Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g069460.3 Solanum lycopersicum HOM05D005291 ORTHO05D006556 2.9e-123 445.3 229 100.0
Sopen02g018590 Solanum pennellii HOM05D005291 ORTHO05D006556 4.2e-122 441.4 229 96.5
Sopen02g018600 Solanum pennellii HOM05D005291 ORTHO05D006556 9.3e-122 440.3 229 97.8
Solyc02g069450.3 Solanum lycopersicum HOM05D005291 ORTHO05D006556 1.3e-120 436.4 229 97.8
PGSC0003DMG400021144 Solanum tuberosum HOM05D005291 ORTHO05D006556 8.7e-120 433.7 229 95.2
CAN.G675.17 Capsicum annuum HOM05D005291 ORTHO05D006556 3.5e-113 411.8 229 90.0
CAN.G675.15 Capsicum annuum HOM05D005291 ORTHO05D006556 3.3e-111 405.2 230 89.1
SGA_v2.0_scaffold298G47643 Striga asiatica HOM05D005291 ORTHO05D006556 3.9e-104 381.7 229 83.8
MSTRG.7576 Avicennia marina HOM05D005291 ORTHO05D006556 5.1e-104 381.3 230 82.2
MSTRG.16324 Avicennia marina HOM05D005291 ORTHO05D006556 2.5e-103 379.0 231 83.1
Migut.M01951 Erythranthe guttata HOM05D005291 ORTHO05D006556 1.6e-102 376.3 229 81.7
Cc09_g06610 Coffea canephora HOM05D005291 ORTHO05D006556 8.2e-102 374.0 231 81.8
Peaxi162Scf00267g01017 Petunia axillaris HOM05D005291 ORTHO05D006556 1.4e-101 373.2 229 83.8
unitig_92.g28186 Utricularia gibba HOM05D005291 ORTHO05D006556 1.4e-101 373.2 229 80.3
Oeu008978.1 Olea europaea HOM05D005291 ORTHO05D006556 1.8e-101 372.9 230 80.9
Lj1A1140T41 Lonicera japonica HOM05D005291 ORTHO05D006556 2.6e-100 369.0 230 80.9
Dinv01911 Davidia involucrata HOM05D005291 ORTHO05D006556 1.3e-99 366.7 232 79.3
SGA_v2.0_scaffold223G42900 Striga asiatica HOM05D005291 ORTHO05D006556 7.9e-97 357.5 230 80.9
Aqoxy1G01510 Aquilegia oxysepala HOM05D005291 ORTHO05D006556 3.9e-96 355.1 229 79.9
QL05p062860 Quercus lobata HOM05D005291 ORTHO05D006556 1.8e-93 346.3 228 77.6
Thecc.06G135600 Theobroma cacao HOM05D005291 ORTHO05D006556 5.3e-93 344.7 229 76.9
Nn7g37951 Nelumbo nucifera HOM05D005291 ORTHO05D006556 6.9e-93 344.4 229 77.7
CiPaw.10G112100 Carya illinoinensis HOM05D005291 ORTHO05D006556 1.5e-92 343.2 229 75.1
Prupe.4G105600 Prunus persica HOM05D005291 ORTHO05D006556 2.6e-92 342.4 230 75.7
TWI09G0987 Tripterygium wilfordii HOM05D005291 ORTHO05D006556 7.7e-92 340.9 229 75.5
Cpa.g.sc882.3 Carica papaya HOM05D005291 ORTHO05D006556 1.0e-91 340.5 229 77.3
TAR626G0502 Trochodendron aralioides HOM05D005291 ORTHO05D006556 1.3e-91 340.1 224 79.5
RcHm_v2.0_Chr5g0019221 Rosa chinensis HOM05D005291 ORTHO05D006556 1.7e-91 339.7 229 76.0
TWI73G1099 Tripterygium wilfordii HOM05D005291 ORTHO05D006556 2.2e-91 339.3 229 75.1
Duzib235G0861 Durio zibethinus HOM05D005291 ORTHO05D006556 2.9e-91 339.0 230 77.4
Gohir.A05G143600 Gossypium hirsutum HOM05D005291 ORTHO05D006556 2.9e-91 339.0 229 75.5
HanXRQChr17g0563071 Helianthus annuus HOM05D005291 ORTHO05D006556 2.9e-91 339.0 233 76.0
Eucgr.K00389 Eucalyptus grandis HOM05D005291 ORTHO05D006556 3.8e-91 338.6 229 74.2
Hma1.2p1_0326F.1_g126220 Hydrangea macrophylla HOM05D005291 ORTHO05D006556 3.8e-91 338.6 229 77.3
Lj6g0012734 Lotus japonicus HOM05D005291 ORTHO05D006556 3.8e-91 338.6 229 74.7
