Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g011720.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 1.9e-62 242.3 120 100.0
CAN.G1431.3 Capsicum annuum HOM05D001750 ORTHO05D001825 4.4e-30 134.8 197 44.7
CAN.G134.7 Capsicum annuum HOM05D001750 ORTHO05D001825 7.4e-30 134.0 197 44.2
CAN.G413.7 Capsicum annuum HOM05D001750 ORTHO05D001825 7.4e-30 134.0 197 44.2
DCAR_032533 Daucus carota HOM05D001750 ORTHO05D001825 1.7e-29 132.9 197 43.7
CAN.G1045.16 Capsicum annuum HOM05D001750 ORTHO05D001825 4.1e-28 128.3 197 41.6
HanXRQChr02g0059681 Helianthus annuus HOM05D001750 ORTHO05D001825 7.0e-28 127.5 197 42.6
HanXRQChr05g0152401 Helianthus annuus HOM05D001750 ORTHO05D001825 7.0e-28 127.5 197 42.6
HanXRQChr06g0182971 Helianthus annuus HOM05D001750 ORTHO05D001825 7.0e-28 127.5 197 42.6
HanXRQChr09g0258551 Helianthus annuus HOM05D001750 ORTHO05D001825 7.0e-28 127.5 197 42.6
HanXRQChr11g0323711 Helianthus annuus HOM05D001750 ORTHO05D001825 7.0e-28 127.5 197 42.6
HanXRQCPg0580391 Helianthus annuus HOM05D001750 ORTHO05D001825 7.0e-28 127.5 197 42.6
FvH4_c3g00021 Fragaria vesca HOM05D001750 ORTHO05D001825 1.6e-27 126.3 197 42.1
RcHm_v2.0_CPg0502851 Rosa chinensis HOM05D001750 ORTHO05D001825 2.6e-27 125.6 197 42.1
Lj2P1238T72 Lonicera japonica HOM05D001750 ORTHO05D001825 5.9e-27 124.4 197 41.6
Nn064s42216 Nelumbo nucifera HOM05D001750 ORTHO05D001825 1.0e-26 123.6 197 41.6
SalBow1G5472 Salvia bowleyana HOM05D001750 ORTHO05D001825 2.9e-26 122.1 197 40.6
BolSC29t60501H Brassica oleracea HOM05D001750 ORTHO05D001825 5.0e-26 121.3 197 39.1
BolSC37t60789H Brassica oleracea HOM05D001750 ORTHO05D001825 5.0e-26 121.3 197 39.1
BolSC44t60818H Brassica oleracea HOM05D001750 ORTHO05D001825 5.0e-26 121.3 197 39.1
BolSC45t60914H Brassica oleracea HOM05D001750 ORTHO05D001825 5.0e-26 121.3 197 39.1
BolSC46t60963H Brassica oleracea HOM05D001750 ORTHO05D001825 5.0e-26 121.3 197 39.1
BraSC103t45424Z Brassica rapa HOM05D001750 ORTHO05D001825 5.0e-26 121.3 197 39.1
BraSC138t45539Z Brassica rapa HOM05D001750 ORTHO05D001825 5.0e-26 121.3 197 39.1
BraSC143t45665Z Brassica rapa HOM05D001750 ORTHO05D001825 5.0e-26 121.3 197 39.1
BraSC25t45905Z Brassica rapa HOM05D001750 ORTHO05D001825 5.0e-26 121.3 197 39.1
BraSC59t46546Z Brassica rapa HOM05D001750 ORTHO05D001825 5.0e-26 121.3 197 39.1
PGR111G0046 Punica granatum HOM05D001750 ORTHO05D001825 5.0e-26 121.3 197 39.6
AL7G50350 Arabidopsis lyrata HOM05D001750 ORTHO05D001825 1.5e-25 119.8 197 38.6
ATCG01010 Arabidopsis thaliana HOM05D001750 ORTHO05D001825 2.5e-25 119.0 197 38.1
EL10As15g24136 Beta vulgaris HOM05D001750 ORTHO05D001825 4.2e-25 118.2 197 40.1
CAN.G1526.5 Capsicum annuum HOM05D001750 ORTHO05D001825 9.4e-25 117.1 100 64.0
Medtr4g006150 Medicago truncatula HOM05D001750 ORTHO05D001825 1.2e-24 116.7 197 38.1
Medtr4g051300 Medicago truncatula HOM05D001750 ORTHO05D001825 1.2e-24 116.7 197 38.1
Medtr7g021740 Medicago truncatula HOM05D001750 ORTHO05D001825 1.2e-24 116.7 197 38.1
MELO3C027417.2 Cucumis melo HOM05D001750 ORTHO05D001825 1.6e-24 116.3 197 39.1
