Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g069980.4 Solanum lycopersicum HOM05D003999 ORTHO05D005219 0.0e+00 1147.1 553 100.0
Sopen02g019140 Solanum pennellii HOM05D003999 ORTHO05D005219 4.3e-274 947.6 470 97.9
PGSC0003DMG400021118 Solanum tuberosum HOM05D003999 ORTHO05D005219 6.9e-248 860.5 518 84.2
CAN.G79.26 Capsicum annuum HOM05D003999 ORTHO05D005219 1.7e-206 723.0 473 76.5
Nitab4.5_0001225g0140 Nicotiana tabacum HOM05D003999 ORTHO05D005219 1.3e-190 670.2 552 65.0
Peaxi162Scf00670g00347 Petunia axillaris HOM05D003999 ORTHO05D005219 8.3e-185 651.0 487 69.2
Nitab4.5_0001583g0100 Nicotiana tabacum HOM05D003999 ORTHO05D005219 9.6e-181 637.5 483 69.4
Dinv41175 Davidia involucrata HOM05D003999 ORTHO05D005219 3.4e-109 399.8 495 47.5
Actinidia29951 Actinidia chinensis HOM05D003999 ORTHO05D005219 3.0e-102 376.7 506 44.7
Actinidia38494 Actinidia chinensis HOM05D003999 ORTHO05D005219 8.3e-100 368.6 523 44.2
vmacro05997 Vaccinium macrocarpon HOM05D003999 ORTHO05D005219 2.0e-93 347.4 461 45.3
Cc06_g20850 Coffea canephora HOM05D003999 ORTHO05D005219 1.6e-90 337.8 407 48.4
Rhsim03G0266100 Rhododendron simsii HOM05D003999 ORTHO05D005219 3.9e-89 333.2 461 44.7
Cfa013453 Carpinus fangiana HOM05D003999 ORTHO05D005219 1.5e-88 331.3 493 40.8
MSTRG.26544 Avicennia marina HOM05D003999 ORTHO05D005219 4.7e-87 326.2 421 43.5
Atru.chr7.755 Acer truncatum HOM05D003999 ORTHO05D005219 8.0e-87 325.5 423 45.4
Atru.chr7.776 Acer truncatum HOM05D003999 ORTHO05D005219 8.0e-87 325.5 423 45.4
Hma1.2p1_1326F.1_g275830 Hydrangea macrophylla HOM05D003999 ORTHO05D005219 3.1e-86 323.6 479 42.0
MELO3C017428.2 Cucumis melo HOM05D003999 ORTHO05D005219 1.4e-83 314.7 403 44.9
TAR625G1146 Trochodendron aralioides HOM05D003999 ORTHO05D005219 1.4e-83 314.7 523 38.8
CsaV3_1G031880 Cucumis sativus L. HOM05D003999 ORTHO05D005219 4.6e-82 309.7 441 42.0
Manes.06G019800 Manihot esculenta HOM05D003999 ORTHO05D005219 4.6e-82 309.7 458 41.0
Prupe.1G075400 Prunus persica HOM05D003999 ORTHO05D005219 1.0e-81 308.5 475 41.9
Ciclev10010423m.g Citrus clementina HOM05D003999 ORTHO05D005219 3.9e-81 306.6 465 39.8
CiPaw.07G197100 Carya illinoinensis HOM05D003999 ORTHO05D005219 1.5e-80 304.7 469 39.9
MD13G1241700 Malus domestica HOM05D003999 ORTHO05D005219 7.3e-80 302.4 397 43.8
Sed0015737 Sechium edule HOM05D003999 ORTHO05D005219 1.8e-78 297.7 404 44.1
Sed0001699 Sechium edule HOM05D003999 ORTHO05D005219 1.2e-77 295.0 439 41.7
CSS0024594 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 2.0e-77 294.3 466 41.8
TWI63G1413 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 5.8e-77 292.7 491 39.9
RcHm_v2.0_Chr7g0219501 Rosa chinensis HOM05D003999 ORTHO05D005219 4.9e-76 289.7 407 43.0
Migut.L01882 Erythranthe guttata HOM05D003999 ORTHO05D005219 3.2e-75 287.0 450 37.8
Cc00_g03720 Coffea canephora HOM05D003999 ORTHO05D005219 1.6e-74 284.6 460 41.5
Nn8g40781 Nelumbo nucifera HOM05D003999 ORTHO05D005219 1.6e-74 284.6 316 47.8
