Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g032920.3 Solanum lycopersicum HOM05D005402 ORTHO05D007036 0.0e+00 1357.8 689 100.0
Sopen02g011290 Solanum pennellii HOM05D005402 ORTHO05D007036 0.0e+00 1278.1 653 99.4
PGSC0003DMG400022060 Solanum tuberosum HOM05D005402 ORTHO05D007036 0.0e+00 1245.3 653 96.3
CAN.G128.67 Capsicum annuum HOM05D005402 ORTHO05D007036 0.0e+00 1138.3 648 88.3
Nitab4.5_0004712g0050 Nicotiana tabacum HOM05D005402 ORTHO05D007036 0.0e+00 1113.2 623 88.3
Nitab4.5_0000005g0240 Nicotiana tabacum HOM05D005402 ORTHO05D007036 0.0e+00 1111.3 623 89.2
Peaxi162Scf00307g01422 Petunia axillaris HOM05D005402 ORTHO05D007036 9.1e-306 1053.1 658 81.6
Peaxi162Scf00394g00020 Petunia axillaris HOM05D005402 ORTHO05D007036 2.2e-299 1031.9 649 81.0
Dinv13911 Davidia involucrata HOM05D005402 ORTHO05D007036 2.3e-272 942.2 658 71.4
Hma1.2p1_0412F.1_g147300 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 7.3e-263 910.6 652 69.3
MSTRG.7199 Avicennia marina HOM05D005402 ORTHO05D007036 2.6e-260 902.1 653 68.5
Oeu040335.1 Olea europaea HOM05D005402 ORTHO05D007036 5.8e-260 901.0 654 69.7
CSS0005702 Camellia sinensis var. sinensis HOM05D005402 ORTHO05D007036 9.2e-258 893.6 652 68.6
GSVIVG01012705001 Vitis vinifera HOM05D005402 ORTHO05D007036 2.8e-254 882.1 649 67.8
Migut.M01334 Erythranthe guttata HOM05D005402 ORTHO05D007036 2.0e-252 875.9 652 66.0
Cfa000204 Carpinus fangiana HOM05D005402 ORTHO05D007036 3.4e-252 875.2 662 67.1
vmacro15795 Vaccinium macrocarpon HOM05D005402 ORTHO05D007036 4.1e-250 868.2 658 64.6
Haze_06819 Corylus avellana HOM05D005402 ORTHO05D007036 1.6e-249 866.3 659 66.6
Cc09_g01510 Coffea canephora HOM05D005402 ORTHO05D007036 8.1e-246 854.0 650 67.1
Dinv20063 Davidia involucrata HOM05D005402 ORTHO05D007036 8.9e-245 850.5 658 66.1
HanXRQChr15g0470411 Helianthus annuus HOM05D005402 ORTHO05D007036 1.2e-244 850.1 657 64.4
DCAR_028193 Daucus carota HOM05D000001 ORTHO05D007036 4.9e-243 844.7 682 63.0
SalBow8G4792 Salvia bowleyana HOM05D005402 ORTHO05D007036 2.1e-241 839.3 650 64.3
Lsat_1_v5_gn_7_16460 Lactuca sativa HOM05D005402 ORTHO05D007036 7.3e-239 830.9 658 63.2
Duzib235G0987 Durio zibethinus HOM05D005402 ORTHO05D007036 3.1e-237 825.5 649 64.4
Prupe.4G224400 Prunus persica HOM05D005402 ORTHO05D007036 3.1e-237 825.5 654 63.6
PGR004G0080 Punica granatum HOM05D005402 ORTHO05D007036 2.9e-235 818.9 648 63.7
TAR629G0778 Trochodendron aralioides HOM05D005402 ORTHO05D007036 1.1e-234 817.0 658 62.3
Manes.16G005300 Manihot esculenta HOM05D005402 ORTHO05D007036 2.4e-234 815.8 646 62.7
Ciclev10014465m.g Citrus clementina HOM05D005402 ORTHO05D007036 3.2e-234 815.5 654 62.7
Gorai.009G179800 Gossypium raimondii HOM05D005402 ORTHO05D007036 1.2e-233 813.5 652 64.1
Gohir.D05G174500 Gossypium hirsutum HOM05D005402 ORTHO05D007036 1.6e-233 813.1 652 64.0
Gohir.A05G171400 Gossypium hirsutum HOM05D005402 ORTHO05D007036 4.6e-233 811.6 652 64.1
