Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g014180.2 Solanum lycopersicum HOM05D003919 ORTHO05D004906 0.0e+00 2274.6 1137 100.0
Sopen02g003520 Solanum pennellii HOM05D003919 ORTHO05D004906 0.0e+00 2168.7 1095 98.6
Nitab4.5_0000405g0040 Nicotiana tabacum HOM05D003919 ORTHO05D004906 0.0e+00 1935.6 1096 88.3
Peaxi162Scf00363g00321 Petunia axillaris HOM05D003919 ORTHO05D004906 0.0e+00 1923.7 1089 87.1
Nitab4.5_0023098g0010 Nicotiana tabacum HOM05D003919 ORTHO05D004906 0.0e+00 1779.6 996 89.0
Dinv11717 Davidia involucrata HOM05D003919 ORTHO05D004906 0.0e+00 1530.8 1099 69.2
Cc11_g02410 Coffea canephora HOM05D003919 ORTHO05D004906 0.0e+00 1486.5 1096 67.1
Oeu055858.1 Olea europaea HOM05D003919 ORTHO05D004906 0.0e+00 1454.9 1096 65.1
CSS0046709 Camellia sinensis var. sinensis HOM05D003919 ORTHO05D004906 0.0e+00 1437.6 1099 65.6
Haze_11754 Corylus avellana HOM05D003919 ORTHO05D004906 0.0e+00 1426.0 1106 64.2
Cfa008737 Carpinus fangiana HOM05D003919 ORTHO05D004906 0.0e+00 1424.1 1106 63.8
vmacro10895 Vaccinium macrocarpon HOM05D003919 ORTHO05D004906 0.0e+00 1417.5 1105 63.9
Migut.J01108 Erythranthe guttata HOM05D003919 ORTHO05D004906 0.0e+00 1412.5 1100 63.5
QL03p046003 Quercus lobata HOM05D003919 ORTHO05D004906 0.0e+00 1411.0 1095 64.2
DCAR_026901 Daucus carota HOM05D003919 ORTHO05D004906 0.0e+00 1404.8 1092 63.6
Prupe.1G347000 Prunus persica HOM05D003919 ORTHO05D004906 0.0e+00 1398.3 1101 63.9
Rhsim09G0081500 Rhododendron simsii HOM05D003919 ORTHO05D004906 0.0e+00 1396.3 1097 63.2
Hund24370 Selenicereus undatus HOM05D003919 ORTHO05D004906 0.0e+00 1389.0 1101 62.9
Ciclev10030469m.g Citrus clementina HOM05D003919 ORTHO05D004906 0.0e+00 1388.6 1104 63.0
FAN17G2968 Fragaria x ananassa HOM05D003919 ORTHO05D004906 0.0e+00 1388.6 1103 64.1
FvH4_4g36870 Fragaria vesca HOM05D003919 ORTHO05D004906 0.0e+00 1382.9 1103 63.9
MD16G1001800 Malus domestica HOM05D003919 ORTHO05D004906 0.0e+00 1382.1 1098 63.3
RcHm_v2.0_Chr4g0446631 Rosa chinensis HOM05D003919 ORTHO05D004906 0.0e+00 1382.1 1103 63.8
Potri.005G093000 Populus trichocarpa HOM05D003919 ORTHO05D004906 0.0e+00 1381.3 1126 62.6
Sabra05G0077100 Salix brachista HOM05D003919 ORTHO05D004906 0.0e+00 1379.8 1104 62.9
FAN12G0111 Fragaria x ananassa HOM05D003919 ORTHO05D004906 0.0e+00 1379.0 1103 63.6
FAN07G2510 Fragaria x ananassa HOM05D003919 ORTHO05D004906 0.0e+00 1370.1 1103 63.3
Manes.04G066100 Manihot esculenta HOM05D003919 ORTHO05D004906 0.0e+00 1370.1 1099 62.6