MD16G1248600 Malus domestica HOM05D003999 ORTHO05D005219 3.5e-74 283.5 413 42.4
Thecc.10G174600 Theobroma cacao HOM05D003999 ORTHO05D005219 3.5e-74 283.5 490 39.0
TAR383G0399 Trochodendron aralioides HOM05D003999 ORTHO05D005219 6.0e-74 282.7 496 38.7
TWI34G1954 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 2.3e-73 280.8 460 41.3
Ca_15280_v3 Cicer arietinum L. HOM05D003999 ORTHO05D005219 3.9e-73 280.0 489 38.0
FAN04G0885 Fragaria x ananassa HOM05D003999 ORTHO05D005219 1.5e-72 278.1 408 42.4
Gorai.010G217300 Gossypium raimondii HOM05D003999 ORTHO05D005219 1.5e-72 278.1 469 38.4
Sc08g0004740 Simmondsia chinensis HOM05D003999 ORTHO05D005219 1.5e-72 278.1 289 47.4
Glyma.04G001900 Glycine max HOM05D003999 ORTHO05D005219 2.5e-72 277.3 483 37.1
Sabra06G0056300 Salix brachista HOM05D003999 ORTHO05D005219 7.3e-72 275.8 524 38.2
FAN13G0316 Fragaria x ananassa HOM05D003999 ORTHO05D005219 9.5e-72 275.4 483 38.7
Lj1g0014223 Lotus japonicus HOM05D003999 ORTHO05D005219 1.2e-71 275.0 463 36.9
Gohir.A06G176100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 1.6e-71 274.6 469 38.4
Gohir.D06G185700 Gossypium hirsutum HOM05D003999 ORTHO05D005219 2.1e-71 274.2 468 38.0
FAN18G4269 Fragaria x ananassa HOM05D003999 ORTHO05D005219 2.8e-71 273.9 477 39.8
Duzib114G0910 Durio zibethinus HOM05D003999 ORTHO05D005219 3.6e-71 273.5 489 37.2
SGA_v2.0_scaffold231G43410 Striga asiatica HOM05D003999 ORTHO05D005219 3.6e-71 273.5 301 46.2
Haze_22020 Corylus avellana HOM05D003999 ORTHO05D005219 1.1e-70 271.9 480 37.7
EL10Ac8g19270 Beta vulgaris HOM05D003999 ORTHO05D005219 1.2e-69 268.5 335 44.8
Glyma.06G001400 Glycine max HOM05D003999 ORTHO05D005219 1.2e-69 268.5 483 36.9
ECA240G0372 Erigeron canadensis HOM05D003999 ORTHO05D005219 2.0e-69 267.7 478 38.1
DCAR_018034 Daucus carota HOM05D003999 ORTHO05D005219 2.6e-69 267.3 340 42.6
Hund06701 Selenicereus undatus HOM05D003999 ORTHO05D005219 2.6e-69 267.3 489 36.8
CSS0017119 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 5.8e-69 266.2 450 40.7
Gorai.011G210800 Gossypium raimondii HOM05D003999 ORTHO05D005219 7.6e-69 265.8 488 37.1
Duzib106G1697 Durio zibethinus HOM05D003999 ORTHO05D005219 1.3e-68 265.0 324 44.8
Lalb_Chr11g0061221 Lupinus albus HOM05D003999 ORTHO05D005219 2.2e-68 264.2 493 36.5
TAR626G1281 Trochodendron aralioides HOM05D003999 ORTHO05D005219 2.2e-68 264.2 326 45.7
COL.COLO4_08503 Corchorus olitorius HOM05D003999 ORTHO05D005219 2.9e-68 263.8 513 36.5
Sabra18G0116200 Salix brachista HOM05D003999 ORTHO05D005219 2.9e-68 263.8 447 38.7
AUR62031249 Chenopodium quinoa HOM05D003999 ORTHO05D005219 3.7e-68 263.5 292 46.6
Psat5g048320 Pisum sativum HOM05D003999 ORTHO05D005219 3.7e-68 263.5 489 36.8
DCAR_020148 Daucus carota HOM05D003999 ORTHO05D005219 6.4e-68 262.7 405 40.2
Potri.006G075400 Populus trichocarpa HOM05D003999 ORTHO05D005219 6.4e-68 262.7 437 39.4
DCAR_014666 Daucus carota HOM05D003999 ORTHO05D005219 1.4e-67 261.5 306 47.7
Gohir.D10G188000 Gossypium hirsutum HOM05D003999 ORTHO05D005219 1.9e-67 261.2 454 37.7
