Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g014190.4 Solanum lycopersicum HOM05D003919 ORTHO05D004906 0.0e+00 6056.9 2981 100.0
Sopen02g003520 Solanum pennellii HOM05D003919 ORTHO05D004906 0.0e+00 5975.6 3018 97.7
Peaxi162Scf00363g00329 Petunia axillaris HOM05D003919 ORTHO05D004906 0.0e+00 5218.7 3010 85.0
Nitab4.5_0000405g0040 Nicotiana tabacum HOM05D003919 ORTHO05D004906 0.0e+00 4471.8 3035 75.1
CAN.G157.22 Capsicum annuum HOM05D003919 ORTHO05D004906 0.0e+00 4372.0 2351 90.7
Nitab4.5_0003853g0020 Nicotiana tabacum HOM05D003919 ORTHO05D004906 0.0e+00 4359.7 2936 75.3
Cc11_g02410 Coffea canephora HOM05D003919 ORTHO05D004906 0.0e+00 4208.3 3030 68.0
CSS0046709 Camellia sinensis var. sinensis HOM05D003919 ORTHO05D004906 0.0e+00 4165.5 3032 68.1
Cfa008737 Carpinus fangiana HOM05D003919 ORTHO05D004906 0.0e+00 4110.1 3035 66.6
Actinidia04322 Actinidia chinensis HOM05D003919 ORTHO05D004906 0.0e+00 4100.8 3018 67.3
DCAR_026901 Daucus carota HOM05D003919 ORTHO05D004906 0.0e+00 4097.0 3031 65.9
Thecc.02G160300 Theobroma cacao HOM05D003919 ORTHO05D004906 0.0e+00 4048.8 3048 65.2
vmacro10895 Vaccinium macrocarpon HOM05D003919 ORTHO05D004906 0.0e+00 4048.8 3105 64.9
Ciclev10030469m.g Citrus clementina HOM05D003919 ORTHO05D004906 0.0e+00 4043.4 3026 65.1
Haze_11754 Corylus avellana HOM05D003919 ORTHO05D004906 0.0e+00 4041.5 3157 63.8
Atru.chr11.1166 Acer truncatum HOM05D003919 ORTHO05D004906 0.0e+00 4040.7 3031 64.9
Prupe.1G347000 Prunus persica HOM05D003919 ORTHO05D004906 0.0e+00 4038.0 3026 65.2
Migut.J01108 Erythranthe guttata HOM05D003919 ORTHO05D004906 0.0e+00 4032.3 3016 65.3
RcHm_v2.0_Chr4g0446631 Rosa chinensis HOM05D003919 ORTHO05D004906 0.0e+00 4029.6 3037 65.0
FvH4_4g36870 Fragaria vesca HOM05D003919 ORTHO05D004906 0.0e+00 4015.3 3031 64.6
Gohir.D12G137500 Gossypium hirsutum HOM05D003919 ORTHO05D004906 0.0e+00 4009.9 3049 64.2
Gorai.008G149000 Gossypium raimondii HOM05D003919 ORTHO05D004906 0.0e+00 4006.8 3049 64.2
FAN17G2968 Fragaria x ananassa HOM05D003919 ORTHO05D004906 0.0e+00 4003.4 3037 64.3
Duzib132G0455 Durio zibethinus HOM05D003919 ORTHO05D004906 0.0e+00 3993.7 3039 64.2
MD16G1001800 Malus domestica HOM05D003919 ORTHO05D004906 0.0e+00 3988.3 3025 64.5
Sabra05G0077100 Salix brachista HOM05D003919 ORTHO05D004906 0.0e+00 3951.4 3039 63.4
Potri.005G093000 Populus trichocarpa HOM05D003919 ORTHO05D004906 0.0e+00 3944.4 3041 63.3
Lsat_1_v5_gn_8_31660 Lactuca sativa HOM05D003919 ORTHO05D004906 0.0e+00 3934.8 3024 64.9
TWI53G0046 Tripterygium wilfordii HOM05D003919 ORTHO05D004906 0.0e+00 3929.8 3028 63.6
ECA233G1217 Erigeron canadensis HOM05D003919 ORTHO05D004906 0.0e+00 3928.6 3012 64.4
HanXRQChr12g0366421 Helianthus annuus HOM05D003919 ORTHO05D004906 0.0e+00 3924.8 3020 64.4
