Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 4.6e-189 664.5 345 100.0
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 1.9e-166 589.3 324 94.4
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 4.3e-139 498.4 333 81.7
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 2.7e-133 479.2 329 79.3
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 5.1e-116 421.8 272 78.3
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 1.8e-113 413.3 254 80.3
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 4.5e-112 408.7 247 82.6
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 8.5e-111 404.4 304 70.1
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 1.6e-109 400.2 314 67.5
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 1.4e-108 397.1 285 73.7
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 3.9e-108 395.6 283 71.4
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 3.9e-108 395.6 272 72.8
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 5.2e-108 395.2 304 67.4
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 6.7e-108 394.8 255 77.6
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 1.5e-107 393.7 359 61.8
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 2.6e-107 392.9 245 79.2
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 3.3e-107 392.5 321 64.2
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 3.3e-107 392.5 262 74.0
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 7.4e-107 391.3 322 67.4
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 7.4e-107 391.3 251 76.5
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 1.7e-106 390.2 250 78.8
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 1.7e-106 390.2 251 78.1
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 2.2e-106 389.8 294 70.4
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 3.7e-106 389.0 250 78.4
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 3.7e-106 389.0 251 78.1
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 6.3e-106 388.3 314 65.0
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 6.3e-106 388.3 300 67.7
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 1.1e-105 387.5 270 74.1
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 2.4e-105 386.3 251 77.7
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 3.1e-105 386.0 246 75.6
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 4.1e-105 385.6 338 62.4
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 5.3e-105 385.2 273 73.3
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 9.1e-105 384.4 314 64.3
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 9.1e-105 384.4 322 64.9
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 1.2e-104 384.0 326 63.2
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 1.6e-104 383.6 342 64.3
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 2.6e-104 382.9 246 76.0
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 4.5e-104 382.1 267 72.3
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 4.5e-104 382.1 262 72.9
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 5.9e-104 381.7 304 65.5
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 5.9e-104 381.7 247 76.1
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 1.3e-103 380.6 256 72.3
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 1.3e-103 380.6 247 75.7
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 1.3e-103 380.6 256 75.4
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.7e-103 380.2 261 71.3
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 1.7e-103 380.2 313 64.2
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 2.2e-103 379.8 254 75.2
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 3.8e-103 379.0 256 72.7
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 5.0e-103 378.6 302 64.9
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 5.0e-103 378.6 284 70.8
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 6.5e-103 378.3 249 75.1
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 8.5e-103 377.9 246 74.4
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 1.5e-102 377.1 250 73.6
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 1.5e-102 377.1 301 64.8
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 1.9e-102 376.7 321 62.9
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 3.2e-102 375.9 246 74.4
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 3.2e-102 375.9 299 65.2
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 4.2e-102 375.6 306 65.0
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 7.2e-102 374.8 251 73.7
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 9.4e-102 374.4 245 73.9
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 1.2e-101 374.0 355 58.3
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 2.1e-101 373.2 247 73.3
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 2.1e-101 373.2 299 64.5
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 6.1e-101 371.7 270 69.3
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 1.0e-100 370.9 246 72.8
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 1.8e-100 370.2 323 61.3
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 3.0e-100 369.4 324 62.3
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 8.8e-100 367.9 300 64.7
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 2.6e-99 366.3 265 70.9
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 3.3e-99 365.9 249 74.3
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 8.2e-98 361.3 249 71.9
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 1.4e-97 360.5 260 68.1
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 1.4e-97 360.5 244 74.2
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 1.8e-97 360.1 267 67.4
