003008 ORTHO05D003346 2.3e-18 96.7 197 35.0
Potri.001G461300 Populus trichocarpa HOM05D003008 ORTHO05D003346 2.3e-18 96.7 133 40.6
BcaC05g27092 Brassica carinata HOM05D003008 ORTHO05D003346 3.0e-18 96.3 189 34.9
C05p29740 Brassica napus HOM05D003008 ORTHO05D003346 3.0e-18 96.3 189 34.9
CsaV3_1G037560 Cucumis sativus L. HOM05D003008 ORTHO05D003346 5.1e-18 95.5 133 38.3
PGR044G1782 Punica granatum HOM05D003008 ORTHO05D003346 5.1e-18 95.5 193 33.2
VMungo0540G1323 Vigna mungo HOM05D003008 ORTHO05D003346 5.1e-18 95.5 136 37.5
BcaB07g32707 Brassica carinata HOM05D003008 ORTHO05D003346 8.6e-18 94.7 206 33.0
Lj2A336T37 Lonicera japonica HOM05D003008 ORTHO05D003346 8.6e-18 94.7 133 42.1
Sc10g0009650 Simmondsia chinensis HOM05D003008 ORTHO05D003346 8.6e-18 94.7 103 49.5
SalBow8G4789 Salvia bowleyana HOM05D003008 ORTHO05D003346 1.5e-17 94.0 156 37.8
SGA_v2.0_scaffold223G42877 Striga asiatica HOM05D003008 ORTHO05D003346 1.5e-17 94.0 125 40.8
GSVIVG01037928001 Vitis vinifera HOM05D003008 ORTHO05D003346 1.5e-17 94.0 94 52.1
BolC5t31702H Brassica oleracea HOM05D003008 ORTHO05D003346 1.9e-17 93.6 196 34.7
PSO063G4114 Papaver somniferum HOM05D003008 ORTHO05D003346 1.9e-17 93.6 156 36.5
Phvul.006G124200 Phaseolus vulgaris HOM05D003008 ORTHO05D003346 1.9e-17 93.6 107 46.7
TWI15G0228 Tripterygium wilfordii HOM05D003008 ORTHO05D003346 5.6e-17 92.0 132 39.4
Carub.0001s2896 Capsella rubella HOM05D003008 ORTHO05D003346 9.5e-17 91.3 191 36.6
AT1G30680 Arabidopsis thaliana HOM05D003008 ORTHO05D003346 1.6e-16 90.5 198 30.8
Thhalv10006950m.g Eutrema salsugineum HOM05D003008 ORTHO05D003346 1.6e-16 90.5 200 34.5
HanXRQChr11g0340941 Helianthus annuus HOM05D003008 ORTHO05D003346 1.6e-16 90.5 133 38.3
AL1G44740 Arabidopsis lyrata HOM05D003008 ORTHO05D003346 2.8e-16 89.7 198 31.3
COL.COLO4_22895 Corchorus olitorius HOM05D003008 ORTHO05D003346 2.8e-16 89.7 158 34.2
TAR626G0717 Trochodendron aralioides HOM05D003008 ORTHO05D003346 1.4e-15 87.4 141 36.2
CARHR030150 Cardamine hirsuta HOM05D003008 ORTHO05D003346 3.1e-15 86.3 209 31.6
Cpa.g.sc489.1 Carica papaya HOM05D003008 ORTHO05D003346 3.1e-15 86.3 198 31.8
Haze_13591 Corylus avellana HOM05D003008 ORTHO05D003346 3.1e-15 86.3 153 36.6
Lj1C1159T8 Lonicera japonica HOM05D003008 ORTHO05D003346 3.1e-15 86.3 141 35.5
HPP92_005928 Vanilla planifolia HOM05D003008 ORTHO05D003346 3.1e-15 86.3 196 30.6
CiPaw.09G146400 Carya illinoinensis HOM05D003008 ORTHO05D003346 4.0e-15 85.9 96 47.9
Psat1g164800 Pisum sativum HOM05D003008 ORTHO05D003346 4.0e-15 85.9 148 33.1
Sabra16G0312800 Salix brachista HOM05D003008 ORTHO05D003346 6.8e-15 85.1 217 31.3
Zm00001eb274090 Zea mays HOM05D003008 ORTHO05D003346 6.8e-15 85.1 133 36.1
Sabra16G0313000 Salix brachista HOM05D003008 ORTHO05D003346 8.9e-15 84.7 217 30.9
RcHm_v2.0_Chr5g0018171 Rosa chinensis HOM05D003008 ORTHO05D003346 1.2e-14 84.3 161 33.5
TPR.G15179 Trifolium pratense HOM05D003008 ORTHO05D003346 1.2e-14 84.3 144 36.8
Nitab4.5_0002005g0070 Nicotiana tabacum HOM05D003008 ORTHO05D003346 2.0e-14 83.6 140 38.6
ClCG03G008470 Citrullus lanatus HOM05D003008 ORTHO05D003346 2.6e-14 83.2 98 43.9
FAN16G0127 Fragaria x ananassa HOM05D003008 ORTHO05D003346 7.6e-14 81.6 125 38.4
SEGI_26502 Sequoiadendron giganteum HOM05D003008 ORTHO05D003346 9.9e-14 81.3 112 37.5
FvH4_3g11220 Fragaria vesca HOM05D003008 ORTHO05D003346 1.3e-13 80.9 125 37.6
FAN21G3776 Fragaria x ananassa HOM05D003008 ORTHO05D003346 3.8e-13 79.3 125 37.6
FAN25G1988 Fragaria x ananassa HOM05D003008 ORTHO05D003346 6.4e-13 78.6 181 29.8
Aqoxy7G01281 Aquilegia oxysepala HOM05D003008 ORTHO05D003346 1.1e-12 77.8 116 34.5
MBI02_g32311_MAGBIO Magnolia biondii HOM05D003008 ORTHO05D003346 2.4e-12 76.6 168 31.0
SGA_v2.0_scaffold1G00291 Striga asiatica HOM05D003008 ORTHO05D003346 1.2e-11 74.3 110 36.4
AT1G30660 Arabidopsis thaliana HOM05D003008 ORTHO05D003346 2.1e-11 73.6 135 36.3
arahy.Tifrunner.gnm1.ann1.28UEMM Arachis hypogaea HOM05D003008 ORTHO05D003346 2.1e-11 73.6 81 48.1
HPP92_013208 Vanilla planifolia HOM05D003008 ORTHO05D003346 3.5e-11 72.8 148 33.8
AL1G44720 Arabidopsis lyrata HOM05D003008 ORTHO05D003346 6.6e-10 68.6 123 34.1
unitig_92.g28223 Utricularia gibba HOM05D003008 ORTHO05D003346 1.1e-09 67.8 103 36.9
Mapoly0003s0305 Marchantia polymorpha HOM05D003008 ORTHO05D003346 1.9e-09 67.0 160 30.6
SMO364G0389 Selaginella moellendorffii HOM05D003008 ORTHO05D003346 4.3e-09 65.9 113 33.6
TWI15G0229 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 1.2e-08 64.3 113 32.7
Oeu058494.1 Olea europaea HOM05D000022 ORTHO05D000071 1.8e-07 60.5 100 37.0
vmacro02674 Vaccinium macrocarpon HOM05D003008 ORTHO05D003346 3.1e-07 59.7 58 50.0
ECA233G1693 Erigeron canadensis HOM05D003008 ORTHO05D003346 2.0e-06 57.0 50 50.0
MCO14G370 Micromonas commoda HOM05D003008 ORTHO05D003346 9.9e-06 54.7 125 28.0


User provided reference genes

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