Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g062110.4 Solanum lycopersicum HOM05D005650 ORTHO05D007020 1.4e-290 1002.3 511 100.0
Sopen02g013060 Solanum pennellii HOM05D005650 ORTHO05D007020 1.3e-285 985.7 511 98.0
CAN.G1206.2 Capsicum annuum HOM05D005650 ORTHO05D007020 1.2e-270 936.0 511 93.5
Nitab4.5_0002337g0070 Nicotiana tabacum HOM05D005650 ORTHO05D007020 1.3e-269 932.6 524 91.0
Nitab4.5_0000188g0130 Nicotiana tabacum HOM05D005650 ORTHO05D007020 1.2e-241 839.7 515 85.0
CSS0031782 Camellia sinensis var. sinensis HOM05D005650 ORTHO05D007020 8.1e-227 790.4 512 77.7
Dinv26372 Davidia involucrata HOM05D005650 ORTHO05D007020 3.2e-223 778.5 512 77.0
Peaxi162Scf00439g00528 Petunia axillaris HOM05D005650 ORTHO05D007020 4.2e-223 778.1 511 79.8
Hma1.2p1_0192F.1_g083470 Hydrangea macrophylla HOM05D005650 ORTHO05D007020 4.8e-219 764.6 511 75.0
MSTRG.23341 Avicennia marina HOM05D005650 ORTHO05D007020 4.5e-217 758.1 512 74.6
QL03p037983 Quercus lobata HOM05D005650 ORTHO05D007020 1.3e-216 756.5 512 74.8
Cfa015047 Carpinus fangiana HOM05D005650 ORTHO05D007020 1.4e-215 753.1 511 74.2
SGA_v2.0_scaffold111G31522 Striga asiatica HOM05D005650 ORTHO05D007020 1.9e-215 752.7 531 72.7
GSVIVG01011626001 Vitis vinifera HOM05D005650 ORTHO05D007020 4.2e-215 751.5 526 74.3
Thecc.02G307700 Theobroma cacao HOM05D005650 ORTHO05D007020 5.5e-215 751.1 525 73.3
Atru.chr11.825 Acer truncatum HOM05D005650 ORTHO05D007020 2.1e-214 749.2 525 73.3
Haze_10848 Corylus avellana HOM05D005650 ORTHO05D007020 2.1e-214 749.2 524 72.5
ECA234G4226 Erigeron canadensis HOM05D005650 ORTHO05D007020 3.6e-214 748.4 517 73.5
Ciclev10014948m.g Citrus clementina HOM05D005650 ORTHO05D007020 1.0e-213 746.9 512 74.0
Cc11_g06590 Coffea canephora HOM05D005650 ORTHO05D007020 1.3e-213 746.5 526 73.2
Gohir.A03G112000 Gossypium hirsutum HOM05D005650 ORTHO05D007020 8.7e-213 743.8 512 73.2
Gohir.D02G136500 Gossypium hirsutum HOM05D005650 ORTHO05D007020 1.1e-212 743.4 525 72.4
Gorai.005G152600 Gossypium raimondii HOM05D005650 ORTHO05D007020 1.1e-212 743.4 525 72.4
TAR622G0850 Trochodendron aralioides HOM05D005650 ORTHO05D007020 1.5e-212 743.0 513 73.9
Duzib248G0273 Durio zibethinus HOM05D005650 ORTHO05D007020 1.9e-212 742.7 512 73.2
MD13G1018100 Malus domestica HOM05D005650 ORTHO05D007020 3.3e-212 741.9 514 73.5
Manes.15G123300 Manihot esculenta HOM05D005650 ORTHO05D007020 4.3e-212 741.5 512 74.2
Potri.008G137000 Populus trichocarpa HOM05D005650 ORTHO05D007020 4.3e-212 741.5 512 73.4
Duzib251G0272 Durio zibethinus HOM05D005650 ORTHO05D007020 7.4e-212 740.7 526 71.9
Glyma.05G240900 Glycine max HOM05D005650 ORTHO05D007020 1.3e-211 740.0 510 73.5
Prupe.7G053000 Prunus persica HOM05D005650 ORTHO05D007020 1.6e-211 739.6 515 73.2
MD16G1016000 Malus domestica HOM05D005650 ORTHO05D007020 1.1e-210 736.9 514 72.6
Actinidia12402 Actinidia chinensis HOM05D005650 ORTHO05D007020 1.8e-210 736.1 525 72.2
