Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g067740.4 Solanum lycopersicum HOM05D001104 ORTHO05D006624 7.2e-253 876.7 427 100.0
Sopen02g016860 Solanum pennellii HOM05D001104 ORTHO05D006624 1.4e-251 872.5 427 99.5
PGSC0003DMG400006955 Solanum tuberosum HOM05D001104 ORTHO05D006624 2.8e-249 864.8 427 98.6
Nitab4.5_0001709g0040 Nicotiana tabacum HOM05D001104 ORTHO05D006624 4.1e-240 834.3 427 94.4
CAN.G973.9 Capsicum annuum HOM05D001104 ORTHO05D006624 2.3e-238 828.6 427 94.4
Dinv35069 Davidia involucrata HOM05D001104 ORTHO05D006624 2.3e-222 775.4 427 85.9
Cc07_g02180 Coffea canephora HOM05D001104 ORTHO05D006624 3.0e-222 775.0 427 86.2
Oeu062922.1 Olea europaea HOM05D001104 ORTHO05D006624 1.1e-221 773.1 427 84.8
CSS0039746 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 1.2e-220 769.6 427 85.5
Peaxi162Scf00933g00005 Petunia axillaris HOM05D001104 ORTHO05D006624 3.1e-219 765.0 393 94.7
Rhsim10G0021500 Rhododendron simsii HOM05D001104 ORTHO05D006624 1.2e-218 763.1 427 85.0
CSS0024274 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 7.5e-218 760.4 431 84.2
Hma1.2p1_0993F.1_g245480 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 2.1e-215 752.3 427 83.6
MSTRG.15512 Avicennia marina HOM05D001104 ORTHO05D006624 7.8e-215 750.4 427 82.4
Dinv33487 Davidia involucrata HOM05D001104 ORTHO05D006624 1.3e-214 749.6 425 84.0
Migut.H00115 Erythranthe guttata HOM05D001104 ORTHO05D006624 1.5e-213 746.1 429 83.4
Actinidia06020 Actinidia chinensis HOM05D001104 ORTHO05D006624 1.9e-213 745.7 425 83.8
Actinidia35743 Actinidia chinensis HOM05D001104 ORTHO05D006624 6.2e-212 740.7 427 82.9
Cpa.g.sc215.8 Carica papaya HOM05D001104 ORTHO05D006624 1.4e-211 739.6 427 81.0
Prupe.3G285400 Prunus persica HOM05D001104 ORTHO05D006624 2.6e-210 735.3 435 80.0
TWI12G0063 Tripterygium wilfordii HOM05D001104 ORTHO05D006624 5.8e-210 734.2 427 81.3
Haze_14675 Corylus avellana HOM05D001104 ORTHO05D006624 4.9e-209 731.1 425 82.1
Atru.chr6.2305 Acer truncatum HOM05D001104 ORTHO05D006624 7.1e-208 727.2 427 80.1
Sed0005946 Sechium edule HOM05D001104 ORTHO05D006624 8.7e-206 720.3 427 79.4
CsaV3_5G027380 Cucumis sativus L. HOM05D001104 ORTHO05D006624 1.5e-205 719.5 419 79.7
CiPaw.03G038600 Carya illinoinensis HOM05D001104 ORTHO05D006624 2.5e-205 718.8 418 82.1
MD17G1034200 Malus domestica HOM05D001104 ORTHO05D006624 9.6e-205 716.8 447 76.3
Potri.001G348700 Populus trichocarpa HOM05D001104 ORTHO05D006624 1.6e-204 716.1 427 79.2
MELO3C021546.2 Cucumis melo HOM05D001104 ORTHO05D006624 3.6e-204 714.9 419 79.2
Lj7C592G4 Lonicera japonica HOM05D001104 ORTHO05D006624 3.1e-203 711.8 427 78.9
Ciclev10015353m.g Citrus clementina HOM05D001104 ORTHO05D006624 6.9e-203 710.7 427 78.5
Thecc.04G010000 Theobroma cacao HOM05D001104 ORTHO05D006624 6.9e-203 710.7 427 78.2
SalBow1G5303 Salvia bowleyana HOM05D001104 ORTHO05D006624 4.4e-202 708.0 429 79.0
vmacro05831 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 4.9e-201 704.5 435 78.9
Duzib147G0036 Durio zibethinus HOM05D001104 ORTHO05D006624 3.2e-200 701.8 426 77.0
