Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g110640.2 Solanum lycopersicum HOM05D004017 ORTHO05D013629 4.9e-105 384.4 185 100.0
CAN.G1238.14 Capsicum annuum HOM05D004017 ORTHO05D004612 1.5e-45 186.8 149 65.8
Sopen02g027400 Solanum pennellii HOM05D004017 ORTHO05D004612 1.5e-45 186.8 146 67.1
Solyc02g082660.3 Solanum lycopersicum HOM05D004017 ORTHO05D004612 4.3e-45 185.3 148 67.6
Nitab4.5_0001467g0030 Nicotiana tabacum HOM05D004017 ORTHO05D004612 6.9e-43 177.9 157 59.2
Peaxi162Scf00121g02447 Petunia axillaris HOM05D004017 ORTHO05D004612 9.7e-37 157.5 144 59.7
Sopen01g052810 Solanum pennellii HOM05D004017 ORTHO05D004612 5.9e-34 148.3 79 92.4
Sopen02g027370 Solanum pennellii HOM05D004017 ORTHO05D004612 5.7e-21 105.1 87 65.5
Sopen01g045030 Solanum pennellii HOM05D004017 ORTHO05D004612 1.3e-20 104.0 105 54.3
PGSC0003DMG400023779 Solanum tuberosum HOM05D011612 ORTHO05D013629 2.4e-19 99.8 67 74.6
Nitab4.5_0004608g0010 Nicotiana tabacum HOM05D004017 ORTHO05D004612 1.3e-17 94.0 66 68.2
PGSC0003DMG400001475 Solanum tuberosum HOM05D011612 ORTHO05D013629 1.3e-17 94.0 54 81.5
Dinv28321 Davidia involucrata HOM05D004017 ORTHO05D004612 1.9e-16 90.1 146 38.4
Nitab4.5_0004608g0030 Nicotiana tabacum HOM05D004017 ORTHO05D004612 2.5e-16 89.7 69 62.3
GSVIVG01026635001 Vitis vinifera HOM05D004017 ORTHO05D004612 4.2e-16 89.0 155 38.1
CiPaw.07G002300 Carya illinoinensis HOM05D004017 ORTHO05D004612 2.1e-15 86.7 138 39.9
Solyc01g102630.4 Solanum lycopersicum HOM05D004017 ORTHO05D004612 6.1e-15 85.1 106 49.1
TWI09G1144 Tripterygium wilfordii HOM05D004017 ORTHO05D004612 8.0e-15 84.7 101 42.6
PGSC0003DMG400025169 Solanum tuberosum HOM05D011612 ORTHO05D013629 1.0e-14 84.3 54 74.1
Sopen02g028880 Solanum pennellii HOM05D010460 ORTHO05D037645 5.2e-14 82.0 53 69.8
Manes.02G114300 Manihot esculenta HOM05D004017 ORTHO05D004612 1.2e-13 80.9 112 42.0
Glyma.01G158400 Glycine max HOM05D004017 ORTHO05D004612 2.6e-13 79.7 91 45.1
Atru.chr3.129 Acer truncatum HOM05D004017 ORTHO05D004612 5.7e-13 78.6 105 41.0
vmacro20628 Vaccinium macrocarpon HOM05D004017 ORTHO05D004612 5.7e-13 78.6 70 54.3
Actinidia22894 Actinidia chinensis HOM05D004017 ORTHO05D004612 9.8e-13 77.8 85 51.8
Rhsim10G0195200 Rhododendron simsii HOM05D004017 ORTHO05D004612 9.8e-13 77.8 58 65.5
CSS0016202 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 1.3e-12 77.4 69 56.5
CSS0016684 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 1.3e-12 77.4 69 56.5
CSS0024207 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 1.3e-12 77.4 69 56.5
CSS0032900 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 1.3e-12 77.4 69 56.5
CSS0018094 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 1.7e-12 77.0 69 56.5
Medtr5g024250 Medicago truncatula HOM05D004017 ORTHO05D004612 2.8e-12 76.3 93 41.9
CsaV3_3G000200 Cucumis sativus L. HOM05D004017 ORTHO05D004612 3.7e-12 75.9 130 35.4
CSS0017200 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 4.8e-12 75.5 69 55.1
MELO3C013715.2 Cucumis melo HOM05D004017 ORTHO05D004612 6.3e-12 75.1 117 34.2
