Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g014750.2 Solanum lycopersicum HOM05D027776 ORTHO05D019315 9.6e-86 320.1 158 100.0
Solyc02g014740.2 Solanum lycopersicum HOM05D027776 ORTHO05D019315 5.5e-81 304.3 158 95.6
Sopen02g004120 Solanum pennellii HOM05D027776 ORTHO05D019315 7.9e-80 300.4 158 95.6
PGSC0003DMG400010582 Solanum tuberosum HOM05D027776 ORTHO05D019315 2.7e-64 248.8 156 79.5
Peaxi162Scf00331g01020 Petunia axillaris HOM05D000538 ORTHO05D019315 1.9e-17 93.2 163 38.0
Nitab4.5_0000660g0070 Nicotiana tabacum HOM05D000538 ORTHO05D019315 3.6e-16 89.0 91 52.7
Nitab4.5_0018168g0010 Nicotiana tabacum HOM05D000538 ORTHO05D019315 1.8e-15 86.7 91 51.6
Nitab4.5_0004119g0040 Nicotiana tabacum HOM05D000538 ORTHO05D019315 1.2e-14 84.0 91 49.5
Lj2g0017985 Lotus japonicus HOM05D000538 ORTHO05D000614 6.6e-10 68.2 102 36.3
BcaC07g37349 Brassica carinata HOM05D000538 ORTHO05D000614 1.5e-09 67.0 87 40.2
C08p07930 Brassica napus HOM05D000538 ORTHO05D000614 1.5e-09 67.0 87 40.2
BolC8t47645H Brassica oleracea HOM05D000538 ORTHO05D000614 1.5e-09 67.0 87 40.2
SGA_v2.0_scaffold62G21365 Striga asiatica HOM05D000538 ORTHO05D000614 1.5e-09 67.0 106 34.9
MSTRG.14651 Avicennia marina HOM05D000538 ORTHO05D000614 1.9e-09 66.6 89 41.6
Prupe.3G046700 Prunus persica HOM05D002395 ORTHO05D000614 1.9e-09 66.6 87 40.2
Sp7g11180 Schrenkiella parvula HOM05D000538 ORTHO05D000614 1.9e-09 66.6 105 35.2
RcHm_v2.0_Chr5g0004541 Rosa chinensis HOM05D000538 ORTHO05D000614 9.5e-09 64.3 89 38.2
Atru.chr1.3753 Acer truncatum HOM05D000538 ORTHO05D000614 1.2e-08 63.9 75 44.0
Oeu058171.1 Olea europaea HOM05D000538 ORTHO05D000614 1.2e-08 63.9 80 42.5
BcaC02g10543 Brassica carinata HOM05D000538 ORTHO05D000614 1.6e-08 63.5 113 32.7
C04p27660 Brassica napus HOM05D000538 ORTHO05D000614 1.6e-08 63.5 113 32.7
BolC4t24311H Brassica oleracea HOM05D000538 ORTHO05D000614 1.6e-08 63.5 113 32.7
TWI38G1831 Tripterygium wilfordii HOM05D000538 ORTHO05D000614 2.1e-08 63.2 108 36.1
Aa31LG1G3240 Aethionema arabicum HOM05D000538 ORTHO05D000614 2.8e-08 62.8 130 30.8
Thhalv10023503m.g Eutrema salsugineum HOM05D000538 ORTHO05D000614 2.8e-08 62.8 120 32.5
TWI38G2228 Tripterygium wilfordii HOM05D000538 ORTHO05D000614 2.8e-08 62.8 82 41.5
Sp1g10140 Schrenkiella parvula HOM05D000538 ORTHO05D000614 4.7e-08 62.0 90 33.3
SGA_v2.0_scaffold52G19146 Striga asiatica HOM05D000538 ORTHO05D000614 4.7e-08 62.0 109 30.3
A03p67690 Brassica napus HOM05D000538 ORTHO05D000614 6.2e-08 61.6 101 32.7
A03p67700 Brassica napus HOM05D000538 ORTHO05D000614 6.2e-08 61.6 101 32.7
BraA01t02696Z Brassica rapa HOM05D000538 ORTHO05D000614 6.2e-08 61.6 101 32.7
BraA01t02697Z Brassica rapa HOM05D000538 ORTHO05D000614 6.2e-08 61.6 101 32.7