Rhsim09G0081500 Rhododendron simsii HOM05D003919 ORTHO05D004906 0.0e+00 3915.5 2955 65.5
FAN07G2510 Fragaria x ananassa HOM05D003919 ORTHO05D004906 0.0e+00 3899.0 3047 63.1
Gohir.A12G134051 Gossypium hirsutum HOM05D003919 ORTHO05D004906 0.0e+00 3895.5 3029 62.9
Nn4g24949 Nelumbo nucifera HOM05D003919 ORTHO05D004906 0.0e+00 3873.2 3044 62.4
Medtr1g037310 Medicago truncatula HOM05D003919 ORTHO05D004906 0.0e+00 3870.1 3027 63.0
Lj2g0026278 Lotus japonicus HOM05D003919 ORTHO05D004906 0.0e+00 3854.7 3030 62.5
QL03p046003 Quercus lobata HOM05D003919 ORTHO05D004906 0.0e+00 3848.5 3584 55.8
Glyma.20G003400 Glycine max HOM05D003919 ORTHO05D004906 0.0e+00 3839.3 3027 62.0
TPR.G8246 Trifolium pratense HOM05D003919 ORTHO05D004906 0.0e+00 3834.6 3027 62.1
Sed0027848 Sechium edule HOM05D003919 ORTHO05D004906 0.0e+00 3834.3 3032 62.2
SGA_v2.0_scaffold17G08205 Striga asiatica HOM05D003919 ORTHO05D004906 0.0e+00 3814.2 3112 61.3
PSO782G3793 Papaver somniferum HOM05D003919 ORTHO05D004906 0.0e+00 3808.8 3040 61.6
MELO3C023597.2 Cucumis melo HOM05D003919 ORTHO05D004906 0.0e+00 3806.5 3021 62.0
CsaV3_7G030590 Cucumis sativus L. HOM05D003919 ORTHO05D004906 0.0e+00 3806.5 3021 61.8
Psat6g099280 Pisum sativum HOM05D003919 ORTHO05D004906 0.0e+00 3789.6 3053 61.2
Hund24370 Selenicereus undatus HOM05D003919 ORTHO05D004906 0.0e+00 3776.1 3024 61.3
Eucgr.J00863 Eucalyptus grandis HOM05D003919 ORTHO05D004906 0.0e+00 3770.3 3026 61.4
AUR62015231 Chenopodium quinoa HOM05D003919 ORTHO05D004906 0.0e+00 3759.1 3020 61.4
AUR62017695 Chenopodium quinoa HOM05D003919 ORTHO05D004906 0.0e+00 3756.5 3023 61.2
ClCG09G004560 Citrullus lanatus HOM05D003919 ORTHO05D004906 0.0e+00 3749.1 3091 60.3
PGR044G0490 Punica granatum HOM05D003919 ORTHO05D004906 0.0e+00 3724.5 3013 60.9
A03p46400 Brassica napus HOM05D003919 ORTHO05D004906 0.0e+00 3719.1 3019 60.2
BraA03t13766Z Brassica rapa HOM05D003919 ORTHO05D004906 0.0e+00 3715.6 3019 60.2
THA.LOC104819381 Tarenaya hassleriana HOM05D003919 ORTHO05D004906 0.0e+00 3712.9 3024 60.4
AL6G34300 Arabidopsis lyrata HOM05D003919 ORTHO05D004906 0.0e+00 3710.2 3017 60.1
Thhalv10003499m.g Eutrema salsugineum HOM05D003919 ORTHO05D004906 0.0e+00 3710.2 3017 59.9
Carub.0006s2090 Capsella rubella HOM05D003919 ORTHO05D004906 0.0e+00 3709.8 3018 60.1
Ah.01g012280 Amaranthus hybridus HOM05D003919 ORTHO05D004906 0.0e+00 3707.1 3009 60.8
AT5G23110 Arabidopsis thaliana HOM05D003919 ORTHO05D004906 0.0e+00 3701.8 3017 60.1
BolC7t44964H Brassica oleracea HOM05D003919 ORTHO05D004906 0.0e+00 3698.7 3018 60.1
CARHR190420 Cardamine hirsuta HOM05D003919 ORTHO05D004906 0.0e+00 3698.7 3019 59.9
Aa31LG11G2600 Aethionema arabicum HOM05D003919 ORTHO05D004906 0.0e+00 3686.0 3018 59.6