Duzib132G0455 Durio zibethinus HOM05D003919 ORTHO05D004906 0.0e+00 1368.2 1101 62.6
TAR374G1487 Trochodendron aralioides HOM05D003919 ORTHO05D004906 0.0e+00 1363.6 1107 63.1
Actinidia04322 Actinidia chinensis HOM05D003919 ORTHO05D004906 0.0e+00 1353.2 1098 62.4
COL.COLO4_13755 Corchorus olitorius HOM05D003919 ORTHO05D004906 0.0e+00 1349.0 1101 61.6
TWI53G0046 Tripterygium wilfordii HOM05D003919 ORTHO05D004906 0.0e+00 1347.8 1099 61.0
EL10Ac9g22945 Beta vulgaris HOM05D003919 ORTHO05D004906 0.0e+00 1346.3 1096 61.7
Gorai.008G149000 Gossypium raimondii HOM05D003919 ORTHO05D004906 0.0e+00 1344.3 1095 61.3
Gohir.D12G137500 Gossypium hirsutum HOM05D003919 ORTHO05D004906 0.0e+00 1340.9 1095 61.2
Thecc.02G160300 Theobroma cacao HOM05D003919 ORTHO05D004906 0.0e+00 1340.1 1101 62.4
AUR62017695 Chenopodium quinoa HOM05D003919 ORTHO05D004906 0.0e+00 1337.8 1099 61.1
AUR62015231 Chenopodium quinoa HOM05D003919 ORTHO05D004906 0.0e+00 1328.2 1097 61.3
Eucgr.J00863 Eucalyptus grandis HOM05D003919 ORTHO05D004906 0.0e+00 1319.7 1096 59.9
Lalb_Chr04g0258931 Lupinus albus HOM05D003919 ORTHO05D004906 0.0e+00 1318.5 1102 59.8
Dinv01184 Davidia involucrata HOM05D003919 ORTHO05D004906 0.0e+00 1317.0 960 68.9
PGR044G0490 Punica granatum HOM05D003919 ORTHO05D004906 0.0e+00 1311.6 1097 59.4
Sc06g0007940 Simmondsia chinensis HOM05D003919 ORTHO05D004906 0.0e+00 1310.8 1109 60.1
HanXRQChr12g0366421 Helianthus annuus HOM05D003919 ORTHO05D004906 0.0e+00 1303.1 1092 59.9
Phvul.003G005926 Phaseolus vulgaris HOM05D003919 ORTHO05D004906 0.0e+00 1302.0 1106 58.7
SGA_v2.0_scaffold17G08205 Striga asiatica HOM05D003919 ORTHO05D004906 0.0e+00 1297.0 1076 60.7
TPR.G8246 Trifolium pratense HOM05D003919 ORTHO05D004906 0.0e+00 1295.0 1105 58.6
Medtr1g037310 Medicago truncatula HOM05D003919 ORTHO05D004906 0.0e+00 1294.3 1108 59.0
Glyma.20G003400 Glycine max HOM05D003919 ORTHO05D004906 0.0e+00 1293.5 1106 58.7
Nn4g24949 Nelumbo nucifera HOM05D003919 ORTHO05D004906 0.0e+00 1290.0 1103 59.2
Glyma.09G282200 Glycine max HOM05D003919 ORTHO05D004906 0.0e+00 1288.9 1113 58.3
Psat6g099280 Pisum sativum HOM05D003919 ORTHO05D004906 0.0e+00 1287.3 1106 58.5
ECA233G1217 Erigeron canadensis HOM05D003919 ORTHO05D004906 0.0e+00 1283.1 1089 59.0
ClCG09G004560 Citrullus lanatus HOM05D003919 ORTHO05D004906 0.0e+00 1281.5 1102 58.7
Sed0027848 Sechium edule HOM05D003919 ORTHO05D004906 0.0e+00 1281.5 1105 58.9
CsaV3_7G030590 Cucumis sativus L. HOM05D003919 ORTHO05D004906 0.0e+00 1280.4 1105 58.7