BraA01t02698Z Brassica rapa HOM05D000538 ORTHO05D000614 6.2e-08 61.6 101 32.7
Ciclev10015528m.g Citrus clementina HOM05D000538 ORTHO05D000614 6.2e-08 61.6 96 34.4
Lj6g0024738 Lotus japonicus HOM05D000538 ORTHO05D000614 6.2e-08 61.6 135 28.9
BcaC02g09411 Brassica carinata HOM05D000538 ORTHO05D000614 8.1e-08 61.2 103 31.1
C04p42350 Brassica napus HOM05D000538 ORTHO05D000614 8.1e-08 61.2 103 31.1
BolC4t25817H Brassica oleracea HOM05D000538 ORTHO05D000614 8.1e-08 61.2 103 31.1
Migut.H01546 Erythranthe guttata HOM05D000538 ORTHO05D000614 8.1e-08 61.2 96 36.5
Manes.07G017600 Manihot esculenta HOM05D000538 ORTHO05D000614 8.1e-08 61.2 135 30.4
SGA_v2.0_scaffold52G19023 Striga asiatica HOM05D000538 ORTHO05D000614 8.1e-08 61.2 105 33.3
SGA_v2.0_scaffold52G19080 Striga asiatica HOM05D000538 ORTHO05D000614 8.1e-08 61.2 105 33.3
SGA_v2.0_scaffold52G19155 Striga asiatica HOM05D000538 ORTHO05D000614 8.1e-08 61.2 105 33.3
A04p08610 Brassica napus HOM05D000538 ORTHO05D000614 1.1e-07 60.8 101 32.7
BolC4t26529H Brassica oleracea HOM05D000538 ORTHO05D000614 1.1e-07 60.8 105 32.4
BraA04t16555Z Brassica rapa HOM05D000538 ORTHO05D000614 1.1e-07 60.8 101 32.7
MD05G1335900 Malus domestica HOM05D000538 ORTHO05D000614 1.1e-07 60.8 98 33.7
Manes.16G016900 Manihot esculenta HOM05D000538 ORTHO05D000614 1.1e-07 60.8 116 32.8
Potri.001G293900 Populus trichocarpa HOM05D000538 ORTHO05D000614 1.1e-07 60.8 94 37.2
MSTRG.13164 Avicennia marina HOM05D000538 ORTHO05D000614 1.4e-07 60.5 69 42.0
Lalb_Chr05g0228411 Lupinus albus HOM05D000538 ORTHO05D000614 1.4e-07 60.5 73 39.7
Peaxi162Scf00030g00224 Petunia axillaris HOM05D000538 ORTHO05D000614 1.4e-07 60.5 101 36.6
SGA_v2.0_scaffold52G19083 Striga asiatica HOM05D000538 ORTHO05D000614 1.4e-07 60.5 93 35.5
CANSAT54G1163 Cannabis sativa HOM05D000538 ORTHO05D000614 1.8e-07 60.1 87 37.9
THA.LOC104822871 Tarenaya hassleriana HOM05D000538 ORTHO05D000614 1.8e-07 60.1 81 37.0
Oeu063070.2 Olea europaea HOM05D000538 ORTHO05D000614 2.3e-07 59.7 158 29.7
SGA_v2.0_scaffold62G21349 Striga asiatica HOM05D000538 ORTHO05D000614 2.3e-07 59.7 108 32.4
BraA04t17162Z Brassica rapa HOM05D000538 ORTHO05D000614 3.1e-07 59.3 99 33.3
CARHR011790 Cardamine hirsuta HOM05D000538 ORTHO05D000614 3.1e-07 59.3 120 28.3
Sp2g02820 Schrenkiella parvula HOM05D000538 ORTHO05D000614 3.1e-07 59.3 120 30.8
arahy.Tifrunner.gnm1.ann1.AC8M2L Arachis hypogaea HOM05D000538 ORTHO05D000614 4.0e-07 58.9 96 40.6
arahy.Tifrunner.gnm1.ann1.JZ11TB Arachis hypogaea HOM05D000538 ORTHO05D000614 4.0e-07 58.9 96 40.6
arahy.Tifrunner.gnm1.ann1.L9U4X5 Arachis hypogaea HOM05D000538 ORTHO05D000614 4.0e-07 58.9 96 40.6