HanXRQChr08g0212841 Helianthus annuus HOM05D001750 ORTHO05D001825 4.7e-24 114.8 180 42.8
LjContig00318g0010147 Lotus japonicus HOM05D001750 ORTHO05D001825 8.0e-24 114.0 197 38.1
LjContig00319g0009462 Lotus japonicus HOM05D001750 ORTHO05D001825 8.0e-24 114.0 197 38.1
Hma1.2p1_0472F.1_g159730 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 1.0e-23 113.6 100 62.0
PSO548G0117 Papaver somniferum HOM05D001750 ORTHO05D001825 1.0e-23 113.6 100 62.0
Hma1.2p1_0066F.1_g036370 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 1.8e-23 112.8 77 75.3
Gohir.1Z049581 Gossypium hirsutum HOM05D001750 ORTHO05D001825 6.7e-23 110.9 100 61.0
Gohir.A02G134105 Gossypium hirsutum HOM05D001750 ORTHO05D001825 6.7e-23 110.9 100 61.0
Gohir.A04G039180 Gossypium hirsutum HOM05D001750 ORTHO05D001825 6.7e-23 110.9 100 61.0
Gohir.A12G229700 Gossypium hirsutum HOM05D001750 ORTHO05D001825 6.7e-23 110.9 100 61.0
Sed0000095 Sechium edule HOM05D001750 ORTHO05D001825 6.7e-23 110.9 100 61.0
Lalb_Chr03g0039401 Lupinus albus HOM05D001750 ORTHO05D001825 2.0e-22 109.4 100 59.0
Gohir.A04G039195 Gossypium hirsutum HOM05D001750 ORTHO05D001825 3.3e-22 108.6 100 60.0
Psat0s3763g0040 Pisum sativum HOM05D001750 ORTHO05D001825 3.3e-22 108.6 77 71.4
Potri.001G342933 Populus trichocarpa HOM05D001750 ORTHO05D001825 7.5e-22 107.5 77 70.1
arahy.Tifrunner.gnm1.ann1.B6WU7N Arachis hypogaea HOM05D001750 ORTHO05D001825 6.3e-21 104.4 107 56.1
Gohir.1Z049579 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.1e-20 103.6 96 60.4
arahy.Tifrunner.gnm1.ann1.5P7K6N Arachis hypogaea HOM05D001750 ORTHO05D001825 1.4e-20 103.2 107 55.1
EL10As28g24255 Beta vulgaris HOM05D001750 ORTHO05D001825 2.4e-20 102.4 77 68.8
Gorai.005G127100 Gossypium raimondii HOM05D001750 ORTHO05D001825 5.9e-19 97.8 77 68.8
Solyc01g017090.2 Solanum lycopersicum HOM05D001750 ORTHO05D001825 1.0e-18 97.1 76 64.5
PGSC0003DMG400029008 Solanum tuberosum HOM05D001750 ORTHO05D001825 3.8e-18 95.1 62 79.0
Lalb_Chr07g0191701 Lupinus albus HOM05D001750 ORTHO05D001825 2.5e-17 92.4 62 75.8
Gohir.1Z049402 Gossypium hirsutum HOM05D001750 ORTHO05D001825 3.2e-17 92.0 62 75.8
Oeu010691.1 Olea europaea HOM05D001750 ORTHO05D001825 7.2e-17 90.9 62 74.2
Nitab4.5_0007104g0110 Nicotiana tabacum HOM05D001750 ORTHO05D001825 2.7e-16 89.0 67 70.1
Potri.011G084150 Populus trichocarpa HOM05D001750 ORTHO05D001825 4.7e-16 88.2 62 69.4
HanXRQChr00c0289g0573101 Helianthus annuus HOM05D001750 ORTHO05D001825 1.0e-15 87.0 173 35.3
Manes.18G138200 Manihot esculenta HOM05D001750 ORTHO05D001825 1.8e-15 86.3 148 39.2
Solyc11g021190.2 Solanum lycopersicum HOM05D001750 ORTHO05D001825 2.3e-15 85.9 58 75.9
Eucgr.B00850 Eucalyptus grandis HOM05D001750 ORTHO05D001825 5.2e-15 84.7 147 40.8
Thhalv10024000m.g Eutrema salsugineum HOM05D001750 ORTHO05D001825 2.0e-14 82.8 77 58.4
Gorai.008G266700 Gossypium raimondii HOM05D001750 ORTHO05D001825 2.0e-14 82.8 52 78.8
Gohir.D02G151844 Gossypium hirsutum HOM05D001750 ORTHO05D001825 2.6e-14 82.4 120 40.0
PGSC0003DMG400020529 Solanum tuberosum HOM05D000729 ORTHO05D001063 4.8e-13 78.2 163 36.2
Psat0s8829g0080 Pisum sativum HOM05D001750 ORTHO05D001825 8.3e-13 77.4 120 40.0