Haze_21115 Corylus avellana HOM05D005291 ORTHO05D006556 5.0e-91 338.2 232 76.3
Manes.16G056000 Manihot esculenta HOM05D005291 ORTHO05D006556 5.0e-91 338.2 233 74.7
HanXRQChr12g0368521 Helianthus annuus HOM05D005291 ORTHO05D006556 6.5e-91 337.8 231 74.9
Haze_21121 Corylus avellana HOM05D005291 ORTHO05D006556 8.5e-91 337.4 232 76.3
FAN21G3936 Fragaria x ananassa HOM05D005291 ORTHO05D006556 8.5e-91 337.4 229 75.1
FAN25G3276 Fragaria x ananassa HOM05D005291 ORTHO05D006556 8.5e-91 337.4 229 75.1
Gorai.010G170600 Gossypium raimondii HOM05D005291 ORTHO05D006556 8.5e-91 337.4 229 76.0
Potri.001G081500 Populus trichocarpa HOM05D005291 ORTHO05D006556 8.5e-91 337.4 230 77.4
COL.COLO4_30928 Corchorus olitorius HOM05D005291 ORTHO05D006556 1.1e-90 337.0 229 76.0
Duzib160G0628 Durio zibethinus HOM05D005291 ORTHO05D006556 1.1e-90 337.0 231 77.1
Medtr2g029370 Medicago truncatula HOM05D005291 ORTHO05D006556 1.1e-90 337.0 229 76.0
Sabra01G0058700 Salix brachista HOM05D005291 ORTHO05D006556 1.1e-90 337.0 230 77.4
Gohir.A06G138900 Gossypium hirsutum HOM05D005291 ORTHO05D006556 1.4e-90 336.7 231 75.3
Gohir.D05G145900 Gossypium hirsutum HOM05D005291 ORTHO05D006556 1.4e-90 336.7 229 75.1
Gorai.009G149800 Gossypium raimondii HOM05D005291 ORTHO05D006556 1.4e-90 336.7 229 75.1
Lsat_1_v5_gn_6_37081 Lactuca sativa HOM05D005291 ORTHO05D006556 1.4e-90 336.7 233 76.0
Gohir.D06G146300 Gossypium hirsutum HOM05D005291 ORTHO05D006556 2.5e-90 335.9 229 75.5
arahy.Tifrunner.gnm1.ann1.PX7M3V Arachis hypogaea HOM05D005291 ORTHO05D006556 3.2e-90 335.5 234 76.5
FvH4_3g11800 Fragaria vesca HOM05D005291 ORTHO05D006556 3.2e-90 335.5 229 74.7
Sed0015115 Sechium edule HOM05D005291 ORTHO05D006556 7.2e-90 334.3 229 74.7
Sed0028144 Sechium edule HOM05D005291 ORTHO05D006556 7.2e-90 334.3 229 75.1
CANSAT35G1185 Cannabis sativa HOM05D005291 ORTHO05D006556 9.4e-90 334.0 230 74.3
VMungo1215G2240 Vigna mungo HOM05D005291 ORTHO05D006556 9.4e-90 334.0 230 76.1
MD05G1259200 Malus domestica HOM05D005291 ORTHO05D006556 2.1e-89 332.8 230 73.5
vmacro03483 Vaccinium macrocarpon HOM05D005291 ORTHO05D006556 2.1e-89 332.8 233 72.5
Ciclev10016540m.g Citrus clementina HOM05D005291 ORTHO05D006556 3.6e-89 332.0 232 73.3
arahy.Tifrunner.gnm1.ann1.VHAI7W Arachis hypogaea HOM05D005291 ORTHO05D006556 7.9e-89 330.9 229 76.9
MELO3C021788.2 Cucumis melo HOM05D005291 ORTHO05D006556 1.0e-88 330.5 229 75.1
Lalb_Chr18g0057801 Lupinus albus HOM05D005291 ORTHO05D006556 1.4e-88 330.1 236 75.8
MD10G1238800 Malus domestica HOM05D005291 ORTHO05D006556 1.8e-88 329.7 233 73.0
PSO017G5348 Papaver somniferum HOM05D005291 ORTHO05D006556 2.3e-88 329.3 226 77.9
CsaV3_1G046680 Cucumis sativus L. HOM05D005291 ORTHO05D006556 3.0e-88 328.9 229 77.3
Phvul.L001631 Phaseolus vulgaris HOM05D005291 ORTHO05D006556 3.9e-88 328.6 232 75.0
CiPaw.09G150600 Carya illinoinensis HOM05D005291 ORTHO05D006556 5.1e-88 328.2 229 72.9
PSO170G0936 Papaver somniferum HOM05D005291 ORTHO05D006556 5.1e-88 328.2 226 78.3
Rhsim13G0127200 Rhododendron simsii HOM05D005291 ORTHO05D006556 5.1e-88 328.2 232 73.7