Phvul.002G116900 Phaseolus vulgaris HOM05D004017 ORTHO05D004612 8.3e-12 74.7 93 46.2
Cc07_g11910 Coffea canephora HOM05D004017 ORTHO05D004612 1.4e-11 73.9 152 34.9
Hma1.2p1_0300F.1_g117960 Hydrangea macrophylla HOM05D004017 ORTHO05D004612 1.4e-11 73.9 147 35.4
QL06p053019 Quercus lobata HOM05D004017 ORTHO05D004612 1.4e-11 73.9 84 45.2
CSS0016280 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 2.4e-11 73.2 69 55.1
Eucgr.J02538 Eucalyptus grandis HOM05D004017 ORTHO05D004612 2.4e-11 73.2 94 42.6
Ciclev10024702m.g Citrus clementina HOM05D004017 ORTHO05D004612 3.1e-11 72.8 72 48.6
Lj2g0020546 Lotus japonicus HOM05D004017 ORTHO05D004612 3.1e-11 72.8 91 42.9
Nn6g31689 Nelumbo nucifera HOM05D004017 ORTHO05D004612 3.1e-11 72.8 153 31.4
Potri.005G101900 Populus trichocarpa HOM05D004017 ORTHO05D004612 4.1e-11 72.4 92 42.4
CSS0002700 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 5.4e-11 72.0 66 54.5
Ca_24985_v3 Cicer arietinum L. HOM05D004017 ORTHO05D004612 5.4e-11 72.0 91 42.9
TPR.G33889 Trifolium pratense HOM05D004017 ORTHO05D004612 5.4e-11 72.0 97 41.2
Sabra05G0084300 Salix brachista HOM05D004017 ORTHO05D004612 7.0e-11 71.6 92 42.4
Sopen02g033710 Solanum pennellii HOM05D004017 ORTHO05D004612 9.1e-11 71.2 55 65.5
arahy.Tifrunner.gnm1.ann1.IMTK78 Arachis hypogaea HOM05D004017 ORTHO05D004612 1.2e-10 70.9 142 31.7
CANSAT25G1082 Cannabis sativa HOM05D004017 ORTHO05D004612 1.6e-10 70.5 122 36.9
MD02G1114700 Malus domestica HOM05D004017 ORTHO05D004612 1.6e-10 70.5 87 43.7
Lalb_Chr16g0380061 Lupinus albus HOM05D004017 ORTHO05D004612 2.7e-10 69.7 86 43.0
PGSC0003DMG401018040 Solanum tuberosum HOM05D004017 ORTHO05D004612 5.9e-10 68.6 61 59.0
THA.LOC104819715 Tarenaya hassleriana HOM05D004017 ORTHO05D004612 5.9e-10 68.6 78 48.7
Prupe.7G183500 Prunus persica HOM05D004017 ORTHO05D004612 1.0e-09 67.8 115 34.8
Lj2A500T36 Lonicera japonica HOM05D004017 ORTHO05D004612 1.3e-09 67.4 130 34.6
TAR628G0231 Trochodendron aralioides HOM05D004017 ORTHO05D004612 1.3e-09 67.4 62 51.6
Solyc01g150172.1 Solanum lycopersicum HOM05D011612 ORTHO05D013629 2.3e-09 66.6 44 65.9
DCAR_016694 Daucus carota HOM05D004017 ORTHO05D004612 2.9e-09 66.2 160 31.9
Sed0025898 Sechium edule HOM05D004017 ORTHO05D004612 2.9e-09 66.2 90 41.1
Sopen01g052770 Solanum pennellii HOM05D011612 ORTHO05D013629 2.9e-09 66.2 45 64.4
Duzib147G1448 Durio zibethinus HOM05D004017 ORTHO05D004612 5.0e-09 65.5 72 47.2
Psat2g148040 Pisum sativum HOM05D004017 ORTHO05D004612 5.0e-09 65.5 91 38.5
Sopen02g033750 Solanum pennellii HOM05D004017 ORTHO05D004612 5.0e-09 65.5 51 64.7
VMungo1215G1547 Vigna mungo HOM05D004017 ORTHO05D004612 6.5e-09 65.1 100 40.0
ECA238G2486 Erigeron canadensis HOM05D004017 ORTHO05D004612 8.6e-09 64.7 91 38.5
Oeu045735.2 Olea europaea HOM05D004017 ORTHO05D004612 1.1e-08 64.3 60 53.3
Thecc.01G005000 Theobroma cacao HOM05D004017 ORTHO05D004612 1.5e-08 63.9 72 48.6
FAN26G0543 Fragaria x ananassa HOM05D004017 ORTHO05D004612 2.5e-08 63.2 87 39.1
AT4G35520 Arabidopsis thaliana HOM05D004017 ORTHO05D004612 3.2e-08 62.8 121 36.4