Gorai.005G170400 Gossypium raimondii HOM05D001750 ORTHO05D001825 1.1e-12 77.0 120 38.3
Gorai.013G022800 Gossypium raimondii HOM05D001750 ORTHO05D001825 1.4e-12 76.6 82 53.7
HanXRQChr01g0020101 Helianthus annuus HOM05D001750 ORTHO05D001825 5.4e-12 74.7 100 48.0
Migut.D01382 Erythranthe guttata HOM05D001750 ORTHO05D001825 7.0e-12 74.3 121 40.5
Psat5g142840 Pisum sativum HOM05D001750 ORTHO05D001825 3.5e-11 72.0 42 81.0
ATMG00513 Arabidopsis thaliana HOM05D001750 ORTHO05D001825 1.7e-10 69.7 73 52.1
EL10As4g23402 Beta vulgaris HOM05D001750 ORTHO05D001825 1.7e-10 69.7 42 78.6
BolC6t36205H Brassica oleracea HOM05D001750 ORTHO05D001825 1.7e-10 69.7 42 78.6
FvH4_c1g00470 Fragaria vesca HOM05D001750 ORTHO05D001825 2.9e-10 68.9 73 52.1
Phvul.005G088400 Phaseolus vulgaris HOM05D001750 ORTHO05D001825 2.9e-10 68.9 73 52.1
TPR.G28320 Trifolium pratense HOM05D001750 ORTHO05D001825 2.9e-10 68.9 73 52.1
VMungo0329G0001 Vigna mungo HOM05D001750 ORTHO05D001825 2.9e-10 68.9 73 52.1
BolSC28t60420H Brassica oleracea HOM05D001750 ORTHO05D001825 3.8e-10 68.6 73 52.1
BraSC48t46283Z Brassica rapa HOM05D001750 ORTHO05D001825 3.8e-10 68.6 73 52.1
BraSC77t46633Z Brassica rapa HOM05D001750 ORTHO05D001825 3.8e-10 68.6 73 52.1
Cpa.g.sc900.3 Carica papaya HOM05D001750 ORTHO05D001825 3.8e-10 68.6 73 52.1
Lalb_Chr17g0337371 Lupinus albus HOM05D001750 ORTHO05D001825 3.8e-10 68.6 73 52.1
Sp3g25940 Schrenkiella parvula HOM05D001750 ORTHO05D001825 3.8e-10 68.6 73 52.1
Zm00001eb384430 Zea mays HOM05D001750 ORTHO05D001825 3.8e-10 68.6 75 49.3
Zm00001eb384490 Zea mays HOM05D001750 ORTHO05D001825 3.8e-10 68.6 75 49.3
Zm00001eb384540 Zea mays HOM05D001750 ORTHO05D001825 3.8e-10 68.6 75 49.3
Zm00001eb437920 Zea mays HOM05D001750 ORTHO05D001825 3.8e-10 68.6 75 49.3
Zm00001eb438010 Zea mays HOM05D001750 ORTHO05D001825 3.8e-10 68.6 75 49.3
Zm00001eb439010 Zea mays HOM05D001750 ORTHO05D001825 3.8e-10 68.6 75 49.3
Zm00001eb440820 Zea mays HOM05D001750 ORTHO05D001825 3.8e-10 68.6 75 49.3
Zm00001eb442540 Zea mays HOM05D001750 ORTHO05D001825 3.8e-10 68.6 75 49.3
FvH4_6g34420 Fragaria vesca HOM05D001750 ORTHO05D001825 5.0e-10 68.2 110 39.1
Aa31sc483G10 Aethionema arabicum HOM05D001750 ORTHO05D001825 6.6e-10 67.8 110 39.1
Ciclev10013962m.g Citrus clementina HOM05D001750 ORTHO05D001825 8.6e-10 67.4 42 76.2
Ciclev10013986m.g Citrus clementina HOM05D001750 ORTHO05D001825 8.6e-10 67.4 42 76.2
Ciclev10014000m.g Citrus clementina HOM05D001750 ORTHO05D001825 8.6e-10 67.4 42 76.2
Ciclev10018422m.g Citrus clementina HOM05D001750 ORTHO05D001825 8.6e-10 67.4 42 76.2
Ciclev10027639m.g Citrus clementina HOM05D001750 ORTHO05D001825 8.6e-10 67.4 42 76.2
Ciclev10027648m.g Citrus clementina HOM05D001750 ORTHO05D001825 8.6e-10 67.4 42 76.2
Ciclev10030454m.g Citrus clementina HOM05D001750 ORTHO05D001825 8.6e-10 67.4 42 76.2
Solyc00g500169.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 8.6e-10 67.4 75 50.7
SHI48909 Sapria himalayana HOM05D001750 ORTHO05D001825 1.1e-09 67.0 73 53.4
Nitab4.5_0001788g0200 Nicotiana tabacum HOM05D001750 ORTHO05D001825 1.5e-09 66.6 75 50.7