CsaV3_7G003860 Cucumis sativus L. HOM05D000538 ORTHO05D000614 4.0e-07 58.9 111 30.6
Duzib052G0757 Durio zibethinus HOM05D000538 ORTHO05D000614 4.0e-07 58.9 110 32.7
Manes.17G030100 Manihot esculenta HOM05D000538 ORTHO05D000614 4.0e-07 58.9 110 35.5
Prupe.7G003400 Prunus persica HOM05D000538 ORTHO05D000614 4.0e-07 58.9 87 36.8
VMungo0540G0362 Vigna mungo HOM05D000538 ORTHO05D011169 4.0e-07 58.9 65 44.6
Rhsim06G0156300 Rhododendron simsii HOM05D000538 ORTHO05D000614 5.2e-07 58.5 109 32.1
SalBow5G1539 Salvia bowleyana HOM05D000538 ORTHO05D000614 5.2e-07 58.5 93 37.6
SGA_v2.0_scaffold12G06174 Striga asiatica HOM05D000538 ORTHO05D000614 5.2e-07 58.5 90 35.6
arahy.Tifrunner.gnm1.ann1.ZZ4VEM Arachis hypogaea HOM05D000538 ORTHO05D000614 6.8e-07 58.2 91 39.6
MSTRG.9015 Avicennia marina HOM05D000538 ORTHO05D000614 6.8e-07 58.2 85 38.8
BcaC02g08887 Brassica carinata HOM05D000538 ORTHO05D000614 6.8e-07 58.2 105 31.4
BcaB06g27693 Brassica carinata HOM05D000538 ORTHO05D000614 8.9e-07 57.8 156 27.6
A04p15220 Brassica napus HOM05D000538 ORTHO05D000614 8.9e-07 57.8 99 32.3
Dinv18944 Davidia involucrata HOM05D000538 ORTHO05D000614 8.9e-07 57.8 75 38.7
Nn1g03725 Nelumbo nucifera HOM05D000538 ORTHO05D000614 8.9e-07 57.8 94 36.2
PGSC0003DMG400030831 Solanum tuberosum HOM05D000538 ORTHO05D000614 8.9e-07 57.8 83 37.3
Cpa.g.sc8.251 Carica papaya HOM05D000538 ORTHO05D000614 1.2e-06 57.4 88 34.1
Nitab4.5_0000786g0080 Nicotiana tabacum HOM05D000538 ORTHO05D000614 1.2e-06 57.4 102 36.3
Sabra16G0183500 Salix brachista HOM05D000538 ORTHO05D000614 1.2e-06 57.4 89 39.3
Sopen04g029590 Solanum pennellii HOM05D000538 ORTHO05D000614 1.2e-06 57.4 83 37.3
SGA_v2.0_scaffold52G19049 Striga asiatica HOM05D000538 ORTHO05D000614 1.2e-06 57.4 139 31.7
BcaB07g31281 Brassica carinata HOM05D000538 ORTHO05D000614 1.5e-06 57.0 120 29.2
A03p67190 Brassica napus HOM05D000538 ORTHO05D000614 1.5e-06 57.0 114 29.8
BraA01t02756Z Brassica rapa HOM05D000538 ORTHO05D000614 1.5e-06 57.0 114 29.8
MELO3C018793.2 Cucumis melo HOM05D000538 ORTHO05D000614 1.5e-06 57.0 109 30.3
Gohir.A01G040800 Gossypium hirsutum HOM05D000538 ORTHO05D000614 1.5e-06 57.0 107 29.0
Lj2C275T5 Lonicera japonica HOM05D000538 ORTHO05D000614 1.5e-06 57.0 68 42.6
Nitab4.5_0008264g0010 Nicotiana tabacum HOM05D000538 ORTHO05D000614 1.5e-06 57.0 85 36.5
Sp7g04750 Schrenkiella parvula HOM05D000538 ORTHO05D000614 1.5e-06 57.0 91 34.1
THA.LOC104805998 Tarenaya hassleriana HOM05D000538 ORTHO05D000614 1.5e-06 57.0 86 36.0
Dinv10905 Davidia involucrata HOM05D000538 ORTHO05D000614 2.0e-06 56.6 78 35.9
Gohir.D01G028300 Gossypium hirsutum HOM05D000538 ORTHO05D000614 2.0e-06 56.6 107 29.0
Gorai.002G037800 Gossypium raimondii HOM05D000538 ORTHO05D000614 2.0e-06 56.6 107 29.0