CiPaw.06G055300 Carya illinoinensis HOM05D005650 ORTHO05D007020 6.9e-210 734.2 511 72.2
FvH4_4g33280 Fragaria vesca HOM05D005650 ORTHO05D007020 9.0e-210 733.8 511 72.2
Rhsim09G0087900 Rhododendron simsii HOM05D005650 ORTHO05D007020 4.5e-209 731.5 504 75.0
Nn8g41275 Nelumbo nucifera HOM05D005650 ORTHO05D007020 7.7e-209 730.7 515 72.4
arahy.Tifrunner.gnm1.ann1.L5UDEC Arachis hypogaea HOM05D005650 ORTHO05D007020 1.0e-208 730.3 525 70.7
SalBow3G3602 Salvia bowleyana HOM05D005650 ORTHO05D007020 2.2e-208 729.2 535 70.3
HanXRQChr17g0565991 Helianthus annuus HOM05D005650 ORTHO05D007020 8.5e-208 727.2 515 71.5
RcHm_v2.0_Chr4g0442431 Rosa chinensis HOM05D005650 ORTHO05D007020 2.5e-207 725.7 514 71.6
PSO063G5777 Papaver somniferum HOM05D005650 ORTHO05D007020 3.6e-206 721.8 513 71.3
Psat4g004560 Pisum sativum HOM05D005650 ORTHO05D007020 3.6e-206 721.8 512 72.5
Eucgr.B02693 Eucalyptus grandis HOM05D005650 ORTHO05D007020 4.6e-206 721.5 525 71.0
Glyma.08G047900 Glycine max HOM05D005650 ORTHO05D007020 1.4e-205 719.9 525 70.7
PSO782G4204 Papaver somniferum HOM05D005650 ORTHO05D007020 3.0e-205 718.8 513 71.0
Phvul.011G008500 Phaseolus vulgaris HOM05D005650 ORTHO05D007020 3.0e-205 718.8 505 71.9
Sabra08G0104500 Salix brachista HOM05D005650 ORTHO05D007020 3.0e-205 718.8 564 66.8
arahy.Tifrunner.gnm1.ann1.NIUA4E Arachis hypogaea HOM05D005650 ORTHO05D007020 3.9e-205 718.4 555 66.7
Lj4g0026003 Lotus japonicus HOM05D005650 ORTHO05D007020 8.8e-205 717.2 512 71.9
DCAR_023564 Daucus carota HOM05D005650 ORTHO05D007020 2.0e-204 716.1 513 69.8
Lsat_1_v5_gn_4_23420 Lactuca sativa HOM05D005650 ORTHO05D007020 1.3e-203 713.4 527 69.8
Aqoxy2G00265 Aquilegia oxysepala HOM05D005650 ORTHO05D007020 3.7e-203 711.8 514 70.2
Medtr8g105900 Medicago truncatula HOM05D005650 ORTHO05D007020 4.1e-202 708.4 525 69.7
TWI74G1652 Tripterygium wilfordii HOM05D005650 ORTHO05D007020 6.9e-202 707.6 527 69.3
VMungo1127G0110 Vigna mungo HOM05D005650 ORTHO05D007020 6.9e-202 707.6 507 72.0
VMungo0251G0664 Vigna mungo HOM05D005650 ORTHO05D007020 3.4e-201 705.3 504 72.8
Sc14g0006580 Simmondsia chinensis HOM05D005650 ORTHO05D007020 1.0e-200 703.7 513 69.4
CANSAT78G2020 Cannabis sativa HOM05D005650 ORTHO05D007020 5.0e-200 701.4 527 69.1
AUR62036082 Chenopodium quinoa HOM05D005650 ORTHO05D007020 6.3e-195 684.5 512 66.2
CsaV3_5G014540 Cucumis sativus L. HOM05D005650 ORTHO05D007020 6.3e-195 684.5 512 68.9
Lj6C735G0 Lonicera japonica HOM05D005650 ORTHO05D007020 3.1e-194 682.2 546 65.6
AUR62035393 Chenopodium quinoa HOM05D005650 ORTHO05D007020 2.6e-193 679.1 512 66.4
Hund07852 Selenicereus undatus HOM05D005650 ORTHO05D007020 2.6e-193 679.1 513 67.4
Dinv01894 Davidia involucrata HOM05D005650 ORTHO05D007020 2.2e-192 676.0 484 71.9
unitig_21.g20969 Utricularia gibba HOM05D005650 ORTHO05D007020 2.2e-192 676.0 521 66.4
Lalb_Chr14g0362121 Lupinus albus HOM05D005650 ORTHO05D007020 6.5e-192 674.5 505 66.3