Lsat_1_v5_gn_8_31660 Lactuca sativa HOM05D003919 ORTHO05D004906 0.0e+00 1279.2 1088 60.1
Lj2g0026278 Lotus japonicus HOM05D003919 ORTHO05D004906 0.0e+00 1276.5 1104 58.2
Ca_30179_v3 Cicer arietinum L. HOM05D003919 ORTHO05D004906 0.0e+00 1272.7 1073 59.6
THA.LOC104819381 Tarenaya hassleriana HOM05D003919 ORTHO05D004906 0.0e+00 1268.8 1090 57.8
MELO3C023597.2 Cucumis melo HOM05D003919 ORTHO05D004906 0.0e+00 1267.3 1100 57.9
PSO782G3793 Papaver somniferum HOM05D003919 ORTHO05D004906 0.0e+00 1250.0 1106 58.0
CARHR190420 Cardamine hirsuta HOM05D003919 ORTHO05D004906 0.0e+00 1247.6 1091 56.7
Aa31LG11G2600 Aethionema arabicum HOM05D003919 ORTHO05D004906 0.0e+00 1240.7 1091 57.0
Thhalv10003499m.g Eutrema salsugineum HOM05D003919 ORTHO05D004906 0.0e+00 1240.3 1093 56.8
BolC7t44964H Brassica oleracea HOM05D003919 ORTHO05D004906 0.0e+00 1238.0 1087 57.3
Sp2g24010 Schrenkiella parvula HOM05D003919 ORTHO05D004906 0.0e+00 1237.2 1114 55.7
Lj6P719T30 Lonicera japonica HOM05D003919 ORTHO05D004906 0.0e+00 1236.9 906 67.3
Aqoxy3G04259 Aquilegia oxysepala HOM05D003919 ORTHO05D004906 0.0e+00 1225.7 1103 58.6
A03p46400 Brassica napus HOM05D003919 ORTHO05D004906 0.0e+00 1223.4 1087 56.8
BraA03t13766Z Brassica rapa HOM05D003919 ORTHO05D004906 0.0e+00 1223.0 1087 56.8
GSVIVG01012044001 Vitis vinifera HOM05D003919 ORTHO05D004906 0.0e+00 1208.0 1096 56.6
Carub.0006s2090 Capsella rubella HOM05D003919 ORTHO05D004906 0.0e+00 1204.9 1098 54.8
AT5G23110 Arabidopsis thaliana HOM05D003919 ORTHO05D004906 0.0e+00 1203.0 1092 55.1
AL6G34300 Arabidopsis lyrata HOM05D003919 ORTHO05D004906 0.0e+00 1198.3 1091 55.1
Ah.01g012290 Amaranthus hybridus HOM05D003919 ORTHO05D004906 0.0e+00 1198.0 1009 59.6
CiPaw.05G168800 Carya illinoinensis HOM05D003919 ORTHO05D004906 0.0e+00 1192.2 1100 56.7
Gohir.A12G133900 Gossypium hirsutum HOM05D003919 ORTHO05D004906 0.0e+00 1185.2 969 60.4
Cpa.g.sc0.152 Carica papaya HOM05D003919 ORTHO05D004906 0.0e+00 1153.7 966 60.9
ATR0618G139 Amborella trichopoda HOM05D003919 ORTHO05D004906 0.0e+00 1144.0 1110 53.3
Os04g0675200 Oryza sativa ssp. japonica HOM05D003919 ORTHO05D004906 0.0e+00 1105.5 1103 52.1
Zm00001eb066370 Zea mays HOM05D003919 ORTHO05D004906 0.0e+00 1095.1 1101 52.0
SEGI_31724 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 1.6e-311 1072.8 1121 49.2
HPP92_012877 Vanilla planifolia HOM05D003919 ORTHO05D004906 1.2e-254 884.0 961 49.8
CDE08G1346 Ceratophyllum demersum HOM05D003919 ORTHO05D004906 2.1e-251 873.2 1088 44.4
