Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g068420.4 Solanum lycopersicum HOM05D002744 ORTHO05D006546 4.1e-254 880.9 459 100.0
Sopen02g017560 Solanum pennellii HOM05D002744 ORTHO05D006546 2.1e-194 682.6 361 99.7
PGSC0003DMG400009431 Solanum tuberosum HOM05D002744 ORTHO05D006546 1.7e-191 672.9 361 98.3
PGSC0003DMG400024457 Solanum tuberosum HOM05D002744 ORTHO05D006546 1.4e-180 636.7 362 92.8
Nitab4.5_0000928g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 3.1e-169 599.0 361 88.9
Nitab4.5_0000263g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 2.0e-163 579.7 397 81.4
Peaxi162Scf00284g00133 Petunia axillaris HOM05D002744 ORTHO05D006546 1.6e-152 543.5 361 83.1
Cc02_g05710 Coffea canephora HOM05D002744 ORTHO05D006546 5.6e-142 508.4 365 76.2
Dinv21810 Davidia involucrata HOM05D002744 ORTHO05D006546 1.0e-135 487.6 365 72.3
MSTRG.5049 Avicennia marina HOM05D002744 ORTHO05D006546 9.5e-134 481.1 370 71.1
Actinidia00987 Actinidia chinensis HOM05D002744 ORTHO05D006546 6.8e-132 474.9 361 72.3
CSS0032617 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 3.4e-131 472.6 366 71.6
SGA_v2.0_scaffold5G02937 Striga asiatica HOM05D000129 ORTHO05D000144 8.3e-130 468.0 365 70.7
Rhsim09G0183300 Rhododendron simsii HOM05D002744 ORTHO05D006546 3.2e-129 466.1 390 67.4
Hma1.2p1_1240F.1_g269620 Hydrangea macrophylla HOM05D002744 ORTHO05D006546 3.5e-128 462.6 364 69.5
vmacro09982 Vaccinium macrocarpon HOM05D002744 ORTHO05D006546 7.8e-128 461.5 381 67.2
MBI16_g02735_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D006546 1.8e-124 450.3 367 65.9
Nn2g11076 Nelumbo nucifera HOM05D002744 ORTHO05D006546 1.8e-124 450.3 364 66.8
GSVIVG01032722001 Vitis vinifera HOM05D002744 ORTHO05D006546 1.8e-124 450.3 365 68.2
ECA238G3482 Erigeron canadensis HOM05D002744 ORTHO05D006546 2.3e-124 449.9 364 67.6
Migut.N01809 Erythranthe guttata HOM05D002744 ORTHO05D006546 1.2e-123 447.6 369 66.9
DCAR_011892 Daucus carota HOM05D002744 ORTHO05D006546 4.4e-123 445.7 364 66.5
CiPaw.02G197400 Carya illinoinensis HOM05D002744 ORTHO05D006546 5.8e-123 445.3 367 66.5
TAR623G1472 Trochodendron aralioides HOM05D002744 ORTHO05D006546 5.8e-123 445.3 362 68.8
QL08p064289 Quercus lobata HOM05D002744 ORTHO05D006546 1.7e-122 443.7 369 67.5
RcHm_v2.0_Chr1g0371491 Rosa chinensis HOM05D002744 ORTHO05D006546 1.7e-122 443.7 366 68.3
Actinidia07807 Actinidia chinensis HOM05D002744 ORTHO05D006546 2.2e-122 443.4 358 67.9
Eucgr.J00153 Eucalyptus grandis HOM05D002744 ORTHO05D006546 2.9e-122 443.0 362 69.1
Haze_17322 Corylus avellana HOM05D002744 ORTHO05D006546 1.9e-121 440.3 382 65.7
Duzib106G0255 Durio zibethinus HOM05D002744 ORTHO05D006546 2.4e-121 439.9 366 66.1
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 4.1e-121 439.1 364 68.1
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 9.2e-121 438.0 366 67.5
HanXRQChr10g0309081 Helianthus annuus HOM05D002744 ORTHO05D006546 1.6e-120 437.2 364 66.2
Lsat_1_v5_gn_2_125961 Lactuca sativa HOM05D002744 ORTHO05D006546 2.7e-120 436.4 360 66.4
Ca_06017_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 3.5e-120 436.0 362 65.7