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 2.0e-96 356.7 279 64.9
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 1.7e-95 353.6 319 63.0
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 2.2e-95 353.2 279 64.5
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 3.8e-95 352.4 241 71.8
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 1.9e-94 350.1 267 67.4
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 2.5e-94 349.7 300 61.7
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 2.5e-94 349.7 241 72.2
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 2.5e-94 349.7 272 64.7
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 4.2e-94 349.0 241 71.4
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 4.2e-94 349.0 241 71.4
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 5.5e-94 348.6 243 70.8
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 7.2e-94 348.2 246 67.1
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 3.6e-93 345.9 248 68.5
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 4.7e-93 345.5 337 56.7
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 8.0e-93 344.7 316 60.1
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 1.0e-92 344.4 281 64.1
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 1.0e-92 344.4 302 61.6
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 1.4e-92 344.0 298 60.4
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 4.4e-91 339.0 329 54.4
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 2.8e-85 319.7 241 66.0
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 1.4e-84 317.4 241 65.1
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 1.8e-84 317.0 241 65.1
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 5.2e-84 315.5 238 65.1
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 1.2e-83 314.3 241 64.7
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 1.3e-79 300.8 269 59.5
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 6.1e-77 292.0 199 71.9
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 9.2e-73 278.1 272 55.5
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 1.2e-69 267.7 253 49.4
RcHm_v2.0_Chr6g0263291 Rosa chinensis HOM05D005205 ORTHO05D006155 3.1e-68 263.1 269 53.5
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.3e-66 257.7 272 48.2
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 1.1e-65 254.6 275 48.4
RcHm_v2.0_Chr1g0316621 Rosa chinensis HOM05D005205 ORTHO05D006155 1.8e-60 237.3 165 71.5
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 1.5e-54 217.6 268 45.9
FAN28G1115 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.5e-54 216.9 203 58.6
CDE05G2447 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 1.5e-51 207.6 139 72.7
FAN03G0776 Fragaria x ananassa HOM05D005205 ORTHO05D006155 5.4e-49 199.1 200 56.0
AagrBONN_evm.TU.Sc2ySwM_228.2354 Anthoceros agrestis HOM05D005205 ORTHO05D006155 1.0e-47 194.9 229 46.7
Rhsim04G0130700 Rhododendron simsii HOM05D005205 ORTHO05D006155 1.1e-46 191.4 169 59.8
vmacro08834 Vaccinium macrocarpon HOM05D005205 ORTHO05D006155 2.1e-45 187.2 212 52.4
Nn1g04118 Nelumbo nucifera HOM05D005205 ORTHO05D006155 9.9e-43 178.3 118 74.6
Hma1.2p1_3386F.1_g335770 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 1.0e-39 168.3 184 54.3
TPR.G30235 Trifolium pratense HOM05D005205 ORTHO05D006155 5.6e-38 162.5 168 53.0
Psat0s5832g0080 Pisum sativum HOM05D005205 ORTHO05D006155 4.8e-37 159.5 117 65.8
Ca_12346_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 1.1e-36 158.3 111 68.5
RcHm_v2.0_Chr4g0403031 Rosa chinensis HOM05D005205 ORTHO05D006155 1.7e-34 151.0 184 51.1
FAN14G4394 Fragaria x ananassa HOM05D005205 ORTHO05D006155 5.4e-33 146.0 108 66.7
BcaB01g05586 Brassica carinata HOM05D005205 ORTHO05D006155 2.1e-32 144.1 104 68.3
Hma1.2p1_3386F.1_g335780 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 3.9e-31 139.8 93 74.2
HanXRQChr01g0001451 Helianthus annuus HOM05D005205 ORTHO05D006155 2.8e-29 133.7 111 64.0
SEGI_15080 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 2.6e-27 127.1 123 53.7
Nn7g36511 Nelumbo nucifera HOM05D005205 ORTHO05D006155 3.4e-27 126.7 74 85.1
CDE05G2109 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 5.8e-27 125.9 118 55.9
PRCOL_00005587 Prasinoderma coloniale HOM05D005205 ORTHO05D006155 3.5e-24 116.7 200 32.5
Cc00_g03890 Coffea canephora HOM05D005205 ORTHO05D006155 3.9e-23 113.2 80 68.8
RcHm_v2.0_Chr3g0483721 Rosa chinensis HOM05D005205 ORTHO05D006155 4.3e-22 109.8 72 70.8
RcHm_v2.0_Chr3g0483731 Rosa chinensis HOM05D005205 ORTHO05D006155 7.4e-22 109.0 80 66.2
SHI21163 Sapria himalayana HOM05D005205 ORTHO05D006155 5.8e-19 99.4 190 38.4
SEGI_28687 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 5.8e-19 99.4 82 59.8
FAN01G2591 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.9e-17 94.4 115 48.7
Cre09.g402950 Chlamydomonas reinhardtii HOM05D005205 ORTHO05D006155 2.5e-17 94.0 205 30.2
Nn5g29101 Nelumbo nucifera HOM05D005205 ORTHO05D006155 3.0e-15 87.0 56 78.6
TPR.G15012 Trifolium pratense HOM05D005205 ORTHO05D006155 6.7e-15 85.9 56 76.8
TPR.G39699 Trifolium pratense HOM05D005205 ORTHO05D006155 1.5e-14 84.7 50 78.0
Mapoly0067s0102 Marchantia polymorpha HOM05D005205 ORTHO05D006155 2.8e-13 80.5 147 35.4
SHI21160 Sapria himalayana HOM05D005205 ORTHO05D006155 4.8e-13 79.7 99 46.5
Mapoly0067s0100 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.4e-12 78.2 160 33.8
MBI16_g05633_MAGBIO Magnolia biondii HOM05D000869 ORTHO05D000685 1.4e-09 68.2 203 32.5
Psat5g249280 Pisum sativum HOM05D005205 ORTHO05D006155 2.5e-09 67.4 52 65.4
Sabra08G0000800 Salix brachista HOM05D005205 ORTHO05D006155 3.2e-09 67.0 60 55.0
SHI21161 Sapria himalayana HOM05D005205 ORTHO05D006155 2.1e-08 64.3 48 58.3


User provided reference genes

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