Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g014170.3 Solanum lycopersicum HOM05D003919 ORTHO05D004906 0.0e+00 1221.8 625 100.0
Sopen02g003520 Solanum pennellii HOM05D003919 ORTHO05D004906 0.0e+00 1173.3 604 99.3
Peaxi162Scf00363g00327 Petunia axillaris HOM05D003919 ORTHO05D004906 3.7e-298 1027.7 611 85.9
Nitab4.5_0003853g0030 Nicotiana tabacum HOM05D003919 ORTHO05D004906 8.0e-293 1010.0 593 87.0
Nitab4.5_0000405g0050 Nicotiana tabacum HOM05D003919 ORTHO05D004906 5.7e-291 1003.8 593 86.8
CSS0046709 Camellia sinensis var. sinensis HOM05D003919 ORTHO05D004906 1.9e-225 786.2 607 66.9
vmacro10894 Vaccinium macrocarpon HOM05D003919 ORTHO05D004906 1.2e-219 766.9 621 64.9
Cc11_g02410 Coffea canephora HOM05D003919 ORTHO05D004906 2.0e-219 766.1 604 65.2
Dinv11717 Davidia involucrata HOM05D003919 ORTHO05D004906 3.4e-219 765.4 605 65.3
MD16G1001800 Malus domestica HOM05D003919 ORTHO05D004906 1.4e-217 760.0 610 65.4
GSVIVG01012044001 Vitis vinifera HOM05D003919 ORTHO05D004906 7.2e-217 757.7 609 65.2
Prupe.1G347000 Prunus persica HOM05D003919 ORTHO05D004906 4.6e-216 755.0 630 62.5
Lj6A719G42 Lonicera japonica HOM05D003919 ORTHO05D004906 1.3e-215 753.4 597 65.7
RcHm_v2.0_Chr4g0446631 Rosa chinensis HOM05D003919 ORTHO05D004906 9.7e-214 747.3 631 62.4
FvH4_4g36870 Fragaria vesca HOM05D003919 ORTHO05D004906 1.3e-213 746.9 631 62.4
FAN12G0111 Fragaria x ananassa HOM05D003919 ORTHO05D004906 2.2e-213 746.1 623 63.2
TAR374G1487 Trochodendron aralioides HOM05D003919 ORTHO05D004906 8.2e-213 744.2 612 64.1
Sabra05G0077100 Salix brachista HOM05D003919 ORTHO05D004906 1.1e-212 743.8 612 62.9
Duzib132G0455 Durio zibethinus HOM05D003919 ORTHO05D004906 2.4e-212 742.7 607 62.6
Thecc.02G160300 Theobroma cacao HOM05D003919 ORTHO05D004906 2.4e-212 742.7 607 64.1
Rhsim09G0081500 Rhododendron simsii HOM05D003919 ORTHO05D004906 4.1e-212 741.9 603 64.7
FAN17G2968 Fragaria x ananassa HOM05D003919 ORTHO05D004906 9.1e-212 740.7 623 62.6
Actinidia04322 Actinidia chinensis HOM05D003919 ORTHO05D004906 2.6e-211 739.2 584 65.6
FAN07G2510 Fragaria x ananassa HOM05D003919 ORTHO05D004906 4.5e-211 738.4 629 62.0
Potri.005G093000 Populus trichocarpa HOM05D003919 ORTHO05D004906 6.5e-210 734.6 612 62.7
COL.COLO4_13755 Corchorus olitorius HOM05D003919 ORTHO05D004906 1.4e-209 733.4 604 63.6
DCAR_026901 Daucus carota HOM05D003919 ORTHO05D004906 2.7e-208 729.2 611 62.2
Migut.J01108 Erythranthe guttata HOM05D003919 ORTHO05D004906 2.7e-208 729.2 604 61.9
CiPaw.05G168800 Carya illinoinensis HOM05D003919 ORTHO05D004906 6.1e-208 728.0 608 62.3
Gohir.A12G133900 Gossypium hirsutum HOM05D003919 ORTHO05D004906 6.1e-208 728.0 607 61.8
QL03p046003 Quercus lobata HOM05D003919 ORTHO05D004906 6.1e-208 728.0 631 62.1
TWI53G0046 Tripterygium wilfordii HOM05D003919 ORTHO05D004906 1.8e-207 726.5 606 63.0
Gorai.008G149000 Gossypium raimondii HOM05D003919 ORTHO05D004906 2.3e-207 726.1 607 61.4
Gohir.D12G137500 Gossypium hirsutum HOM05D003919 ORTHO05D004906 4.4e-206 721.8 607 61.1
Manes.04G066100 Manihot esculenta HOM05D003919 ORTHO05D004906 4.4e-206 721.8 608 62.5