Sp2g24010 Schrenkiella parvula HOM05D003919 ORTHO05D004906 0.0e+00 3669.4 3017 59.5
Aqoxy3G04259 Aquilegia oxysepala HOM05D003919 ORTHO05D004906 0.0e+00 3647.4 3035 59.5
EL10Ac9g22945 Beta vulgaris HOM05D003919 ORTHO05D004906 0.0e+00 3644.7 3024 59.9
Ca_25292_v3 Cicer arietinum L. HOM05D003919 ORTHO05D004906 0.0e+00 3633.6 2862 62.4
FAN12G0111 Fragaria x ananassa HOM05D003919 ORTHO05D004906 0.0e+00 3617.8 3033 60.1
Glyma.09G282200 Glycine max HOM05D003919 ORTHO05D004906 0.0e+00 3610.8 2836 61.8
COL.COLO4_13755 Corchorus olitorius HOM05D003919 ORTHO05D004906 0.0e+00 3603.5 2726 64.3
TAR374G1487 Trochodendron aralioides HOM05D003919 ORTHO05D004906 0.0e+00 3561.5 2686 64.7
ATR0618G139 Amborella trichopoda HOM05D003919 ORTHO05D004906 0.0e+00 3548.8 3023 58.4
Manes.04G066100 Manihot esculenta HOM05D003919 ORTHO05D004906 0.0e+00 3489.1 2672 62.8
Zm00001eb066370 Zea mays HOM05D003919 ORTHO05D004906 0.0e+00 3297.7 3038 53.9
CiPaw.05G168700 Carya illinoinensis HOM05D003919 ORTHO05D004906 0.0e+00 3293.1 2352 67.7
Sc06g0007940 Simmondsia chinensis HOM05D003919 ORTHO05D004906 0.0e+00 3290.7 2637 61.4
GSVIVG01012044001 Vitis vinifera HOM05D003919 ORTHO05D004906 0.0e+00 3093.5 3010 54.9
C07p44420 Brassica napus HOM05D003919 ORTHO05D004906 0.0e+00 3012.6 2517 58.8
Oeu055859.1 Olea europaea HOM05D003919 ORTHO05D004906 0.0e+00 2850.5 2792 53.9
Mapoly0175s0011 Marchantia polymorpha HOM05D003919 ORTHO05D004906 0.0e+00 2778.8 3096 47.3
CDE08G0505 Ceratophyllum demersum HOM05D003919 ORTHO05D004906 0.0e+00 2765.7 2346 57.4
AagrBONN_evm.TU.Sc2ySwM_344.4345 Anthoceros agrestis HOM05D003919 ORTHO05D004906 0.0e+00 2696.0 3072 46.0
Os04g0675101 Oryza sativa ssp. japonica HOM05D003919 ORTHO05D004906 0.0e+00 2668.3 2352 56.0
Pp3c9_15860 Physcomitrium patens HOM05D003919 ORTHO05D004906 0.0e+00 2650.9 3053 45.6
Lj6A719G43 Lonicera japonica HOM05D003919 ORTHO05D004906 0.0e+00 2646.3 1893 69.0
Lalb_Chr04g0258931 Lupinus albus HOM05D003919 ORTHO05D004906 0.0e+00 2520.3 3026 44.9
Dinv11717 Davidia involucrata HOM05D003919 ORTHO05D004906 0.0e+00 2461.0 1736 69.2
SEGI_11727 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 0.0e+00 2451.8 2297 53.0
SMO164G0254 Selaginella moellendorffii HOM05D003919 ORTHO05D004906 0.0e+00 2416.7 3024 43.2
arahy.Tifrunner.gnm1.ann1.FE7SUA Arachis hypogaea HOM05D003919 ORTHO05D004906 0.0e+00 2288.5 1768 64.2
Lj6C719G10 Lonicera japonica HOM05D003919 ORTHO05D004906 0.0e+00 1578.5 1122 69.3
MCO02G364 Micromonas commoda HOM05D003919 ORTHO05D004906 0.0e+00 1467.2 3363 32.3
Cpa.g.sc0.155 Carica papaya HOM05D003919 ORTHO05D004906 0.0e+00 1186.0 1094 56.2
Cre01.g044850 Chlamydomonas reinhardtii HOM05D003919 ORTHO05D004906 5.0e-292 1009.6 4196 24.9