Mapoly0175s0011 Marchantia polymorpha HOM05D003919 ORTHO05D004906 9.3e-239 831.2 1130 40.3
AagrBONN_evm.TU.Sc2ySwM_344.4345 Anthoceros agrestis HOM05D003919 ORTHO05D004906 1.6e-238 830.5 1150 39.3
Pp3c9_15860 Physcomitrium patens HOM05D003919 ORTHO05D004906 2.1e-238 830.1 1131 40.3
Gohir.A12G134051 Gossypium hirsutum HOM05D003919 ORTHO05D004906 7.4e-228 795.0 1065 45.4
C07p44420 Brassica napus HOM05D003919 ORTHO05D004906 3.0e-197 693.3 1087 39.3
SMO164G0254 Selaginella moellendorffii HOM05D003919 ORTHO05D004906 1.3e-160 571.6 1105 32.7
GSVIVG01028587001 Vitis vinifera HOM05D003919 ORTHO05D004906 1.1e-95 355.9 332 57.8
Atru.chr11.1166 Acer truncatum HOM05D003919 ORTHO05D004906 6.3e-94 350.1 284 60.9
ECA233G4021 Erigeron canadensis HOM05D003919 ORTHO05D004906 7.4e-79 300.1 319 50.5
ECA233G4978 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.7e-73 281.6 265 53.2
ECA233G5805 Erigeron canadensis HOM05D003919 ORTHO05D004906 6.7e-72 276.9 269 51.3
ECA233G5658 Erigeron canadensis HOM05D003919 ORTHO05D004906 9.7e-71 273.1 230 56.1
ECA233G3594 Erigeron canadensis HOM05D003919 ORTHO05D004906 4.8e-70 270.8 230 57.0
HanXRQChr08g0218781 Helianthus annuus HOM05D003919 ORTHO05D004906 4.5e-68 264.2 228 57.0
HanXRQChr08g0218771 Helianthus annuus HOM05D003919 ORTHO05D004906 3.2e-66 258.1 231 54.5
MCO02G364 Micromonas commoda HOM05D003919 ORTHO05D004906 3.7e-54 218.0 1094 24.5
Nitab4.5_0003853g0040 Nicotiana tabacum HOM05D003919 ORTHO05D043505 1.0e-40 173.3 97 88.7
Cpa.g.sc0.154 Carica papaya HOM05D003919 ORTHO05D043505 1.6e-25 122.9 98 62.2
Cre01.g044850 Chlamydomonas reinhardtii HOM05D003919 ORTHO05D004906 4.0e-16 91.7 240 27.1
ECA233G0722 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.6e-15 87.4 69 53.6
Os04g0675101 Oryza sativa ssp. japonica HOM05D003919 ORTHO05D004906 3.0e-11 75.5 454 20.9
Peaxi162Scf00363g00329 Petunia axillaris HOM05D003919 ORTHO05D004906 4.3e-10 71.6 379 22.7
arahy.Tifrunner.gnm1.ann1.FE7SUA Arachis hypogaea HOM05D003919 ORTHO05D004906 1.1e-08 67.0 389 22.6
Ca_25292_v3 Cicer arietinum L. HOM05D003919 ORTHO05D004906 4.0e-08 65.1 457 23.2
Atru.chr11.1141 Acer truncatum HOM05D002456 ORTHO05D002994 1.5e-07 63.2 61 47.5
SEGI_11727 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 7.6e-07 60.8 220 24.5
SEGI_18724 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 7.6e-07 60.8 220 24.5
Ah.01g012280 Amaranthus hybridus HOM05D003919 ORTHO05D004906 4.9e-06 58.2 371 22.9


User provided reference genes

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