Atru.chr10.2252 Acer truncatum HOM05D005402 ORTHO05D007036 6.0e-233 811.2 655 61.7
ECA236G3723 Erigeron canadensis HOM05D005402 ORTHO05D000490 6.0e-233 811.2 653 62.5
Thecc.06G223300 Theobroma cacao HOM05D005402 ORTHO05D007036 6.0e-233 811.2 658 62.6
QL05p072729 Quercus lobata HOM05D005402 ORTHO05D007036 7.9e-233 810.8 661 62.5
Nn1g07183 Nelumbo nucifera HOM05D005402 ORTHO05D007036 2.5e-231 805.8 653 62.6
Ca_21074_v3 Cicer arietinum L. HOM05D005402 ORTHO05D007036 7.4e-231 804.3 660 60.9
ClCG01G021860 Citrullus lanatus HOM05D005402 ORTHO05D007036 6.9e-229 797.7 661 61.1
Glyma.17G012200 Glycine max HOM05D005402 ORTHO05D007036 1.2e-228 797.0 657 61.0
Medtr4g132340 Medicago truncatula HOM05D005402 ORTHO05D007036 2.2e-227 792.7 653 60.5
Glyma.07G261900 Glycine max HOM05D005402 ORTHO05D007036 2.9e-227 792.3 659 59.5
TPR.G36999 Trifolium pratense HOM05D005402 ORTHO05D007036 1.4e-226 790.0 656 60.1
FAN08G3587 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.9e-226 789.6 656 60.8
Hund23456 Selenicereus undatus HOM05D005402 ORTHO05D007036 1.9e-226 789.6 657 58.9
CsaV3_6G048920 Cucumis sativus L. HOM05D005402 ORTHO05D007036 3.2e-226 788.9 657 60.3
arahy.Tifrunner.gnm1.ann1.I0ZCH2 Arachis hypogaea HOM05D005402 ORTHO05D007036 1.6e-225 786.6 658 60.5
RcHm_v2.0_Chr7g0223851 Rosa chinensis HOM05D005402 ORTHO05D007036 2.1e-225 786.2 656 61.3
FAN18G2172 Fragaria x ananassa HOM05D005402 ORTHO05D007036 4.6e-225 785.0 656 60.7
MELO3C007401.2 Cucumis melo HOM05D005402 ORTHO05D007036 1.0e-224 783.9 657 59.8
Sed0000438 Sechium edule HOM05D005402 ORTHO05D007036 1.3e-224 783.5 661 60.4
arahy.Tifrunner.gnm1.ann1.T40CTJ Arachis hypogaea HOM05D005402 ORTHO05D007036 2.3e-224 782.7 658 60.3
AL7G24400 Arabidopsis lyrata HOM05D005402 ORTHO05D007036 2.5e-223 779.2 654 60.7
FAN04G1555 Fragaria x ananassa HOM05D005402 ORTHO05D007036 3.3e-223 778.9 656 60.4
THA.LOC104806309 Tarenaya hassleriana HOM05D005402 ORTHO05D007036 1.3e-222 776.9 648 59.9
Sp7g26160 Schrenkiella parvula HOM05D005402 ORTHO05D007036 2.1e-222 776.2 643 60.2
Potri.007G040000 Populus trichocarpa HOM05D005402 ORTHO05D007036 1.1e-221 773.9 655 61.2
C08p10670 Brassica napus HOM05D005402 ORTHO05D007036 1.8e-221 773.1 652 60.1
Eucgr.D01347 Eucalyptus grandis HOM05D005402 ORTHO05D007036 3.1e-221 772.3 657 59.7
Phvul.003G080200 Phaseolus vulgaris HOM05D005402 ORTHO05D007036 3.1e-221 772.3 658 58.4
Carub.0007s1256 Capsella rubella HOM05D005402 ORTHO05D007036 4.0e-221 771.9 648 59.6
COL.COLO4_31795 Corchorus olitorius HOM05D005402 ORTHO05D007036 4.0e-221 771.9 652 61.2
BcaC07g38316 Brassica carinata HOM05D005402 ORTHO05D007036 9.0e-221 770.8 652 60.1
VMungo1215G1509 Vigna mungo HOM05D005402 ORTHO05D007036 1.2e-220 770.4 659 59.6
BolC8t48740H Brassica oleracea HOM05D005402 ORTHO05D007036 2.0e-220 769.6 652 60.0
Aa31LG6G3970 Aethionema arabicum HOM05D005402 ORTHO05D007036 3.4e-220 768.8 644 60.7
FAN13G2175 Fragaria x ananassa HOM05D005402 ORTHO05D007036 7.6e-220 767.7 656 59.3