AUR62027455 Chenopodium quinoa HOM05D003999 ORTHO05D005219 4.1e-67 260.0 400 39.5
Eucgr.C02221 Eucalyptus grandis HOM05D003999 ORTHO05D005219 4.1e-67 260.0 398 40.2
Phvul.009G117100 Phaseolus vulgaris HOM05D003999 ORTHO05D005219 5.4e-67 259.6 438 37.7
Aqoxy7G02806 Aquilegia oxysepala HOM05D003999 ORTHO05D005219 7.1e-67 259.2 468 35.9
Medtr3g100350 Medicago truncatula HOM05D003999 ORTHO05D005219 3.5e-66 256.9 458 37.3
VMungo1309G0585 Vigna mungo HOM05D003999 ORTHO05D005219 1.3e-65 255.0 478 35.4
Potri.018G142300 Populus trichocarpa HOM05D003999 ORTHO05D005219 2.5e-64 250.8 422 37.9
arahy.Tifrunner.gnm1.ann1.K74ZDU Arachis hypogaea HOM05D003999 ORTHO05D005219 2.8e-63 247.3 491 34.6
unitig_578.g16064 Utricularia gibba HOM05D003999 ORTHO05D005219 6.2e-63 246.1 438 36.3
HanXRQChr09g0244721 Helianthus annuus HOM05D003999 ORTHO05D005219 6.8e-62 242.7 334 43.1
Actinidia27131 Actinidia chinensis HOM05D003999 ORTHO05D005219 1.2e-61 241.9 413 40.2
unitig_8.g4939 Utricularia gibba HOM05D003999 ORTHO05D005219 1.5e-61 241.5 446 36.5
Gohir.A10G181100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 2.0e-61 241.1 488 35.9
FAN08G2100 Fragaria x ananassa HOM05D003999 ORTHO05D005219 3.2e-59 233.8 408 38.7
arahy.Tifrunner.gnm1.ann1.M9AABA Arachis hypogaea HOM05D003999 ORTHO05D005219 1.6e-58 231.5 505 33.9
FvH4_5g27730 Fragaria vesca HOM05D003999 ORTHO05D005219 1.6e-58 231.5 477 36.9
TPR.G6349 Trifolium pratense HOM05D003999 ORTHO05D005219 2.3e-57 227.6 531 32.6
PSO170G0656 Papaver somniferum HOM05D003999 ORTHO05D005219 1.9e-56 224.6 308 42.5
THA.LOC104814650 Tarenaya hassleriana HOM05D003999 ORTHO05D005219 9.6e-56 222.2 331 39.3
CiPaw.08G032500 Carya illinoinensis HOM05D003999 ORTHO05D005219 1.3e-55 221.9 279 44.1
SalBow5G4070 Salvia bowleyana HOM05D003999 ORTHO05D005219 1.6e-55 221.5 403 37.2
MBI16_g05835_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 1.4e-54 218.4 491 34.0
MBI13_g34042_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 3.4e-53 213.8 322 42.2
Haze_18974 Corylus avellana HOM05D003999 ORTHO05D005219 4.4e-53 213.4 409 35.5
Lsat_1_v5_gn_7_51121 Lactuca sativa HOM05D003999 ORTHO05D005219 1.3e-52 211.8 286 43.0
ATR0681G357 Amborella trichopoda HOM05D003999 ORTHO05D005219 4.9e-52 209.9 338 39.6
Migut.J00798 Erythranthe guttata HOM05D003999 ORTHO05D005219 4.9e-52 209.9 303 40.9
ATR0626G364 Amborella trichopoda HOM05D003999 ORTHO05D005219 4.6e-50 203.4 472 33.5
Haze_18980 Corylus avellana HOM05D003999 ORTHO05D005219 7.9e-50 202.6 454 33.9
Potri.006G277400 Populus trichocarpa HOM05D003999 ORTHO05D005219 7.9e-50 202.6 280 36.8
Zm00001eb002000 Zea mays HOM05D003999 ORTHO05D005219 1.0e-49 202.2 268 42.5
CiPaw.15G150400 Carya illinoinensis HOM05D003999 ORTHO05D005219 2.3e-49 201.1 238 42.9
Thecc.09G004800 Theobroma cacao HOM05D003999 ORTHO05D005219 3.9e-49 200.3 400 33.2
Ciclev10008331m.g Citrus clementina HOM05D003999 ORTHO05D005219 6.6e-49 199.5 349 35.8