Lj1C963G12 Lonicera japonica HOM05D002744 ORTHO05D006546 3.5e-120 436.0 360 65.6
CDE04G1223 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 4.6e-120 435.6 364 65.1
FvH4_7g25510 Fragaria vesca HOM05D002744 ORTHO05D006546 1.0e-119 434.5 365 66.3
Prupe.2G259600 Prunus persica HOM05D002744 ORTHO05D006546 1.7e-119 433.7 365 66.8
PGR044G1552 Punica granatum HOM05D002744 ORTHO05D006546 6.6e-119 431.8 365 64.9
Lalb_Chr17g0336941 Lupinus albus HOM05D002744 ORTHO05D006546 1.9e-118 430.3 366 65.0
MELO3C020109.2 Cucumis melo HOM05D002744 ORTHO05D006546 2.5e-118 429.9 363 64.7
Gohir.D10G253000 Gossypium hirsutum HOM05D002744 ORTHO05D006546 3.3e-118 429.5 362 65.2
MD07G1229400 Malus domestica HOM05D002744 ORTHO05D006546 4.3e-118 429.1 364 65.9
ClCG00G004700 Citrullus lanatus HOM05D002744 ORTHO05D006546 7.3e-118 428.3 363 65.0
ClCG06G010230 Citrullus lanatus HOM05D002744 ORTHO05D006546 7.3e-118 428.3 363 65.0
Glyma.02G230100 Glycine max HOM05D002744 ORTHO05D006546 9.5e-118 427.9 363 64.5
Sed0016960 Sechium edule HOM05D002744 ORTHO05D006546 1.6e-117 427.2 357 66.7
ClCG07G004810 Citrullus lanatus HOM05D002744 ORTHO05D006546 2.1e-117 426.8 363 64.5
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 2.1e-117 426.8 381 64.3
CsaV3_5G010730 Cucumis sativus L. HOM05D002744 ORTHO05D006546 4.7e-117 425.6 363 64.7
Gorai.011G293300 Gossypium raimondii HOM05D002744 ORTHO05D006546 4.7e-117 425.6 360 65.0
Ciclev10031901m.g Citrus clementina HOM05D002744 ORTHO05D006546 8.1e-117 424.9 361 65.4
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 8.1e-117 424.9 381 63.5
Thecc.10G007000 Theobroma cacao HOM05D002744 ORTHO05D006546 1.8e-116 423.7 366 64.5
HanXRQChr07g0186551 Helianthus annuus HOM05D002744 ORTHO05D006546 2.3e-116 423.3 366 64.5
Glyma.14G196400 Glycine max HOM05D002744 ORTHO05D006546 1.2e-115 421.0 360 63.3
VMungo0647G1938 Vigna mungo HOM05D002744 ORTHO05D006546 2.0e-115 420.2 365 63.3
Manes.07G139400 Manihot esculenta HOM05D002744 ORTHO05D006546 4.4e-115 419.1 368 64.7
LjContig00357g0012394 Lotus japonicus HOM05D002744 ORTHO05D006546 5.8e-115 418.7 364 63.7
Psat0s1511g0040 Pisum sativum HOM05D002744 ORTHO05D006546 7.6e-115 418.3 356 63.8
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 9.9e-115 417.9 359 65.2
Gohir.A10G240800 Gossypium hirsutum HOM05D002744 ORTHO05D006546 9.9e-115 417.9 362 64.4
Sc10g0002810 Simmondsia chinensis HOM05D002744 ORTHO05D006546 9.9e-115 417.9 364 63.7
CANSAT56G2377 Cannabis sativa HOM05D002744 ORTHO05D006546 2.9e-114 416.4 367 63.5
MD01G1161500 Malus domestica HOM05D002744 ORTHO05D006546 3.8e-114 416.0 364 64.6
Potri.008G075700 Populus trichocarpa HOM05D002744 ORTHO05D006546 4.9e-114 415.6 369 62.3
Hund13511 Selenicereus undatus HOM05D002744 ORTHO05D006546 1.4e-113 414.1 364 64.0
Lj1g0011333 Lotus japonicus HOM05D002744 ORTHO05D006546 4.1e-113 412.5 374 62.0
Aqoxy2G00754 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 5.4e-113 412.1 363 63.4
Phvul.008G258300 Phaseolus vulgaris HOM05D002744 ORTHO05D006546 2.7e-112 409.8 361 63.2
PSO210G7497 Papaver somniferum HOM05D002744 ORTHO05D006546 6.0e-112 408.7 377 62.1