A08p20200 Brassica napus HOM05D005402 ORTHO05D007036 1.0e-219 767.3 651 59.9
BraA08t33979Z Brassica rapa HOM05D005402 ORTHO05D007036 1.0e-219 767.3 651 59.9
Sabra07G0036200 Salix brachista HOM05D005402 ORTHO05D007036 2.9e-219 765.8 667 59.7
FvH4_5g29980 Fragaria vesca HOM05D005402 ORTHO05D007036 4.2e-218 761.9 656 59.5
CARHR235910 Cardamine hirsuta HOM05D005402 ORTHO05D007036 7.1e-218 761.1 650 58.8
CANSAT56G4097 Cannabis sativa HOM05D005402 ORTHO05D007036 3.5e-217 758.8 662 58.9
Lj4g0015196 Lotus japonicus HOM05D005402 ORTHO05D007036 1.3e-216 756.9 656 58.7
Psat4g006080 Pisum sativum HOM05D005402 ORTHO05D007036 8.7e-216 754.2 666 58.0
PSO541G1465 Papaver somniferum HOM05D005402 ORTHO05D007036 4.3e-215 751.9 659 58.4
PSO675G3880 Papaver somniferum HOM05D005402 ORTHO05D007036 2.8e-214 749.2 659 58.4
AUR62015290 Chenopodium quinoa HOM05D005402 ORTHO05D007036 6.9e-213 744.6 647 57.8
MBI02_g15380_MAGBIO Magnolia biondii HOM05D005402 ORTHO05D007036 3.4e-212 742.3 668 56.6
BcaB03g12558 Brassica carinata HOM05D005402 ORTHO05D007036 2.2e-211 739.6 653 58.5
Lalb_Chr07g0177141 Lupinus albus HOM05D005402 ORTHO05D007036 3.9e-208 728.8 659 56.3
Lj2C266G9 Lonicera japonica HOM05D005402 ORTHO05D007036 7.4e-207 724.5 651 58.5
TWI63G0339 Tripterygium wilfordii HOM05D005402 ORTHO05D007036 1.3e-206 723.8 649 56.5
MD15G1066800 Malus domestica HOM05D005402 ORTHO05D007036 2.8e-206 722.6 664 56.0
unitig_748.g7549 Utricularia gibba HOM05D005402 ORTHO05D007036 4.1e-205 718.8 649 57.8
Ah.10g032740 Amaranthus hybridus HOM05D005402 ORTHO05D007036 5.3e-205 718.4 653 55.0
Thhalv10024642m.g Eutrema salsugineum HOM05D005402 ORTHO05D007036 3.8e-203 712.2 648 55.6
AT4G28200 Arabidopsis thaliana HOM05D005402 ORTHO05D007036 4.2e-202 708.8 653 56.2
Aqoxy1G03121 Aquilegia oxysepala HOM05D005402 ORTHO05D007036 9.4e-202 707.6 655 55.0
AUR62032734 Chenopodium quinoa HOM05D005402 ORTHO05D007036 1.6e-201 706.8 658 55.3
Actinidia11859 Actinidia chinensis HOM05D005402 ORTHO05D007036 3.9e-200 702.2 652 56.9
MD08G1079900 Malus domestica HOM05D005402 ORTHO05D007036 3.7e-198 695.7 656 54.9
Hma1.2p1_0412F.1_g147310 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 5.5e-194 681.8 491 68.2
Os02g0103900 Oryza sativa ssp. japonica HOM05D005402 ORTHO05D007036 1.6e-188 663.7 684 51.3
CiPaw.09G093500 Carya illinoinensis HOM05D005402 ORTHO05D007036 1.6e-185 653.7 509 65.8
CDE05G1008 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 2.4e-181 639.8 669 50.5
ATR0743G102 Amborella trichopoda HOM05D005402 ORTHO05D007036 2.6e-175 619.8 655 49.8
HPP92_012414 Vanilla planifolia HOM05D005402 ORTHO05D007036 7.7e-172 608.2 657 49.8
SGA_v2.0_scaffold7G03813 Striga asiatica HOM05D005402 ORTHO05D007036 7.5e-151 538.5 477 57.2
BcaB03g12559 Brassica carinata HOM05D005402 ORTHO05D007036 1.4e-144 517.7 424 62.7
SGA_v2.0_scaffold4G01907 Striga asiatica HOM05D005402 ORTHO05D007036 1.4e-144 517.7 622 47.6