Atru.chr7.2670 Acer truncatum HOM05D003999 ORTHO05D005219 5.6e-48 196.4 423 32.9
Oeu064556.1 Olea europaea HOM05D003999 ORTHO05D005219 1.3e-47 195.3 307 39.4
Cfa020676 Carpinus fangiana HOM05D003999 ORTHO05D005219 2.6e-45 187.6 241 44.0
CDE06G2299 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 9.9e-45 185.7 204 46.6
Os04g0425100 Oryza sativa ssp. japonica HOM05D003999 ORTHO05D005219 4.9e-44 183.3 264 42.4
Sabra06G0215100 Salix brachista HOM05D003999 ORTHO05D005219 4.9e-44 183.3 283 36.0
CDE02G3353 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 2.4e-43 181.0 200 46.5
Zm00001eb274650 Zea mays HOM05D003999 ORTHO05D005219 4.2e-43 180.3 302 35.8
A07p01530 Brassica napus HOM05D003999 ORTHO05D005219 1.1e-40 172.2 206 45.1
BraA07t27954Z Brassica rapa HOM05D003999 ORTHO05D005219 1.1e-40 172.2 206 45.1
Thhalv10022602m.g Eutrema salsugineum HOM05D003999 ORTHO05D005219 2.8e-39 167.5 307 35.2
BolC9t54356H Brassica oleracea HOM05D003999 ORTHO05D005219 1.1e-38 165.6 197 42.1
BcaC04g22860 Brassica carinata HOM05D003999 ORTHO05D005219 2.4e-38 164.5 197 42.1
C09p14530 Brassica napus HOM05D003999 ORTHO05D005219 2.4e-38 164.5 197 42.1
GSVIVG01010859001 Vitis vinifera HOM05D003999 ORTHO05D005219 2.4e-38 164.5 121 61.2
AL3G49030 Arabidopsis lyrata HOM05D003999 ORTHO05D005219 6.9e-38 162.9 197 43.7
BcaB03g16715 Brassica carinata HOM05D003999 ORTHO05D005219 9.0e-38 162.5 223 41.3
BcaB07g31614 Brassica carinata HOM05D003999 ORTHO05D005219 9.0e-38 162.5 214 39.7
Carub.0003s3349 Capsella rubella HOM05D003999 ORTHO05D005219 1.5e-37 161.8 266 36.8
Sp3g32620 Schrenkiella parvula HOM05D003999 ORTHO05D005219 2.0e-37 161.4 197 43.1
C07p03110 Brassica napus HOM05D003999 ORTHO05D005219 4.5e-37 160.2 197 43.1
BolC7t40703H Brassica oleracea HOM05D003999 ORTHO05D005219 4.5e-37 160.2 197 43.1
CARHR109720 Cardamine hirsuta HOM05D003999 ORTHO05D005219 5.8e-37 159.8 197 42.1
BcaC06g36543 Brassica carinata HOM05D003999 ORTHO05D005219 1.0e-36 159.1 197 42.6
AT2G19260 Arabidopsis thaliana HOM05D003999 ORTHO05D005219 1.4e-35 155.2 309 35.0
ECA234G1030 Erigeron canadensis HOM05D003999 ORTHO05D005219 7.9e-34 149.4 138 52.9
MSTRG.10441 Avicennia marina HOM05D003999 ORTHO05D005219 1.3e-33 148.7 283 37.5
Aa31LG8G16300 Aethionema arabicum HOM05D003999 ORTHO05D005219 8.2e-31 139.4 211 35.5
SEGI_29375 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 9.0e-30 136.0 295 34.6
Mapoly0046s0104 Marchantia polymorpha HOM05D003999 ORTHO05D005219 1.2e-26 125.6 245 33.5
HPP92_010790 Vanilla planifolia HOM05D003999 ORTHO05D005219 1.3e-25 122.1 225 34.2
ClCG06G013610 Citrullus lanatus HOM05D003999 ORTHO05D005219 1.8e-25 121.7 78 66.7
SEGI_05476 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 1.8e-25 121.7 226 33.2
MSTRG.10442 Avicennia marina HOM05D003999 ORTHO05D005219 3.9e-25 120.6 63 77.8
SMO117G0282 Selaginella moellendorffii HOM05D003999 ORTHO05D005219 2.2e-23 114.8 256 30.5
PGR044G2313 Punica granatum HOM05D003999 ORTHO05D005219 8.2e-23 112.8 307 32.2