Gohir.A12G133950 Gossypium hirsutum HOM05D003919 ORTHO05D004906 7.0e-278 962.6 641 70.5
Cpa.g.sc0.156 Carica papaya HOM05D003919 ORTHO05D004906 4.7e-274 949.9 1343 41.3
HPP92_012909 Vanilla planifolia HOM05D003919 ORTHO05D004906 4.7e-274 949.9 703 67.1
CAN.G157.23 Capsicum annuum HOM05D003919 ORTHO05D004906 4.9e-255 886.7 494 89.3
Phvul.003G005926 Phaseolus vulgaris HOM05D003919 ORTHO05D004906 1.3e-239 835.5 745 55.3
HPP92_012908 Vanilla planifolia HOM05D003919 ORTHO05D004906 3.1e-225 787.7 1324 36.9
CiPaw.05G168800 Carya illinoinensis HOM05D003919 ORTHO05D004906 2.6e-224 784.6 672 59.1
GSVIVG01014936001 Vitis vinifera HOM05D003919 ORTHO05D004906 3.0e-212 744.6 852 47.8
HPP92_012876 Vanilla planifolia HOM05D003919 ORTHO05D004906 3.8e-199 701.0 1893 30.1
SEGI_18724 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 7.9e-181 640.2 620 50.5
CDE08G0032 Ceratophyllum demersum HOM05D003919 ORTHO05D004906 8.8e-156 557.0 587 49.2
FAN25G1432 Fragaria x ananassa HOM05D003919 ORTHO05D004906 1.4e-145 523.1 559 49.6
FAN14G1298 Fragaria x ananassa HOM05D003919 ORTHO05D004906 4.0e-140 505.0 791 38.7
SEGI_14080 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 6.0e-136 491.1 332 72.3
Psat4g123280 Pisum sativum HOM05D003919 ORTHO05D004906 1.7e-122 446.4 362 57.2
VMungo0251G1503 Vigna mungo HOM05D003919 ORTHO05D004906 6.4e-122 444.5 350 64.6
arahy.Tifrunner.gnm1.ann1.5S361I Arachis hypogaea HOM05D003919 ORTHO05D004906 5.8e-115 421.4 333 65.5
TAR374G0728 Trochodendron aralioides HOM05D003919 ORTHO05D004906 2.2e-114 419.5 320 66.9
FAN27G1315 Fragaria x ananassa HOM05D003919 ORTHO05D004906 2.7e-104 386.0 418 50.7
FAN22G1631 Fragaria x ananassa HOM05D003919 ORTHO05D004906 1.5e-94 353.6 267 68.9
FAN04G3043 Fragaria x ananassa HOM05D003919 ORTHO05D004906 1.5e-83 317.0 210 67.6
SEGI_33576 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 6.5e-74 285.0 223 58.3
SEGI_33076 Sequoiadendron giganteum HOM05D003919 ORTHO05D004188 3.0e-71 276.2 520 36.3
Cpa.g.sc0.157 Carica papaya HOM05D003919 ORTHO05D004906 8.2e-69 268.1 241 57.3
MBI03_g34502_MAGBIO Magnolia biondii HOM05D003919 ORTHO05D004906 1.5e-67 263.8 248 56.5
TAR374G1126 Trochodendron aralioides HOM05D003919 ORTHO05D036952 9.7e-62 244.6 296 44.9
Psat0s1455g0040 Pisum sativum HOM05D003919 ORTHO05D004906 1.3e-58 234.2 204 59.8
Gohir.A12G134001 Gossypium hirsutum HOM05D003919 ORTHO05D004906 5.5e-57 228.8 164 62.8
Cpa.g.sc0.159 Carica papaya HOM05D003919 ORTHO05D004906 2.4e-52 213.4 121 81.8
C07p44430 Brassica napus HOM05D003919 ORTHO05D004906 1.1e-49 204.5 109 89.9
COL.COLO4_13756 Corchorus olitorius HOM05D003919 ORTHO05D004906 1.1e-49 204.5 115 86.1
Oeu055860.1 Olea europaea HOM05D003919 ORTHO05D004906 1.1e-49 204.5 107 91.6