CDE05G2870 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 6.7e-88 327.8 226 76.1
THA.LOC104814370 Tarenaya hassleriana HOM05D005291 ORTHO05D006556 6.7e-88 327.8 230 75.7
Atru.chr10.620 Acer truncatum HOM05D005291 ORTHO05D006556 2.5e-87 325.9 229 74.2
CDE01G0253 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 3.3e-87 325.5 225 75.1
Thhalv10008731m.g Eutrema salsugineum HOM05D005291 ORTHO05D006556 4.3e-87 325.1 229 74.2
CARHR030790 Cardamine hirsuta HOM05D005291 ORTHO05D006556 5.7e-87 324.7 229 74.2
AUR62013057 Chenopodium quinoa HOM05D005291 ORTHO05D006556 7.4e-87 324.3 236 73.7
Nitab4.5_0008761g0030 Nicotiana tabacum HOM05D005291 ORTHO05D006556 9.7e-87 323.9 227 76.2
AL1G49710 Arabidopsis lyrata HOM05D005291 ORTHO05D006556 1.3e-86 323.6 229 75.5
AT1G31330 Arabidopsis thaliana HOM05D005291 ORTHO05D006556 1.3e-86 323.6 229 74.2
Actinidia33638 Actinidia chinensis HOM05D005291 ORTHO05D006556 1.7e-86 323.2 231 73.6
CDE12G0048 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 2.2e-86 322.8 226 74.8
AUR62010064 Chenopodium quinoa HOM05D005291 ORTHO05D006556 2.8e-86 322.4 236 73.7
TPR.G26533 Trifolium pratense HOM05D005291 ORTHO05D006556 3.7e-86 322.0 231 73.2
BcaC05g27163 Brassica carinata HOM05D005291 ORTHO05D006556 4.8e-86 321.6 229 73.4
A09p34920 Brassica napus HOM05D005291 ORTHO05D006556 4.8e-86 321.6 229 73.4
BolC5t31789H Brassica oleracea HOM05D005291 ORTHO05D006556 4.8e-86 321.6 229 73.4
BraA09t39022Z Brassica rapa HOM05D005291 ORTHO05D006556 4.8e-86 321.6 229 73.4
Ah.01g022810 Amaranthus hybridus HOM05D005291 ORTHO05D006556 6.3e-86 321.2 232 72.4
BcaB07g32794 Brassica carinata HOM05D005291 ORTHO05D006556 8.2e-86 320.9 229 72.9
Sc10g0008690 Simmondsia chinensis HOM05D005291 ORTHO05D006556 8.2e-86 320.9 229 70.7
BcaB04g18162 Brassica carinata HOM05D005291 ORTHO05D006556 1.1e-85 320.5 230 73.9
C05p30540 Brassica napus HOM05D005291 ORTHO05D006556 1.4e-85 320.1 229 72.9
Aa31LG9G15960 Aethionema arabicum HOM05D005291 ORTHO05D006556 2.4e-85 319.3 229 72.9
Psat1g169240 Pisum sativum HOM05D005291 ORTHO05D006556 2.4e-85 319.3 179 87.2
Ah.01g008620 Amaranthus hybridus HOM05D005291 ORTHO05D006556 3.1e-85 318.9 234 71.8
Glyma.05G022900 Glycine max HOM05D005291 ORTHO05D006556 3.1e-85 318.9 229 73.4
BcaC07g37765 Brassica carinata HOM05D005291 ORTHO05D006556 4.1e-85 318.5 229 72.1
BolC8t48151H Brassica oleracea HOM05D005291 ORTHO05D006556 4.1e-85 318.5 229 72.1
BraA08t33062Z Brassica rapa HOM05D005291 ORTHO05D006556 4.1e-85 318.5 229 73.4
Carub.0001s2977 Capsella rubella HOM05D005291 ORTHO05D006556 4.1e-85 318.5 229 72.9
A08p10630 Brassica napus HOM05D005291 ORTHO05D006556 5.3e-85 318.2 229 72.9
Sp1g27160 Schrenkiella parvula HOM05D005291 ORTHO05D006556 6.9e-85 317.8 224 73.2
EL10Ac9g21406 Beta vulgaris HOM05D005291 ORTHO05D006556 2.0e-84 316.2 234 72.2
CDE02G3915 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 4.5e-84 315.1 226 74.8
ECA234G0485 Erigeron canadensis HOM05D005291 ORTHO05D006556 4.5e-84 315.1 217 75.1
A07p09430 Brassica napus HOM05D005291 ORTHO05D006556 2.9e-83 312.4 229 71.6