Sp7g33300 Schrenkiella parvula HOM05D004017 ORTHO05D004612 3.2e-08 62.8 120 38.3
FvH4_1g10270 Fragaria vesca HOM05D004017 ORTHO05D004612 7.2e-08 61.6 53 50.9
FAN19G1215 Fragaria x ananassa HOM05D004017 ORTHO05D004612 7.2e-08 61.6 53 50.9
PGR142G4352 Punica granatum HOM05D004017 ORTHO05D004612 7.2e-08 61.6 85 43.5
HanXRQChr14g0442551 Helianthus annuus HOM05D004017 ORTHO05D004612 1.2e-07 60.8 69 46.4
SGA_v2.0_scaffold61G21182 Striga asiatica HOM05D004017 ORTHO05D004612 1.2e-07 60.8 105 35.2
Aqoxy6G01621 Aquilegia oxysepala HOM05D004017 ORTHO05D004612 1.6e-07 60.5 62 46.8
AL7G15650 Arabidopsis lyrata HOM05D004017 ORTHO05D004612 1.6e-07 60.5 63 50.8
Carub.0007s0480 Capsella rubella HOM05D004017 ORTHO05D004612 2.1e-07 60.1 63 50.8
Cpa.g.sc6.367 Carica papaya HOM05D004017 ORTHO05D004612 2.1e-07 60.1 54 55.6
Thhalv10024245m.g Eutrema salsugineum HOM05D004017 ORTHO05D004612 2.1e-07 60.1 97 39.2
FAN28G2227 Fragaria x ananassa HOM05D004017 ORTHO05D004612 2.8e-07 59.7 53 49.1
C07p61210 Brassica napus HOM05D004017 ORTHO05D004612 3.6e-07 59.3 63 50.8
BolC7t46547H Brassica oleracea HOM05D004017 ORTHO05D004612 3.6e-07 59.3 63 50.8
AUR62003744 Chenopodium quinoa HOM05D004017 ORTHO05D004612 3.6e-07 59.3 53 52.8
FAN23G1226 Fragaria x ananassa HOM05D004017 ORTHO05D004612 3.6e-07 59.3 156 30.1
Lsat_1_v5_gn_2_73681 Lactuca sativa HOM05D004017 ORTHO05D004612 3.6e-07 59.3 93 38.7
Lsat_1_v5_gn_5_57160 Lactuca sativa HOM05D004017 ORTHO05D004612 3.6e-07 59.3 98 35.7
PSO541G0703 Papaver somniferum HOM05D004017 ORTHO05D004612 3.6e-07 59.3 62 45.2
RcHm_v2.0_Chr2g0097091 Rosa chinensis HOM05D004017 ORTHO05D004612 3.6e-07 59.3 70 38.6
Hund03598 Selenicereus undatus HOM05D004017 ORTHO05D004612 3.6e-07 59.3 90 41.1
A03p63640 Brassica napus HOM05D004017 ORTHO05D004612 8.0e-07 58.2 120 35.8
BraA03t15435Z Brassica rapa HOM05D004017 ORTHO05D004612 8.0e-07 58.2 120 35.8
ATR0807G175 Amborella trichopoda HOM05D004017 ORTHO05D004612 1.4e-06 57.4 83 38.6
CARHR243850 Cardamine hirsuta HOM05D004017 ORTHO05D004612 1.4e-06 57.4 63 49.2
arahy.Tifrunner.gnm1.ann1.0EHY87 Arachis hypogaea HOM05D004017 ORTHO05D004612 1.8e-06 57.0 45 57.8
COL.COLO4_22554 Corchorus olitorius HOM05D004017 ORTHO05D004612 1.8e-06 57.0 131 33.6
Gorai.003G002000 Gossypium raimondii HOM05D004017 ORTHO05D004612 4.0e-06 55.8 58 51.7
Sc03g0003980 Simmondsia chinensis HOM05D004017 ORTHO05D004612 4.0e-06 55.8 57 42.1
HPP92_020507 Vanilla planifolia HOM05D004017 ORTHO05D004612 4.0e-06 55.8 136 31.6
Aa31LG6G12480 Aethionema arabicum HOM05D004017 ORTHO05D004612 5.2e-06 55.5 63 46.0
Solyc02g088953.1 Solanum lycopersicum HOM05D015792 ORTHO05D013629 5.2e-06 55.5 29 79.3
Sopen02g033660 Solanum pennellii HOM05D015792 ORTHO05D019371 6.8e-06 55.1 30 76.7
Migut.L00849 Erythranthe guttata HOM05D004017 ORTHO05D004612 8.8e-06 54.7 86 38.4
Gohir.A02G178100 Gossypium hirsutum HOM05D004017 ORTHO05D004612 8.8e-06 54.7 58 51.7


User provided reference genes

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