PSO832G1082 Papaver somniferum HOM05D002744 ORTHO05D006546 7.8e-112 408.3 377 62.6
EL10Ac2g04290 Beta vulgaris HOM05D002744 ORTHO05D006546 2.3e-111 406.8 363 63.9
Ah.05g176210 Amaranthus hybridus HOM05D002744 ORTHO05D006546 6.6e-111 405.2 366 63.1
CAN.G39.17 Capsicum annuum HOM05D002744 ORTHO05D006546 1.8e-108 397.1 230 89.6
HPP92_001733 Vanilla planifolia HOM05D002744 ORTHO05D006546 5.2e-108 395.6 360 60.6
SalBow1G3835 Salvia bowleyana HOM05D002744 ORTHO05D006546 2.7e-104 383.3 343 64.7
AUR62012335 Chenopodium quinoa HOM05D002744 ORTHO05D006546 4.6e-104 382.5 362 61.9
THA.LOC104824347 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 4.6e-104 382.5 360 60.6
Sabra08G0056300 Salix brachista HOM05D002744 ORTHO05D006546 3.0e-103 379.8 430 53.5
THA.LOC104814944 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 8.7e-103 378.3 374 58.3
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 9.6e-102 374.8 339 62.5
AUR62022979 Chenopodium quinoa HOM05D002744 ORTHO05D006546 1.6e-101 374.0 367 61.0
TPR.G14721 Trifolium pratense HOM05D002744 ORTHO05D006546 4.8e-101 372.5 361 57.9
Os05g0144200 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D006546 2.4e-100 370.2 381 55.6
CARHR135540 Cardamine hirsuta HOM05D002744 ORTHO05D006546 2.6e-99 366.7 365 56.7
SalBow8G2269 Salvia bowleyana HOM05D002744 ORTHO05D006546 5.8e-99 365.5 374 59.1
SalBow8G4474 Salvia bowleyana HOM05D002744 ORTHO05D006546 2.2e-98 363.6 374 58.8
Thhalv10016839m.g Eutrema salsugineum HOM05D002744 ORTHO05D006546 8.4e-98 361.7 364 57.1
arahy.Tifrunner.gnm1.ann1.T368MT Arachis hypogaea HOM05D002744 ORTHO05D006546 1.2e-96 357.8 364 55.5
ATR1127G109 Amborella trichopoda HOM05D002744 ORTHO05D006546 2.7e-96 356.7 346 58.4
TWI56G0434 Tripterygium wilfordii HOM05D002744 ORTHO05D006546 1.8e-95 354.0 366 57.1
Zm00001eb417890 Zea mays HOM05D002744 ORTHO05D006546 2.3e-95 353.6 392 52.8
arahy.Tifrunner.gnm1.ann1.G9S3DZ Arachis hypogaea HOM05D002744 ORTHO05D006546 6.7e-95 352.1 364 54.7
Medtr5g083780 Medicago truncatula HOM05D002744 ORTHO05D006546 6.7e-95 352.1 363 56.5
SEGI_20256 Sequoiadendron giganteum HOM05D002744 ORTHO05D006546 8.7e-95 351.7 373 53.1
Aa31LG5G19130 Aethionema arabicum HOM05D002744 ORTHO05D006546 4.3e-94 349.4 365 55.3
Carub.0004s2268 Capsella rubella HOM05D002744 ORTHO05D006546 1.1e-92 344.7 382 52.9
Sp4g22770 Schrenkiella parvula HOM05D002744 ORTHO05D006546 1.1e-92 344.7 378 54.0
AL4G38260 Arabidopsis lyrata HOM05D002744 ORTHO05D006546 1.2e-91 341.3 429 48.7
CDE03G0451 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 7.6e-91 338.6 362 56.4
A05p01680 Brassica napus HOM05D002744 ORTHO05D006546 3.8e-90 336.3 388 51.5
BraA05t19165Z Brassica rapa HOM05D002744 ORTHO05D006546 6.4e-90 335.5 380 52.1
unitig_27.g25095 Utricularia gibba HOM05D002744 ORTHO05D006546 1.2e-88 331.3 353 56.1
BcaC02g12712 Brassica carinata HOM05D002744 ORTHO05D006546 2.7e-88 330.1 384 52.6
BcaB06g29140 Brassica carinata HOM05D002744 ORTHO05D006546 4.6e-88 329.3 384 53.4
C04p01940 Brassica napus HOM05D002744 ORTHO05D006546 6.9e-84 315.5 384 49.5
