Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 6.4e-213 743.8 375 100.0
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 1.2e-179 633.3 341 91.8
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.4e-175 619.8 316 98.1
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.2e-174 616.7 341 90.9
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 6.1e-163 577.8 316 91.5
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 2.3e-162 575.9 339 85.5
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 3.8e-149 531.9 341 78.0
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 1.4e-146 523.5 344 76.2
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 6.8e-146 521.2 344 75.3
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 8.8e-146 520.8 341 76.5
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 1.7e-144 516.5 340 75.0
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 2.2e-144 516.2 332 77.4
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 1.8e-143 513.1 344 74.4
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 7.0e-143 511.1 333 75.4
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 5.9e-142 508.1 338 75.4
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 1.6e-139 500.0 331 75.2
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 2.3e-138 496.1 343 72.3
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 3.0e-138 495.7 327 76.8
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 4.0e-138 495.4 334 74.6
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 6.8e-138 494.6 326 75.5
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 8.9e-138 494.2 336 74.1
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 8.9e-138 494.2 327 76.1
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 3.4e-137 492.3 326 74.2
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 5.7e-137 491.5 341 71.8
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 7.5e-137 491.1 338 73.7
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 9.8e-137 490.7 334 74.3
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 9.8e-137 490.7 326 74.5
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 9.8e-137 490.7 353 71.4
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 9.8e-137 490.7 328 74.1
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 1.3e-136 490.3 326 76.1
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.3e-136 490.3 333 75.1
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.7e-136 490.0 340 73.2
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 3.7e-136 488.8 326 75.8
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 3.7e-136 488.8 367 68.1
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 3.7e-136 488.8 326 74.2
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 8.3e-136 487.6 326 73.3
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 1.1e-135 487.3 337 73.0
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 1.1e-135 487.3 332 74.1
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 3.1e-135 485.7 332 73.5
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 3.1e-135 485.7 313 78.3
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 4.1e-135 485.3 335 73.7
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 7.0e-135 484.6 325 74.2
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 1.2e-134 483.8 336 72.9
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 1.2e-134 483.8 371 67.1
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.6e-134 483.4 325 75.1
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 1.6e-134 483.4 326 73.9
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 2.7e-134 482.6 336 71.4
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 2.7e-134 482.6 336 71.4
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 3.5e-134 482.3 325 74.2
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 4.5e-134 481.9 326 74.8
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 5.9e-134 481.5 325 73.5
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.7e-133 479.9 332 74.1
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 2.3e-133 479.6 332 72.9
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 2.3e-133 479.6 344 70.1
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 5.0e-133 478.4 332 72.0
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 8.6e-133 477.6 340 72.1
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 1.5e-132 476.9 328 72.3
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 1.5e-132 476.9 343 71.7
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 2.8e-131 472.6 338 69.8
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 8.0e-131 471.1 329 72.6
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 2.3e-130 469.5 332 73.8
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 5.2e-130 468.4 321 72.9
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 5.2e-130 468.4 377 65.5
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 8.9e-130 467.6 329 70.5
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 1.5e-129 466.8 325 71.7
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 4.4e-129 465.3 308 76.9
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 4.4e-129 465.3 403 63.5
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 5.8e-129 464.9 321 70.4
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 1.3e-128 463.8 321 70.7
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.3e-128 463.8 327 71.6
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 1.7e-128 463.4 327 70.6
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 2.2e-128 463.0 331 69.5
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 2.2e-128 463.0 327 70.6
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 2.9e-128 462.6 325 71.4
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 3.7e-128 462.2 321 72.3
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 4.9e-128 461.8 332 68.7
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 4.9e-128 461.8 338 68.3
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 6.4e-128 461.5 334 68.3
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 8.3e-128 461.1 345 67.8
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 1.1e-127 460.7 328 68.3
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 1.4e-127 460.3 321 72.6
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 1.4e-127 460.3 325 71.1
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 1.9e-127 459.9 325 72.0
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 3.2e-127 459.1 313 74.1