TAR374G1405 Trochodendron aralioides HOM05D001104 ORTHO05D006624 2.1e-199 699.1 418 78.5
RcHm_v2.0_Chr2g0171701 Rosa chinensis HOM05D001104 ORTHO05D006624 3.5e-199 698.4 441 75.3
GSVIVG01032469001 Vitis vinifera HOM05D001104 ORTHO05D006624 9.6e-197 690.3 427 76.6
Eucgr.I01793 Eucalyptus grandis HOM05D001104 ORTHO05D006624 1.3e-196 689.9 410 78.3
CANSAT64G0855 Cannabis sativa HOM05D001104 ORTHO05D006624 4.8e-196 688.0 427 75.9
HanXRQChr14g0450311 Helianthus annuus HOM05D001104 ORTHO05D006624 4.0e-195 684.9 427 74.7
COL.COLO4_28978 Corchorus olitorius HOM05D001104 ORTHO05D006624 5.3e-195 684.5 450 74.0
Gohir.A07G220700 Gossypium hirsutum HOM05D001104 ORTHO05D006624 2.6e-194 682.2 427 74.0
Gorai.001G262300 Gossypium raimondii HOM05D001104 ORTHO05D006624 3.4e-194 681.8 427 74.2
ECA232G2826 Erigeron canadensis HOM05D001104 ORTHO05D006624 4.9e-193 677.9 428 74.3
FAN14G0697 Fragaria x ananassa HOM05D001104 ORTHO05D006624 6.4e-193 677.6 433 73.9
FvH4_6g50760 Fragaria vesca HOM05D001104 ORTHO05D006624 8.4e-193 677.2 433 73.9
Hma1.2p1_3249F.1_g334430 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 1.4e-192 676.4 395 80.8
FAN05G2035 Fragaria x ananassa HOM05D001104 ORTHO05D006624 2.4e-192 675.6 433 74.1
Cfa007422 Carpinus fangiana HOM05D001104 ORTHO05D006624 7.1e-192 674.1 391 82.9
Nn4g22776 Nelumbo nucifera HOM05D001104 ORTHO05D006624 3.5e-191 671.8 419 74.9
MD09G1032600 Malus domestica HOM05D001104 ORTHO05D006624 4.6e-191 671.4 448 73.0
ECA238G2799 Erigeron canadensis HOM05D001104 ORTHO05D006624 6.0e-191 671.0 424 73.6
QL02p076349 Quercus lobata HOM05D001104 ORTHO05D006624 1.0e-190 670.2 418 77.0
ClCG09G018970 Citrullus lanatus HOM05D001104 ORTHO05D006624 1.5e-189 666.4 470 68.3
HanXRQChr09g0266171 Helianthus annuus HOM05D001104 ORTHO05D006624 1.5e-189 666.4 427 73.8
arahy.Tifrunner.gnm1.ann1.PA6DSG Arachis hypogaea HOM05D001104 ORTHO05D006624 8.1e-188 660.6 413 74.8
Medtr6g007040 Medicago truncatula HOM05D001104 ORTHO05D006624 1.5e-186 656.4 419 74.2
PSO478G3469 Papaver somniferum HOM05D001104 ORTHO05D006624 4.5e-186 654.8 429 74.8
Aqoxy3G01030 Aquilegia oxysepala HOM05D001104 ORTHO05D006624 3.8e-185 651.7 420 75.0
PGR142G0881 Punica granatum HOM05D001104 ORTHO05D006624 4.9e-185 651.4 424 72.4
Phvul.004G013700 Phaseolus vulgaris HOM05D001104 ORTHO05D006624 1.4e-184 649.8 425 72.9
VMungo0464G0407 Vigna mungo HOM05D001104 ORTHO05D006624 1.4e-184 649.8 424 72.4
SGA_v2.0_scaffold135G34875 Striga asiatica HOM05D001104 ORTHO05D006624 2.4e-184 649.0 371 85.2
DCAR_011201 Daucus carota HOM05D001104 ORTHO05D006624 2.7e-183 645.6 396 76.3
Glyma.19G007900 Glycine max HOM05D001104 ORTHO05D006624 1.8e-182 642.9 426 72.3
arahy.Tifrunner.gnm1.ann1.S5BZSG Arachis hypogaea HOM05D001104 ORTHO05D006624 3.0e-182 642.1 433 70.7
THA.LOC104825337 Tarenaya hassleriana HOM05D001104 ORTHO05D006624 2.4e-179 632.5 430 70.7
DCAR_015045 Daucus carota HOM05D001104 ORTHO05D006624 1.2e-178 630.2 453 67.5
Nitab4.5_0001125g0070 Nicotiana tabacum HOM05D001104 ORTHO05D006624 4.5e-178 628.2 432 75.2