Zm00001eb118290 Zea mays HOM05D005402 ORTHO05D007036 2.7e-140 503.4 522 50.2
Sc05g0009280 Simmondsia chinensis HOM05D005402 ORTHO05D007036 4.4e-135 486.1 356 67.1
EL10Ac3g06734 Beta vulgaris HOM05D005402 ORTHO05D007036 5.1e-131 472.6 361 64.3
Mapoly0165s0012 Marchantia polymorpha HOM05D005402 ORTHO05D007036 3.4e-127 459.9 652 38.8
CAN.G23.24 Capsicum annuum HOM05D005402 ORTHO05D007036 2.1e-121 440.7 269 82.2
SMO203G0067 Selaginella moellendorffii HOM05D005402 ORTHO05D007036 2.3e-107 394.0 643 36.4
Pp3c5_4450 Physcomitrium patens HOM05D005402 ORTHO05D007036 9.0e-104 382.1 657 35.6
AagrBONN_evm.TU.Sc2ySwM_228.882 Anthoceros agrestis HOM05D005402 ORTHO05D007036 3.4e-95 353.6 505 40.0
SEGI_35740 Sequoiadendron giganteum HOM05D005402 ORTHO05D007036 2.6e-87 327.4 359 46.2
Sc05g0009290 Simmondsia chinensis HOM05D005402 ORTHO05D007036 3.0e-83 313.9 283 53.0
Cpa.g.sc1199.5 Carica papaya HOM05D005402 ORTHO05D007036 6.9e-80 302.8 272 55.9
CBR_g31384 Chara braunii HOM05D005402 ORTHO05D007036 2.7e-76 290.8 755 28.5
EL10Ac3g06733 Beta vulgaris HOM05D005402 ORTHO05D007036 9.7e-66 255.8 356 40.7
Cre10.g442000 Chlamydomonas reinhardtii HOM05D005402 ORTHO05D007036 1.2e-63 248.8 699 27.5
RcHm_v2.0_Chr7g0223961 Rosa chinensis HOM05D005402 ORTHO05D007036 7.0e-56 223.0 264 48.1
RcHm_v2.0_Chr6g0291751 Rosa chinensis HOM05D005402 ORTHO05D007036 2.0e-47 194.9 239 45.6
RcHm_v2.0_Chr7g0223941 Rosa chinensis HOM05D005402 ORTHO05D007036 7.8e-31 139.8 80 75.0
RcHm_v2.0_Chr7g0223951 Rosa chinensis HOM05D005402 ORTHO05D007036 1.3e-30 139.0 127 56.7
SHI32968 Sapria himalayana HOM05D005402 ORTHO05D007036 2.3e-27 128.3 235 34.5
SalBow7G0548 Salvia bowleyana HOM05D005402 ORTHO05D037500 2.4e-24 118.2 84 69.0
SalBow5G5666 Salvia bowleyana HOM05D005402 ORTHO05D037500 5.4e-24 117.1 103 60.2
AagrBONN_evm.TU.Sc2ySwM_228.888 Anthoceros agrestis HOM05D005402 ORTHO05D007036 4.6e-23 114.0 101 49.5
MCO01G148 Micromonas commoda HOM05D005402 ORTHO05D007036 7.8e-23 113.2 206 30.6
SalBow1G2367 Salvia bowleyana HOM05D005402 ORTHO05D037500 1.1e-21 109.4 76 69.7
Cfa022130 Carpinus fangiana HOM05D005402 ORTHO05D007036 1.2e-20 105.9 206 32.0
AagrBONN_evm.TU.Sc2ySwM_228.894 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.1e-19 102.8 86 48.8
Zm00001eb129750 Zea mays HOM05D005402 ORTHO05D007036 2.9e-17 94.7 214 31.3
CARHR228840 Cardamine hirsuta HOM05D005402 ORTHO05D007036 4.9e-17 94.0 62 75.8
Zm00001eb238100 Zea mays HOM05D005402 ORTHO05D007036 1.1e-16 92.8 95 50.5
Hma1.2p1_0660F.1_g197590 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 5.4e-16 90.5 65 67.7
AagrBONN_evm.TU.Sc2ySwM_228.885 Anthoceros agrestis HOM05D005402 ORTHO05D007036 7.1e-16 90.1 166 34.9
A01p19620 Brassica napus HOM05D005402 ORTHO05D007036 3.0e-14 84.7 101 45.5
RcHm_v2.0_Chr6g0291761 Rosa chinensis HOM05D005402 ORTHO05D007036 1.1e-08 66.2 95 42.1


User provided reference genes

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