HanXRQChr12g0366421 Helianthus annuus HOM05D003919 ORTHO05D004906 9.7e-206 720.7 610 62.5
Cfa008737 Carpinus fangiana HOM05D003919 ORTHO05D004906 3.7e-205 718.8 628 61.0
ClCG09G004560 Citrullus lanatus HOM05D003919 ORTHO05D004906 3.1e-204 715.7 614 60.7
Haze_11754 Corylus avellana HOM05D003919 ORTHO05D004906 2.6e-203 712.6 651 59.3
Cpa.g.sc0.150 Carica papaya HOM05D003919 ORTHO05D004906 5.0e-202 708.4 603 61.2
Ciclev10030469m.g Citrus clementina HOM05D003919 ORTHO05D004906 1.1e-201 707.2 630 59.7
Lsat_1_v5_gn_8_31660 Lactuca sativa HOM05D003919 ORTHO05D004906 1.1e-201 707.2 609 61.2
MELO3C023597.2 Cucumis melo HOM05D003919 ORTHO05D004906 8.8e-199 697.6 629 58.3
Aqoxy3G04259 Aquilegia oxysepala HOM05D003919 ORTHO05D004906 2.0e-198 696.4 607 60.6
Eucgr.J00863 Eucalyptus grandis HOM05D003919 ORTHO05D004906 2.6e-198 696.0 607 59.8
ECA233G1217 Erigeron canadensis HOM05D003919 ORTHO05D004906 3.3e-198 695.7 612 60.3
THA.LOC104819381 Tarenaya hassleriana HOM05D003919 ORTHO05D004906 7.4e-198 694.5 630 58.3
CsaV3_7G030590 Cucumis sativus L. HOM05D003919 ORTHO05D004906 1.3e-197 693.7 629 58.0
Glyma.09G282200 Glycine max HOM05D003919 ORTHO05D004906 2.2e-197 693.0 607 60.1
Sed0027848 Sechium edule HOM05D003919 ORTHO05D004906 2.4e-196 689.5 632 57.9
Dinv01184 Davidia involucrata HOM05D003919 ORTHO05D004906 1.0e-194 684.1 560 63.8
PSO782G3793 Papaver somniferum HOM05D003919 ORTHO05D004906 1.0e-194 684.1 604 58.3
Lalb_Chr04g0258931 Lupinus albus HOM05D003919 ORTHO05D004906 2.5e-193 679.5 630 57.0
Lj2g0026278 Lotus japonicus HOM05D003919 ORTHO05D004906 3.2e-193 679.1 612 59.0
Glyma.20G003400 Glycine max HOM05D003919 ORTHO05D004906 5.5e-193 678.3 630 57.9
Nn4g24949 Nelumbo nucifera HOM05D003919 ORTHO05D004906 5.5e-193 678.3 631 58.3
Phvul.003G005926 Phaseolus vulgaris HOM05D003919 ORTHO05D004906 5.5e-193 678.3 633 57.3
AUR62017695 Chenopodium quinoa HOM05D003919 ORTHO05D004906 8.0e-192 674.5 629 56.6
TPR.G8246 Trifolium pratense HOM05D003919 ORTHO05D004906 8.0e-192 674.5 611 58.4
Ca_30179_v3 Cicer arietinum L. HOM05D003919 ORTHO05D004906 1.0e-191 674.1 610 59.3
Psat6g099280 Pisum sativum HOM05D003919 ORTHO05D004906 2.3e-191 672.9 611 59.2
EL10Ac9g22945 Beta vulgaris HOM05D003919 ORTHO05D004906 4.0e-191 672.2 630 55.9
AUR62015231 Chenopodium quinoa HOM05D003919 ORTHO05D004906 5.2e-191 671.8 630 56.3
Sp2g24010 Schrenkiella parvula HOM05D003919 ORTHO05D004906 8.8e-191 671.0 603 57.4
PGR044G0490 Punica granatum HOM05D003919 ORTHO05D004906 3.3e-190 669.1 610 58.4
Thhalv10003499m.g Eutrema salsugineum HOM05D003919 ORTHO05D004906 7.5e-190 667.9 630 54.9
Aa31LG11G2600 Aethionema arabicum HOM05D003919 ORTHO05D004906 1.3e-189 667.2 610 56.2
Ah.01g012290 Amaranthus hybridus HOM05D003919 ORTHO05D004906 2.2e-189 666.4 619 56.1
C07p44420 Brassica napus HOM05D003919 ORTHO05D004906 4.8e-189 665.2 602 56.1
Medtr1g037310 Medicago truncatula HOM05D003919 ORTHO05D004906 1.4e-188 663.7 610 57.7
BolC7t44964H Brassica oleracea HOM05D003919 ORTHO05D004906 1.6e-187 660.2 618 54.9
A03p46400 Brassica napus HOM05D003919 ORTHO05D004906 3.5e-187 659.1 602 56.1