Sp2g16980 Schrenkiella parvula HOM05D001104 ORTHO05D006624 1.0e-177 627.1 429 70.9
BcaC06g30950 Brassica carinata HOM05D001104 ORTHO05D006624 2.2e-177 625.9 430 70.9
Thhalv10004293m.g Eutrema salsugineum HOM05D001104 ORTHO05D006624 2.2e-177 625.9 428 71.0
Gohir.D07G227400 Gossypium hirsutum HOM05D001104 ORTHO05D006624 2.2e-177 625.9 395 73.4
Lalb_Chr06g0176011 Lupinus albus HOM05D001104 ORTHO05D006624 3.8e-177 625.2 414 70.5
BcaC06g33770 Brassica carinata HOM05D001104 ORTHO05D006624 1.1e-176 623.6 429 70.9
C07p37130 Brassica napus HOM05D001104 ORTHO05D006624 1.1e-176 623.6 429 70.9
PSO017G6424 Papaver somniferum HOM05D001104 ORTHO05D006624 1.4e-176 623.2 429 71.8
Ca_04192_v3 Cicer arietinum L. HOM05D001104 ORTHO05D006624 1.6e-175 619.8 417 71.2
Lsat_1_v5_gn_4_182480 Lactuca sativa HOM05D001104 ORTHO05D006624 1.0e-174 617.1 427 69.6
MBI16_g05636_MAGBIO Magnolia biondii HOM05D001104 ORTHO05D006624 3.0e-174 615.5 395 72.7
Lj2g0012499 Lotus japonicus HOM05D001104 ORTHO05D006624 8.7e-174 614.0 411 71.0
FAN02G3192 Fragaria x ananassa HOM05D001104 ORTHO05D006624 1.4e-171 606.7 488 62.7
Carub.0005s0650 Capsella rubella HOM05D001104 ORTHO05D006624 1.3e-169 600.1 428 68.0
CARHR149500 Cardamine hirsuta HOM05D001104 ORTHO05D006624 1.3e-169 600.1 424 69.3
CSS0016338 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 2.2e-169 599.4 457 68.3
AL5G17430 Arabidopsis lyrata HOM05D001104 ORTHO05D006624 3.8e-169 598.6 419 68.0
AT3G27930 Arabidopsis thaliana HOM05D001104 ORTHO05D006624 5.0e-169 598.2 419 68.5
ATR0730G148 Amborella trichopoda HOM05D001104 ORTHO05D006624 1.8e-166 589.7 418 66.5
EL10Ac4g08579 Beta vulgaris HOM05D001104 ORTHO05D006624 8.2e-164 580.9 424 65.6
Oeu043054.1 Olea europaea HOM05D001104 ORTHO05D006285 9.1e-163 577.4 386 74.1
Sc03g0007930 Simmondsia chinensis HOM05D001104 ORTHO05D006624 5.1e-158 561.6 344 77.3
Aa31LG2G4840 Aethionema arabicum HOM05D001104 ORTHO05D006285 6.7e-158 561.2 382 70.9
Os05g0577800 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 2.8e-156 555.8 427 60.7
Manes.17G117000 Manihot esculenta HOM05D001104 ORTHO05D006624 5.3e-155 551.6 427 64.9
vmacro18250 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 2.5e-152 542.7 427 65.6
CSS0012459 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 3.6e-151 538.9 436 65.1
CDE06G1183 Ceratophyllum demersum HOM05D001104 ORTHO05D006624 9.7e-149 530.8 427 60.4
HPP92_024321 Vanilla planifolia HOM05D001104 ORTHO05D006285 3.0e-142 509.2 357 65.8
unitig_899.g15491 Utricularia gibba HOM05D000928 ORTHO05D001186 1.9e-136 490.0 402 60.7
BcaC03g17495 Brassica carinata HOM05D001104 ORTHO05D006624 2.7e-135 486.1 409 60.9
Psat1g057160 Pisum sativum HOM05D001104 ORTHO05D006624 6.3e-132 474.9 303 73.6
Rhsim08G0054100 Rhododendron simsii HOM05D001104 ORTHO05D006285 1.0e-121 441.0 425 56.7
Os05g0577900 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 6.6e-121 438.3 421 51.8
AUR62029365 Chenopodium quinoa HOM05D001104 ORTHO05D006624 3.3e-120 436.0 424 53.1