Nitab4.5_0007400g0030 Nicotiana tabacum HOM05D001750 ORTHO05D001825 2.5e-09 65.9 123 39.0
HanXRQMTg0579361 Helianthus annuus HOM05D001750 ORTHO05D001825 4.2e-09 65.1 75 49.3
FAN14G4205 Fragaria x ananassa HOM05D001750 ORTHO05D001825 5.5e-09 64.7 71 50.7
MBI06_g25391_MAGBIO Magnolia biondii HOM05D001750 ORTHO05D001825 9.5e-09 63.9 73 49.3
Nn117s43413 Nelumbo nucifera HOM05D001750 ORTHO05D001825 9.5e-09 63.9 73 49.3
Nn117s43418 Nelumbo nucifera HOM05D001750 ORTHO05D001825 9.5e-09 63.9 73 49.3
Nn1g10108 Nelumbo nucifera HOM05D001750 ORTHO05D001825 9.5e-09 63.9 73 49.3
Nn1g10189 Nelumbo nucifera HOM05D001750 ORTHO05D001825 9.5e-09 63.9 73 49.3
Nn1g10194 Nelumbo nucifera HOM05D001750 ORTHO05D001825 9.5e-09 63.9 73 49.3
Peaxi162Scf00451g00046 Petunia axillaris HOM05D001750 ORTHO05D001825 2.1e-08 62.8 60 56.7
Solyc00g500098.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 2.1e-08 62.8 60 56.7
Solyc00g500271.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 2.1e-08 62.8 60 56.7
Solyc00g500317.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 2.1e-08 62.8 60 56.7
Nitab4.5_0000172g0080 Nicotiana tabacum HOM05D001750 ORTHO05D001825 3.6e-08 62.0 60 56.7
SMO086G0048 Selaginella moellendorffii HOM05D001750 ORTHO05D001825 3.6e-08 62.0 76 47.4
Solyc02g032320.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 3.6e-08 62.0 67 50.7
TPR.G28398 Trifolium pratense HOM05D001750 ORTHO05D001825 3.6e-08 62.0 42 73.8
Lalb_Chr16g0388561 Lupinus albus HOM05D001750 ORTHO05D001825 8.0e-08 60.8 101 42.6
Nitab4.5_0000593g0200 Nicotiana tabacum HOM05D001750 ORTHO05D001825 8.0e-08 60.8 60 55.0
Gorai.001G163400 Gossypium raimondii HOM05D001750 ORTHO05D001825 1.0e-07 60.5 58 56.9
Lj2C1233T24 Lonicera japonica HOM05D001750 ORTHO05D001825 1.0e-07 60.5 60 55.0
Psat0s6638g0080 Pisum sativum HOM05D001750 ORTHO05D001825 1.0e-07 60.5 34 82.4
Psat4g065280 Pisum sativum HOM05D001750 ORTHO05D001825 1.0e-07 60.5 34 82.4
PSO017G5352 Papaver somniferum HOM05D001750 ORTHO05D001825 1.4e-07 60.1 73 46.6
unitig_87.g28030 Utricularia gibba HOM05D001750 ORTHO05D001825 3.0e-07 58.9 60 53.3
arahy.Tifrunner.gnm1.ann1.SXA5PB Arachis hypogaea HOM05D000445 ORTHO05D000314 4.0e-07 58.5 69 50.7
Lalb_Chr02g0153701 Lupinus albus HOM05D001750 ORTHO05D001825 4.0e-07 58.5 60 53.3
Thhalv10023164m.g Eutrema salsugineum HOM05D001750 ORTHO05D001825 5.2e-07 58.2 34 79.4
GSVIVG01004972001 Vitis vinifera HOM05D001750 ORTHO05D001825 6.8e-07 57.8 38 71.1
Gorai.002G182500 Gossypium raimondii HOM05D001750 ORTHO05D001825 8.9e-07 57.4 34 76.5
Nitab4.5_0000172g1800 Nicotiana tabacum HOM05D001750 ORTHO05D001825 2.6e-06 55.8 60 53.3
Nitab4.5_0007104g0040 Nicotiana tabacum HOM05D000216 ORTHO05D001131 2.6e-06 55.8 42 59.5
SEGI_05810 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 3.4e-06 55.5 75 45.3
HanXRQChr00c0328g0573591 Helianthus annuus HOM05D001750 ORTHO05D001825 5.7e-06 54.7 40 60.0
SEGI_04456 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 9.8e-06 53.9 75 44.0


User provided reference genes

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