Sed0001111 Sechium edule HOM05D005650 ORTHO05D007020 1.5e-191 673.3 511 66.7
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 3.0e-189 665.6 513 66.9
FAN07G2273 Fragaria x ananassa HOM05D005650 ORTHO05D007020 2.6e-188 662.5 500 67.6
AT1G80910 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 5.7e-188 661.4 511 66.1
Carub.0002s2663 Capsella rubella HOM05D005650 ORTHO05D007020 5.7e-188 661.4 511 65.8
Cpa.g.sc362.1 Carica papaya HOM05D005650 ORTHO05D007020 7.5e-188 661.0 465 72.9
Aa31LG7G600 Aethionema arabicum HOM05D005650 ORTHO05D007020 2.2e-187 659.4 508 66.3
FAN17G2396 Fragaria x ananassa HOM05D005650 ORTHO05D007020 8.2e-187 657.5 502 66.9
C06p29600 Brassica napus HOM05D005650 ORTHO05D007020 1.8e-186 656.4 513 66.1
Thhalv10018445m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 3.1e-186 655.6 513 67.1
BcaC08g45346 Brassica carinata HOM05D005650 ORTHO05D007020 5.3e-186 654.8 513 65.9
Thhalv10007433m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 5.3e-186 654.8 509 66.0
Sp5g34830 Schrenkiella parvula HOM05D005650 ORTHO05D007020 9.1e-186 654.1 513 66.7
AL2G40470 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 2.0e-185 652.9 511 66.1
BraA07t30337Z Brassica rapa HOM05D005650 ORTHO05D007020 2.0e-185 652.9 532 64.7
THA.LOC104814015 Tarenaya hassleriana HOM05D005650 ORTHO05D007020 2.0e-185 652.9 532 64.3
A07p26920 Brassica napus HOM05D005650 ORTHO05D007020 1.1e-183 647.1 505 66.5
CARHR073550 Cardamine hirsuta HOM05D005650 ORTHO05D007020 2.5e-183 646.0 513 64.9
Migut.H02363 Erythranthe guttata HOM05D005650 ORTHO05D007020 1.2e-182 643.7 511 67.3
BolC6t38125H Brassica oleracea HOM05D005650 ORTHO05D007020 6.1e-182 641.3 533 63.4
CARHR016520 Cardamine hirsuta HOM05D005650 ORTHO05D007020 8.0e-182 641.0 508 64.2
AL1G28180 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 1.4e-181 640.2 521 63.7
AT1G16020 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 1.4e-181 640.2 521 63.1
Sp1g14330 Schrenkiella parvula HOM05D005650 ORTHO05D007020 5.2e-181 638.3 522 63.8
TPR.G19250 Trifolium pratense HOM05D005650 ORTHO05D007020 5.2e-181 638.3 511 66.3
Aa31LG4G1220 Aethionema arabicum HOM05D005650 ORTHO05D007020 3.1e-178 629.0 513 64.5
ATR0021G018 Amborella trichopoda HOM05D005650 ORTHO05D007020 3.5e-177 625.5 513 63.9
CiPaw.05G158000 Carya illinoinensis HOM05D005650 ORTHO05D007020 1.3e-176 623.6 430 73.0
Carub.0001s1582 Capsella rubella HOM05D005650 ORTHO05D007020 6.5e-176 621.3 506 62.3
BraA09t41479Z Brassica rapa HOM05D005650 ORTHO05D007020 1.2e-174 617.1 523 63.3
C08p44650 Brassica napus HOM05D005650 ORTHO05D007020 2.8e-174 615.9 525 63.2
A09p61060 Brassica napus HOM05D005650 ORTHO05D007020 1.0e-173 614.0 523 63.1
BolC8t52011H Brassica oleracea HOM05D005650 ORTHO05D007020 1.8e-173 613.2 525 63.4
Os08g0427300 Oryza sativa ssp. japonica HOM05D005650 ORTHO05D007020 3.1e-170 602.4 510 61.6