A06p40770 Brassica napus HOM05D001104 ORTHO05D006624 6.1e-119 431.8 290 73.1
BolC7t44224H Brassica oleracea HOM05D001104 ORTHO05D006624 1.8e-118 430.3 289 72.7
BraA06t26998Z Brassica rapa HOM05D001104 ORTHO05D006624 2.3e-118 429.9 289 73.0
AUR62043218 Chenopodium quinoa HOM05D001104 ORTHO05D006624 6.6e-113 411.8 418 52.4
C02p54520 Brassica napus HOM05D001104 ORTHO05D006624 1.5e-112 410.6 436 51.6
C02p54570 Brassica napus HOM05D001104 ORTHO05D006624 6.8e-110 401.7 458 48.9
AagrBONN_evm.TU.Sc2ySwM_340.221 Anthoceros agrestis HOM05D001104 ORTHO05D006624 8.3e-108 394.8 439 47.2
Pp3c25_9610 Physcomitrium patens HOM05D001104 ORTHO05D006624 1.3e-100 370.9 432 46.5
Zm00001eb344500 Zea mays HOM05D001104 ORTHO05D006624 9.5e-96 354.8 270 61.9
BolC2t11515H Brassica oleracea HOM05D001104 ORTHO05D006624 2.1e-95 353.6 636 36.8
HanXRQChr06g0175561 Helianthus annuus HOM05D001104 ORTHO05D006624 1.2e-90 337.8 288 59.4
TPR.G2265 Trifolium pratense HOM05D001104 ORTHO05D006624 1.6e-87 327.4 198 76.3
Hund10304 Selenicereus undatus HOM05D001104 ORTHO05D006624 3.2e-83 313.2 266 58.6
A02p35680 Brassica napus HOM05D001104 ORTHO05D006624 1.0e-81 308.1 692 31.6
BraA02t08571Z Brassica rapa HOM05D001104 ORTHO05D006624 7.6e-61 238.8 542 32.3
BolC2t11520H Brassica oleracea HOM05D001104 ORTHO05D006624 8.4e-60 235.3 328 43.9
Psat0s3401g0080 Pisum sativum HOM05D001104 ORTHO05D006624 2.2e-55 220.7 146 71.9
Cfa008567 Carpinus fangiana HOM05D001104 ORTHO05D006624 5.3e-54 216.1 163 68.1
A06p40780 Brassica napus HOM05D001104 ORTHO05D006624 2.0e-45 187.6 122 69.7
BraA02t08570Z Brassica rapa HOM05D001104 ORTHO05D006624 1.4e-41 174.9 107 72.9
SEGI_13753 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 2.4e-38 164.1 153 52.3
Oeu043225.1 Olea europaea HOM05D003428 ORTHO05D006624 5.3e-38 162.9 289 36.3
Oeu051906.1 Olea europaea HOM05D003428 ORTHO05D006624 1.5e-37 161.4 289 36.3
Psat1g219520 Pisum sativum HOM05D001104 ORTHO05D006624 8.8e-33 145.6 113 65.5
Glyma.05G007402 Glycine max HOM05D001104 ORTHO05D006624 3.7e-31 140.2 80 82.5
Actinidia36089 Actinidia chinensis HOM05D001104 ORTHO05D006624 7.5e-24 115.9 64 85.9
Thecc.04G111800 Theobroma cacao HOM05D001104 ORTHO05D006624 9.8e-24 115.5 85 58.8
Cfa008566 Carpinus fangiana HOM05D001104 ORTHO05D006624 2.2e-20 104.4 58 84.5
BcaB07g30139 Brassica carinata HOM05D001104 ORTHO05D006624 2.7e-18 97.4 69 69.6
Cre08.g358552 Chlamydomonas reinhardtii HOM05D001104 ORTHO05D006624 5.7e-16 89.7 465 23.7
HanXRQChr16g0517041 Helianthus annuus HOM05D001104 ORTHO05D006624 3.7e-15 87.0 73 53.4
SEGI_37884 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 4.1e-14 83.6 60 56.7
Sopen07g006450 Solanum pennellii HOM05D001104 ORTHO05D006624 1.6e-13 81.6 43 86.0
TPR.G18830 Trifolium pratense HOM05D001104 ORTHO05D006624 3.4e-08 63.9 44 63.6
SEGI_12261 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 9.8e-08 62.4 98 40.8
Medtr6g007060 Medicago truncatula HOM05D001104 ORTHO05D006624 9.2e-06 55.8 42 52.4


User provided reference genes

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