BraA07t28739Z Brassica rapa HOM05D005291 ORTHO05D006556 2.9e-83 312.4 229 71.6
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 5.0e-83 311.6 237 70.0
C07p14510 Brassica napus HOM05D005291 ORTHO05D006556 1.1e-82 310.5 179 84.4
BolC7t41950H Brassica oleracea HOM05D005291 ORTHO05D006556 6.1e-81 304.7 229 69.9
Ca_00782_v3 Cicer arietinum L. HOM05D005291 ORTHO05D006556 1.4e-80 303.5 229 71.2
Ca_31080_v3 Cicer arietinum L. HOM05D005291 ORTHO05D006556 1.4e-80 303.5 229 71.2
ATR0763G286 Amborella trichopoda HOM05D005291 ORTHO05D006556 1.7e-78 296.6 174 80.5
Cfa000743 Carpinus fangiana HOM05D005291 ORTHO05D006556 8.2e-78 294.3 156 89.1
Oeu008714.1 Olea europaea HOM05D005291 ORTHO05D006556 8.2e-78 294.3 230 68.3
HPP92_017743 Vanilla planifolia HOM05D005291 ORTHO05D006556 2.4e-77 292.7 224 69.2
ClCG01G009000 Citrullus lanatus HOM05D005291 ORTHO05D006556 7.0e-77 291.2 203 74.9
Actinidia29307 Actinidia chinensis HOM05D005291 ORTHO05D006556 2.6e-76 289.3 231 68.0
Zm00001eb213670 Zea mays HOM05D005291 ORTHO05D006556 6.5e-75 284.6 187 75.9
Nitab4.5_0001312g0020 Nicotiana tabacum HOM05D005291 ORTHO05D006556 8.5e-75 284.3 227 68.3
Os03g0778100 Oryza sativa ssp. japonica HOM05D005291 ORTHO05D006556 1.0e-72 277.3 176 77.8
SMO367G0762 Selaginella moellendorffii HOM05D005291 ORTHO05D006556 1.6e-65 253.4 174 70.1
Pp3c22_10850 Physcomitrium patens HOM05D005291 ORTHO05D006556 2.6e-63 246.1 203 62.6
Pp3c21_8800 Physcomitrium patens HOM05D005291 ORTHO05D006556 1.3e-62 243.8 227 56.4
Pp3c11_18230 Physcomitrium patens HOM05D005291 ORTHO05D006556 1.7e-62 243.4 222 58.6
Pp3c18_10730 Physcomitrium patens HOM05D005291 ORTHO05D006556 2.4e-61 239.6 225 55.6
Mapoly0075s0057 Marchantia polymorpha HOM05D005291 ORTHO05D006556 9.1e-61 237.7 232 54.7
AagrBONN_evm.TU.Sc2ySwM_344.4326 Anthoceros agrestis HOM05D005291 ORTHO05D006556 5.0e-59 231.9 157 69.4
CBR_g568 Chara braunii HOM05D005291 ORTHO05D006556 2.1e-57 226.5 214 55.1
Potri.003G148900 Populus trichocarpa HOM05D005291 ORTHO05D006556 3.5e-52 209.1 144 77.8
Solyc08g074307.2 Solanum lycopersicum HOM05D005291 ORTHO05D006556 1.4e-48 197.2 126 90.5
Cre09.g412100 Chlamydomonas reinhardtii HOM05D005291 ORTHO05D006556 8.3e-46 188.0 213 48.8
MCO07G173 Micromonas commoda HOM05D005291 ORTHO05D006556 9.2e-45 184.5 226 46.5
CDE12G0451 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 2.6e-39 166.4 152 64.5
Nitab4.5_0001219g0180 Nicotiana tabacum HOM05D005291 ORTHO05D006556 9.8e-39 164.5 127 76.4
PRCOL_00005797 Prasinoderma coloniale HOM05D005291 ORTHO05D006556 9.2e-37 157.9 175 49.1
Lalb_Chr20g0119941 Lupinus albus HOM05D005291 ORTHO05D006556 6.4e-30 135.2 77 72.7
Nitab4.5_0005250g0030 Nicotiana tabacum HOM05D005291 ORTHO05D006556 8.6e-27 124.8 109 72.5
BcaC03g16812 Brassica carinata HOM05D005291 ORTHO05D006556 8.3e-22 108.2 57 82.5
arahy.Tifrunner.gnm1.ann1.7UV7DW Arachis hypogaea HOM05D005291 ORTHO05D083431 3.2e-21 106.3 141 48.9
HanXRQChr16g0517321 Helianthus annuus HOM05D005291 ORTHO05D006556 2.1e-09 67.0 44 75.0


User provided reference genes

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