BolC4t21844H Brassica oleracea HOM05D002744 ORTHO05D006546 1.2e-83 314.7 380 50.0
C04p68230 Brassica napus HOM05D002744 ORTHO05D006546 4.2e-81 306.2 405 49.4
BolC4t28327H Brassica oleracea HOM05D002744 ORTHO05D006546 1.6e-80 304.3 381 50.9
BraA04t18540Z Brassica rapa HOM05D002744 ORTHO05D006546 2.7e-80 303.5 381 50.7
BcaC02g07313 Brassica carinata HOM05D002744 ORTHO05D006546 6.0e-80 302.4 379 49.6
A04p30810 Brassica napus HOM05D002744 ORTHO05D006546 7.9e-80 302.0 387 49.9
Oeu026182.1 Olea europaea HOM05D002744 ORTHO05D006546 4.1e-76 289.7 233 68.7
Cpa.g.sc19.99 Carica papaya HOM05D002744 ORTHO05D008989 4.6e-72 276.2 307 53.1
Mapoly0001s0132 Marchantia polymorpha HOM05D002744 ORTHO05D006546 1.4e-68 264.6 395 42.8
Ca_27928_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 1.7e-66 257.7 292 53.1
AT2G40430 Arabidopsis thaliana HOM05D002744 ORTHO05D006546 2.3e-63 247.3 361 45.4
Ca_06977_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 2.5e-57 227.3 185 62.7
CBR_g88544 Chara braunii HOM05D002744 ORTHO05D006546 2.1e-56 224.2 440 38.0
AagrBONN_evm.TU.Sc2ySwM_344.2566 Anthoceros agrestis HOM05D002744 ORTHO05D006546 3.9e-55 219.9 351 40.2
Solyc06g050820.3 Solanum lycopersicum HOM05D002744 ORTHO05D006546 5.2e-55 219.5 158 77.2
CAN.G39.16 Capsicum annuum HOM05D002744 ORTHO05D006546 2.0e-54 217.6 125 95.2
SHI18675 Sapria himalayana HOM05D002744 ORTHO05D006546 2.0e-51 207.6 258 49.2
MBI16_g06795_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D018022 6.5e-50 202.6 222 52.3
Pp3c22_7700 Physcomitrium patens HOM05D002744 ORTHO05D006546 7.5e-46 189.1 359 36.5
Oeu017758.1 Olea europaea HOM05D002744 ORTHO05D006546 6.1e-40 169.5 118 73.7
PRCOL_00000452 Prasinoderma coloniale HOM05D002744 ORTHO05D006546 3.0e-18 97.4 408 26.0
AUR62042571 Chenopodium quinoa HOM05D002744 ORTHO05D006546 1.1e-17 95.5 102 52.9
Atru.chr12.137 Acer truncatum HOM05D002744 ORTHO05D006546 5.6e-17 93.2 57 82.5
HanXRQChr04g0102991 Helianthus annuus HOM05D002744 ORTHO05D006546 7.3e-17 92.8 62 69.4
MCO01G055 Micromonas commoda HOM05D002744 ORTHO05D006546 2.1e-16 91.3 216 32.9
Aqoxy466s002 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 5.2e-15 86.7 117 48.7
Cre07.g348250 Chlamydomonas reinhardtii HOM05D002744 ORTHO05D006546 8.9e-15 85.9 519 24.1
SHI18673 Sapria himalayana HOM05D002744 ORTHO05D006546 4.4e-14 83.6 53 73.6
Lsat_1_v5_gn_5_82241 Lactuca sativa HOM05D002744 ORTHO05D006546 9.2e-12 75.9 50 74.0
arahy.Tifrunner.gnm1.ann1.LJQ8FI Arachis hypogaea HOM05D002744 ORTHO05D006546 2.8e-08 64.3 60 60.0
Cfa025636 Carpinus fangiana HOM05D002744 ORTHO05D006546 1.1e-07 62.4 419 26.0
Sopen06g016500 Solanum pennellii HOM05D002744 ORTHO05D006546 1.1e-07 62.4 66 60.6
arahy.Tifrunner.gnm1.ann1.WF3XAB Arachis hypogaea HOM05D002744 ORTHO05D006546 5.2e-07 60.1 61 59.0
arahy.Tifrunner.gnm1.ann1.XR4RRM Arachis hypogaea HOM05D002744 ORTHO05D006546 1.5e-06 58.5 61 57.4
arahy.Tifrunner.gnm1.ann1.U77MTX Arachis hypogaea HOM05D002744 ORTHO05D006546 3.4e-06 57.4 59 57.6


User provided reference genes

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