SEGI_01999 Sequoiadendron giganteum HOM05D005650 ORTHO05D007020 3.1e-170 602.4 514 60.7
BcaB03g14509 Brassica carinata HOM05D005650 ORTHO05D007020 2.7e-169 599.4 509 62.1
Ah.01g015510 Amaranthus hybridus HOM05D005650 ORTHO05D007020 3.8e-168 595.5 521 61.2
PGR004G1106 Punica granatum HOM05D005650 ORTHO05D007020 1.6e-166 590.1 441 69.6
Zm00001eb179310 Zea mays HOM05D005650 ORTHO05D007020 5.2e-165 585.1 510 59.6
CDE05G1068 Ceratophyllum demersum HOM05D005650 ORTHO05D007020 1.3e-160 570.5 448 66.3
MELO3C026414.2 Cucumis melo HOM05D005650 ORTHO05D007020 1.7e-155 553.5 441 65.3
SHI04292 Sapria himalayana HOM05D005650 ORTHO05D007020 2.8e-150 536.2 496 58.5
COL.COLO4_27613 Corchorus olitorius HOM05D005650 ORTHO05D007020 4.0e-141 505.8 355 72.7
HPP92_009689 Vanilla planifolia HOM05D005650 ORTHO05D007020 5.1e-128 462.2 391 61.6
Sed0000862 Sechium edule HOM05D005650 ORTHO05D007020 2.4e-125 453.4 449 57.7
Mapoly0059s0063 Marchantia polymorpha HOM05D005650 ORTHO05D007020 1.3e-120 437.6 528 46.0
Pp3c16_7940 Physcomitrium patens HOM05D005650 ORTHO05D007020 9.6e-119 431.4 514 45.7
EL10Ac9g20842 Beta vulgaris HOM05D005650 ORTHO05D007020 2.0e-116 423.7 388 59.5
SMO146G0258 Selaginella moellendorffii HOM05D005650 ORTHO05D007020 6.0e-113 412.1 498 42.6
Oeu059514.1 Olea europaea HOM05D005650 ORTHO05D007020 7.9e-113 411.8 469 51.8
AagrBONN_evm.TU.Sc2ySwM_117.2271 Anthoceros agrestis HOM05D005650 ORTHO05D007020 1.9e-95 354.0 471 43.9
Dinv00920 Davidia involucrata HOM05D005650 ORTHO05D007020 3.6e-57 226.9 137 80.3
DCAR_023531 Daucus carota HOM05D005650 ORTHO05D007020 7.0e-53 212.6 436 36.5
Oeu036123.1 Olea europaea HOM05D005650 ORTHO05D007020 1.1e-42 178.7 124 73.4
C06p32880 Brassica napus HOM05D005650 ORTHO05D007020 1.4e-32 145.2 136 61.0
C05p23900 Brassica napus HOM05D005650 ORTHO05D007020 1.2e-28 132.1 257 37.7
CiPaw.05G157900 Carya illinoinensis HOM05D005650 ORTHO05D007020 1.8e-24 118.2 77 72.7
Lsat_1_v5_gn_2_121941 Lactuca sativa HOM05D005650 ORTHO05D007020 8.9e-24 115.9 76 69.7
Lsat_1_v5_gn_7_69840 Lactuca sativa HOM05D005650 ORTHO05D007020 4.4e-23 113.6 73 72.6
MELO3C019077.2 Cucumis melo HOM05D005650 ORTHO05D007020 2.2e-22 111.3 72 79.2
CBR_g31091 Chara braunii HOM05D000019 ORTHO05D000048 3.2e-21 107.5 142 39.4
C06p32890 Brassica napus HOM05D005650 ORTHO05D007020 4.2e-21 107.1 104 57.7
Lsat_1_v5_gn_1_123601 Lactuca sativa HOM05D005650 ORTHO05D007020 3.0e-19 100.9 65 69.2
Cre07.g327000 Chlamydomonas reinhardtii HOM05D005650 ORTHO05D007020 5.8e-15 86.7 269 27.5
CBR_g31097 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-11 74.7 53 58.5
BolC6t38409H Brassica oleracea HOM05D005650 ORTHO05D007020 6.2e-09 66.6 117 41.0
MCO11G935 Micromonas commoda HOM05D005650 ORTHO05D007020 1.1e-08 65.9 232 25.4
C06p53600 Brassica napus HOM05D005650 ORTHO05D040396 5.3e-08 63.5 46 69.6


User provided reference genes

Program Settings