MBI03_g34501_MAGBIO Magnolia biondii HOM05D003919 ORTHO05D004906 6.1e-48 198.7 113 83.2
VMungo1383G1759 Vigna mungo HOM05D003919 ORTHO05D009038 6.8e-47 195.3 228 42.1
HPP92_012883 Vanilla planifolia HOM05D000456 ORTHO05D004906 2.2e-45 190.3 116 79.3
SEGI_22186 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 4.1e-44 186.0 108 79.6
Psat1g095160 Pisum sativum HOM05D003919 ORTHO05D004906 5.9e-43 182.2 151 53.6
SEGI_20628 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 2.3e-42 180.3 157 56.1
HPP92_012877 Vanilla planifolia HOM05D003919 ORTHO05D004906 2.3e-39 170.2 132 61.4
HPP92_012910 Vanilla planifolia HOM05D003919 ORTHO05D004906 1.2e-38 167.9 102 79.4
VMungo1383G1539 Vigna mungo HOM05D003919 ORTHO05D004906 2.6e-38 166.8 163 50.3
Psat1g148120 Pisum sativum HOM05D003919 ORTHO05D002405 1.9e-33 150.6 132 55.3
Nitab4.5_0003853g0040 Nicotiana tabacum HOM05D003919 ORTHO05D043505 1.7e-29 137.5 84 83.3
Oeu025294.1 Olea europaea HOM05D003919 ORTHO05D036952 2.7e-27 130.2 149 47.7
Psat0s760g0040 Pisum sativum HOM05D003919 ORTHO05D004906 6.8e-23 115.5 217 34.1
Os04g0675200 Oryza sativa ssp. japonica HOM05D003919 ORTHO05D004906 1.6e-19 104.4 126 42.9
Cpa.g.sc0.154 Carica papaya HOM05D003919 ORTHO05D043505 1.6e-16 94.4 87 52.9
Lsat_1_v5_gn_5_23900 Lactuca sativa HOM05D003509 ORTHO05D004205 2.8e-16 93.6 364 25.0
Oeu014156.1 Olea europaea HOM05D003919 ORTHO05D036952 2.8e-16 93.6 151 35.1
FvH4_5g39264 Fragaria vesca HOM05D000731 ORTHO05D004906 2.2e-13 84.0 49 85.7
FAN08G1746 Fragaria x ananassa HOM05D003919 ORTHO05D005006 2.2e-13 84.0 83 59.0
GSVIVG01012339001 Vitis vinifera HOM05D003353 ORTHO05D003751 2.2e-13 84.0 149 40.9
FAN28G0606 Fragaria x ananassa HOM05D001114 ORTHO05D000940 6.4e-13 82.4 70 52.9
Ca_30179_v3 Cicer arietinum L. HOM05D003919 ORTHO05D004906 5.4e-12 79.3 776 21.0
Psat4g139360 Pisum sativum HOM05D007669 ORTHO05D009624 2.1e-11 77.4 75 46.7
Oeu055858.1 Olea europaea HOM05D003919 ORTHO05D004906 1.0e-10 75.1 69 53.6
Psat7g249360 Pisum sativum HOM05D001947 ORTHO05D021361 2.3e-10 73.9 59 52.5
Ah.01g012290 Amaranthus hybridus HOM05D003919 ORTHO05D004906 1.1e-09 71.6 956 21.3
Lsat_1_v5_gn_9_102121 Lactuca sativa HOM05D000669 ORTHO05D000679 6.2e-08 65.9 71 40.8
Psat1g142640 Pisum sativum HOM05D006946 ORTHO05D008634 6.2e-08 65.9 58 51.7
Lalb_Chr01g0013021 Lupinus albus HOM05D003919 ORTHO05D004906 1.1e-07 65.1 37 73.0
SEGI_09016 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 1.4e-07 64.7 46 60.9
Mapoly0211s0017 Marchantia polymorpha HOM05D001677 ORTHO05D001682 3.1e-07 63.5 357 24.4
HanXRQChr08g0218771 Helianthus annuus HOM05D003919 ORTHO05D004906 8.9e-07 62.0 499 23.2


User provided reference genes

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