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 3.2e-127 459.1 321 70.4
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 3.2e-127 459.1 322 69.9
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 4.1e-127 458.8 334 69.5
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 5.4e-127 458.4 316 72.2
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 7.0e-127 458.0 333 69.4
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 7.0e-127 458.0 333 68.5
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 7.0e-127 458.0 306 75.2
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 7.0e-127 458.0 324 71.0
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 7.0e-127 458.0 324 71.0
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 9.2e-127 457.6 333 68.5
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 9.2e-127 457.6 325 69.8
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 1.2e-126 457.2 333 68.5
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 1.2e-126 457.2 321 69.5
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 1.2e-126 457.2 321 70.1
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.2e-126 457.2 342 68.1
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 1.6e-126 456.8 327 70.0
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 2.0e-126 456.4 333 68.2
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 2.0e-126 456.4 332 69.9
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 6.0e-126 454.9 325 68.6
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 6.0e-126 454.9 365 64.1
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 7.8e-126 454.5 332 67.2
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 5.0e-125 451.8 334 69.2
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 1.9e-124 449.9 345 66.1
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 3.3e-124 449.1 326 69.3
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 9.5e-124 447.6 307 73.3
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 1.2e-123 447.2 325 69.5
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 8.0e-123 444.5 332 66.9
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.1e-122 444.1 323 69.7
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.4e-122 443.7 310 71.6
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 8.9e-122 441.0 339 67.6
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 2.0e-121 439.9 338 67.5
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 1.9e-119 433.3 323 68.4
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 2.7e-118 429.5 339 65.2
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 4.6e-118 428.7 326 66.9
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 2.3e-117 426.4 323 67.5
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 6.6e-117 424.9 381 59.3
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 8.6e-117 424.5 534 47.0
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 5.6e-116 421.8 333 65.2
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 4.0e-114 415.6 321 67.6
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 1.5e-113 413.7 270 75.6
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 3.4e-113 412.5 210 98.6
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 2.4e-111 406.4 327 64.5
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 1.3e-109 400.6 314 63.1
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 1.7e-104 383.6 253 74.7
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 2.9e-104 382.9 265 73.6
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 1.2e-102 377.5 324 61.1
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 2.3e-101 373.2 262 71.8
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 4.0e-98 362.5 326 58.9
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 1.4e-95 354.0 332 54.8
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 6.2e-91 338.6 227 75.8
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 1.8e-90 337.0 335 51.6
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 3.1e-90 336.3 206 80.6
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 3.8e-88 329.3 287 63.1
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 2.3e-85 320.1 209 73.7
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 1.6e-83 313.9 288 55.6
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 6.2e-83 312.0 222 71.2
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.1e-82 311.2 227 68.7
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 1.1e-79 301.2 267 61.8
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 6.1e-70 268.9 161 82.6
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 7.4e-68 261.9 387 41.9
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 4.5e-65 252.7 179 67.6
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 3.9e-61 239.6 162 71.6
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 2.0e-60 237.3 170 71.8
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 3.4e-57 226.5 218 58.3
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 3.8e-56 223.0 163 68.7
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 3.2e-55 219.9 177 65.0
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 5.3e-50 202.6 254 46.9
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 1.2e-46 191.4 327 41.0
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 3.5e-41 173.3 124 68.5
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 6.8e-37 159.1 193 49.2
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 3.8e-32 143.3 112 67.9
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 8.5e-32 142.1 258 36.0
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 8.8e-29 132.1 272 34.9
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 5.7e-28 129.4 385 31.4
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 5.9e-25 119.4 61 90.2
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.0e-24 118.6 112 52.7
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 2.8e-22 110.5 121 50.4
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 3.2e-18 97.1 57 78.9
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 3.6e-14 83.6 56 75.0
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 4.7e-14 83.2 65 67.7
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 1.4e-13 81.6 63 66.7
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 5.8e-12 76.3 67 58.2
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 3.7e-11 73.6 93 44.1


User provided reference genes

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