MBI16_g10833_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 5.3e-22 110.2 281 32.7
GSVIVG01035550001 Vitis vinifera HOM05D003999 ORTHO05D005219 2.7e-18 97.8 64 60.9
Prupe.5G240400 Prunus persica HOM05D003999 ORTHO05D005219 4.6e-18 97.1 172 35.5
RcHm_v2.0_Chr7g0177591 Rosa chinensis HOM05D003999 ORTHO05D005219 1.4e-17 95.5 160 35.0
FAN18G0538 Fragaria x ananassa HOM05D003999 ORTHO05D005219 1.5e-16 92.0 151 35.8
FvH4_5g18011 Fragaria vesca HOM05D003999 ORTHO05D005219 4.4e-16 90.5 151 36.4
MD06G1235600 Malus domestica HOM05D003999 ORTHO05D005219 7.4e-16 89.7 152 36.2
Cfa020674 Carpinus fangiana HOM05D003999 ORTHO05D005219 9.7e-16 89.4 79 53.2
FAN13G0118 Fragaria x ananassa HOM05D003999 ORTHO05D005219 9.7e-16 89.4 159 34.0
Manes.03G002401 Manihot esculenta HOM05D003999 ORTHO05D005219 4.8e-15 87.0 146 36.3
SEGI_17596 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 2.9e-12 77.8 214 29.9
Phvul.007G142700 Phaseolus vulgaris HOM05D003999 ORTHO05D005219 2.7e-10 71.2 160 30.0
Carub.0003s3352 Capsella rubella HOM05D003999 ORTHO05D005219 4.4e-08 63.9 80 40.0
A07p28070 Brassica napus HOM05D004258 ORTHO05D005163 1.3e-07 62.4 164 28.7
BraA07t30452Z Brassica rapa HOM05D004258 ORTHO05D005163 1.3e-07 62.4 164 28.7
CARHR070720 Cardamine hirsuta HOM05D004258 ORTHO05D005163 3.7e-07 60.8 203 25.6
BraA07t31801Z Brassica rapa HOM05D004258 ORTHO05D005163 4.8e-07 60.5 59 42.4
Thhalv10018403m.g Eutrema salsugineum HOM05D004258 ORTHO05D005163 1.4e-06 58.9 177 27.1
A07p42810 Brassica napus HOM05D004258 ORTHO05D005163 1.8e-06 58.5 90 34.4
A09p12320 Brassica napus HOM05D003999 ORTHO05D005219 1.8e-06 58.5 50 50.0
C06p51420 Brassica napus HOM05D004258 ORTHO05D005163 1.8e-06 58.5 90 34.4
BolC6t40160H Brassica oleracea HOM05D004258 ORTHO05D005163 1.8e-06 58.5 89 34.8
BraA09t36876Z Brassica rapa HOM05D003999 ORTHO05D005219 1.8e-06 58.5 50 50.0
Migut.C01074 Erythranthe guttata HOM05D004258 ORTHO05D005163 1.8e-06 58.5 76 38.2
Sopen04g026090 Solanum pennellii HOM05D004258 ORTHO05D005163 1.8e-06 58.5 86 39.5
PGSC0003DMG400018006 Solanum tuberosum HOM05D004258 ORTHO05D005163 2.4e-06 58.2 86 39.5
CANSAT25G3602 Cannabis sativa HOM05D004258 ORTHO05D005163 3.1e-06 57.8 78 34.6
PSO675G4589 Papaver somniferum HOM05D007740 ORTHO05D009757 3.1e-06 57.8 51 43.1
Nitab4.5_0002625g0020 Nicotiana tabacum HOM05D004258 ORTHO05D005163 4.1e-06 57.4 79 36.7
Solyc04g058190.3 Solanum lycopersicum HOM05D004258 ORTHO05D005163 4.1e-06 57.4 86 38.4
TWI39G0734 Tripterygium wilfordii HOM05D002415 ORTHO05D002522 4.1e-06 57.4 64 40.6
Aa31LG4G7240 Aethionema arabicum HOM05D004258 ORTHO05D005163 5.3e-06 57.0 167 28.1
BcaNung04998 Brassica carinata HOM05D004258 ORTHO05D005163 5.3e-06 57.0 77 35.1
Nitab4.5_0008327g0020 Nicotiana tabacum HOM05D004258 ORTHO05D005163 5.3e-06 57.0 79 36.7
THA.LOC104813686 Tarenaya hassleriana HOM05D004258 ORTHO05D005163 9.1e-06 56.2 95 34.7


User provided reference genes

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