AT5G23110 Arabidopsis thaliana HOM05D003919 ORTHO05D004906 7.7e-187 657.9 602 55.6
BraA03t13766Z Brassica rapa HOM05D003919 ORTHO05D004906 1.7e-186 656.8 613 55.6
Carub.0006s2090 Capsella rubella HOM05D003919 ORTHO05D004906 9.4e-185 651.0 602 55.5
AL6G34300 Arabidopsis lyrata HOM05D003919 ORTHO05D004906 2.1e-184 649.8 602 55.3
CARHR190420 Cardamine hirsuta HOM05D003919 ORTHO05D004906 6.1e-184 648.3 602 55.6
ATR0618G139 Amborella trichopoda HOM05D003919 ORTHO05D004906 1.9e-177 626.7 610 54.3
Gohir.A12G134051 Gossypium hirsutum HOM05D003919 ORTHO05D004906 1.2e-171 607.4 559 57.1
CDE08G1346 Ceratophyllum demersum HOM05D003919 ORTHO05D004906 4.7e-168 595.5 601 52.7
ECA233G4021 Erigeron canadensis HOM05D003919 ORTHO05D004906 1.3e-165 587.4 604 51.5
Zm00001eb066370 Zea mays HOM05D003919 ORTHO05D004906 4.1e-164 582.4 607 50.9
ECA233G3594 Erigeron canadensis HOM05D003919 ORTHO05D004906 1.5e-153 547.4 652 46.8
HPP92_012877 Vanilla planifolia HOM05D003919 ORTHO05D004906 4.0e-151 539.3 608 47.9
Hund24370 Selenicereus undatus HOM05D003919 ORTHO05D004906 8.6e-146 521.5 476 56.3
Mapoly0175s0011 Marchantia polymorpha HOM05D003919 ORTHO05D004906 7.3e-137 491.9 630 44.6
ECA233G5658 Erigeron canadensis HOM05D003919 ORTHO05D004906 3.6e-136 489.6 537 50.3
SEGI_28603 Sequoiadendron giganteum HOM05D003919 ORTHO05D004906 1.0e-130 471.5 553 47.6
Pp3c9_15860 Physcomitrium patens HOM05D003919 ORTHO05D004906 5.6e-129 465.7 624 42.3
AagrBONN_evm.TU.Sc2ySwM_344.4345 Anthoceros agrestis HOM05D003919 ORTHO05D004906 2.9e-125 453.4 599 42.7
HanXRQChr08g0218781 Helianthus annuus HOM05D003919 ORTHO05D004906 1.6e-120 437.6 445 52.4
ECA233G0722 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.2e-116 422.9 506 46.8
SMO164G0254 Selaginella moellendorffii HOM05D003919 ORTHO05D004906 9.3e-116 421.8 613 39.3
HanXRQChr08g0218771 Helianthus annuus HOM05D003919 ORTHO05D004906 3.5e-115 419.9 449 51.0
TAR374G0021 Trochodendron aralioides HOM05D003919 ORTHO05D004906 1.5e-113 414.5 396 59.6
SGA_v2.0_scaffold2647G54168 Striga asiatica HOM05D003919 ORTHO05D004906 1.4e-108 397.9 402 52.5
Os04g0675300 Oryza sativa ssp. japonica HOM05D003919 ORTHO05D004906 2.4e-79 300.8 302 55.3
Atru.chr11.1141 Acer truncatum HOM05D002456 ORTHO05D002994 1.3e-72 278.5 492 39.0
Sc06g0007940 Simmondsia chinensis HOM05D003919 ORTHO05D004906 8.3e-56 222.6 172 62.8
ECA233G0256 Erigeron canadensis HOM05D000006 ORTHO05D000091 7.0e-55 219.5 247 51.0
ECA233G4978 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.2e-40 171.4 179 48.6
AUR62015233 Chenopodium quinoa HOM05D003919 ORTHO05D004906 7.8e-38 162.9 105 74.3
Cre01.g044850 Chlamydomonas reinhardtii HOM05D003919 ORTHO05D004906 1.5e-36 158.7 759 24.8
MELO3C004964.2 Cucumis melo HOM05D003919 ORTHO05D004906 2.3e-21 108.2 67 71.6
Os04g0675200 Oryza sativa ssp. japonica HOM05D003919 ORTHO05D004906 6.0e-14 83.6 60 65.0
CBR_g9107 Chara braunii HOM05D003919 ORTHO05D002545 1.6e-06 58.9 66 45.5
Cre02.g110000 Chlamydomonas reinhardtii HOM05D038381 ORTHO05D034550 4.6e-06 57.4 50 46.0


User provided reference genes

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