Oeu051232.1 Olea europaea HOM05D000538 ORTHO05D000614 2.0e-06 56.6 89 39.3
Potri.009G088400 Populus trichocarpa HOM05D000538 ORTHO05D000614 2.0e-06 56.6 93 36.6
Sed0011252 Sechium edule HOM05D000538 ORTHO05D000614 2.0e-06 56.6 74 39.2
SGA_v2.0_scaffold52G19112 Striga asiatica HOM05D000538 ORTHO05D000614 2.0e-06 56.6 93 33.3
SGA_v2.0_scaffold62G21345 Striga asiatica HOM05D000538 ORTHO05D000614 2.0e-06 56.6 93 34.4
TWI39G0036 Tripterygium wilfordii HOM05D000538 ORTHO05D000614 2.0e-06 56.6 94 34.0
vmacro12238 Vaccinium macrocarpon HOM05D000538 ORTHO05D000614 2.0e-06 56.6 76 34.2
A03p66900 Brassica napus HOM05D000538 ORTHO05D000614 2.6e-06 56.2 95 32.6
BraA01t02790Z Brassica rapa HOM05D000538 ORTHO05D000614 2.6e-06 56.2 95 32.6
ClCG01G022290 Citrullus lanatus HOM05D000538 ORTHO05D000614 2.6e-06 56.2 83 37.3
FvH4_3g02930 Fragaria vesca HOM05D000538 ORTHO05D000614 2.6e-06 56.2 86 34.9
FAN21G0633 Fragaria x ananassa HOM05D000538 ORTHO05D000614 2.6e-06 56.2 89 34.8
FAN21G1131 Fragaria x ananassa HOM05D000538 ORTHO05D000614 2.6e-06 56.2 89 34.8
Lsat_1_v5_gn_3_43101 Lactuca sativa HOM05D000538 ORTHO05D000614 2.6e-06 56.2 94 36.2
Phvul.006G196300 Phaseolus vulgaris HOM05D000538 ORTHO05D000614 2.6e-06 56.2 76 39.5
Sabra11G0087400 Salix brachista HOM05D000538 ORTHO05D000614 2.6e-06 56.2 69 43.5
SalBow6G4402 Salvia bowleyana HOM05D000538 ORTHO05D000614 2.6e-06 56.2 70 41.4
SalBow6G5108 Salvia bowleyana HOM05D000538 ORTHO05D000614 2.6e-06 56.2 70 41.4
SGA_v2.0_scaffold52G19087 Striga asiatica HOM05D000538 ORTHO05D000614 2.6e-06 56.2 93 33.3
C04p49440 Brassica napus HOM05D000538 ORTHO05D000614 3.4e-06 55.8 105 30.5
MELO3C027126.2 Cucumis melo HOM05D000538 ORTHO05D000614 3.4e-06 55.8 71 39.4
CsaV3_6G049420 Cucumis sativus L. HOM05D000538 ORTHO05D000614 3.4e-06 55.8 71 39.4
FAN25G1625 Fragaria x ananassa HOM05D000538 ORTHO05D000614 3.4e-06 55.8 86 34.9
MBI18_g24145_MAGBIO Magnolia biondii HOM05D000538 ORTHO05D000614 3.4e-06 55.8 100 35.0
Nn4g26474 Nelumbo nucifera HOM05D000538 ORTHO05D000614 3.4e-06 55.8 137 29.9
Psat5g127240 Pisum sativum HOM05D000538 ORTHO05D000614 3.4e-06 55.8 103 34.0
THA.LOC104809520 Tarenaya hassleriana HOM05D000538 ORTHO05D000614 3.4e-06 55.8 94 33.0
VMungo0540G1345 Vigna mungo HOM05D000538 ORTHO05D000614 3.4e-06 55.8 91 36.3
Actinidia24277 Actinidia chinensis HOM05D000538 ORTHO05D000614 4.4e-06 55.5 87 35.6
AT4G00610 Arabidopsis thaliana HOM05D000538 ORTHO05D000614 4.4e-06 55.5 92 33.7
BcaB03g16075 Brassica carinata HOM05D000538 ORTHO05D000614 4.4e-06 55.5 91 31.9
BolC1t03848H Brassica oleracea HOM05D000538 ORTHO05D000614 4.4e-06 55.5 124 28.2
BraA01t02694Z Brassica rapa HOM05D000538 ORTHO05D000614 4.4e-06 55.5 91 34.1
COL.COLO4_13007 Corchorus olitorius HOM05D000538 ORTHO05D000614 4.4e-06 55.5 93 34.4
HanXRQChr01g0019011 Helianthus annuus HOM05D000538 ORTHO05D000614 4.4e-06 55.5 87 36.8
Lalb_Chr16g0392201 Lupinus albus HOM05D000538 ORTHO05D000614 4.4e-06 55.5 73 38.4
Rhsim11G0047000 Rhododendron simsii HOM05D000538 ORTHO05D000614 4.4e-06 55.5 93 32.3
Sabra11G0087800 Salix brachista HOM05D000538 ORTHO05D000614 4.4e-06 55.5 79 38.0
PGSC0003DMG400026196 Solanum tuberosum HOM05D000538 ORTHO05D000614 4.4e-06 55.5 67 41.8
Thecc.07G148000 Theobroma cacao HOM05D000538 ORTHO05D000614 4.4e-06 55.5 94 30.9
Actinidia05541 Actinidia chinensis HOM05D000538 ORTHO05D000614 5.8e-06 55.1 94 30.9
Ah.14g088490 Amaranthus hybridus HOM05D000538 ORTHO05D000614 5.8e-06 55.1 86 33.7
arahy.Tifrunner.gnm1.ann1.CHJC5X Arachis hypogaea HOM05D000538 ORTHO05D000614 5.8e-06 55.1 89 39.3
arahy.Tifrunner.gnm1.ann1.DZ7Z6Q Arachis hypogaea HOM05D000538 ORTHO05D000614 5.8e-06 55.1 96 37.5
BcaC06g31859 Brassica carinata HOM05D000538 ORTHO05D000614 5.8e-06 55.1 91 31.9
A01p30590 Brassica napus HOM05D000538 ORTHO05D000614 5.8e-06 55.1 113 29.2
BraA01t03191Z Brassica rapa HOM05D000538 ORTHO05D000614 5.8e-06 55.1 113 29.2
CiPaw.09G080200 Carya illinoinensis HOM05D000538 ORTHO05D000614 5.8e-06 55.1 124 27.4
Dinv18544 Davidia involucrata HOM05D000538 ORTHO05D000614 5.8e-06 55.1 84 32.1
Duzib268G1429 Durio zibethinus HOM05D000538 ORTHO05D000614 5.8e-06 55.1 94 31.9
Migut.M01263 Erythranthe guttata HOM05D000538 ORTHO05D000614 5.8e-06 55.1 94 34.0
Sc01g0008550 Simmondsia chinensis HOM05D000538 ORTHO05D000614 5.8e-06 55.1 90 34.4
SGA_v2.0_scaffold52G19085 Striga asiatica HOM05D000538 ORTHO05D000614 5.8e-06 55.1 67 35.8
SGA_v2.0_scaffold52G19092 Striga asiatica HOM05D000538 ORTHO05D000614 5.8e-06 55.1 67 35.8
EL10As6g23704 Beta vulgaris HOM05D000538 ORTHO05D000614 7.6e-06 54.7 115 27.0
Gohir.A13G018100 Gossypium hirsutum HOM05D000538 ORTHO05D000614 7.6e-06 54.7 94 31.9
Hma1.2p1_0439F.1_g153220 Hydrangea macrophylla HOM05D000538 ORTHO05D000614 7.6e-06 54.7 87 34.5
Actinidia26954 Actinidia chinensis HOM05D000538 ORTHO05D000614 9.9e-06 54.3 94 31.9
BcaC04g22347 Brassica carinata HOM05D000538 ORTHO05D000614 9.9e-06 54.3 90 32.2
C09p20300 Brassica napus HOM05D000538 ORTHO05D000614 9.9e-06 54.3 90 32.2
BolC9t54934H Brassica oleracea HOM05D000538 ORTHO05D000614 9.9e-06 54.3 90 32.2
Haze_06686 Corylus avellana HOM05D000538 ORTHO05D000614 9.9e-06 54.3 79 36.7
RcHm_v2.0_Chr2g0160351 Rosa chinensis HOM05D000538 ORTHO05D000614 9.9e-06 54.3 87 35.6


User provided reference genes

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