Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g106810.4 Solanum lycopersicum HOM05D004087 ORTHO05D004787 8.4e-112 407.1 221 100.0
Sopen01g049120 Solanum pennellii HOM05D004087 ORTHO05D004787 4.9e-96 354.8 201 97.0
PGSC0003DMG400025835 Solanum tuberosum HOM05D004087 ORTHO05D004787 3.7e-91 338.6 201 92.5
Nitab4.5_0009103g0030 Nicotiana tabacum HOM05D004087 ORTHO05D004787 4.4e-68 261.9 228 73.2
Nitab4.5_0000772g0090 Nicotiana tabacum HOM05D004087 ORTHO05D004787 7.2e-63 244.6 210 75.2
Peaxi162Scf00016g03121 Petunia axillaris HOM05D004087 ORTHO05D004787 5.5e-55 218.4 201 69.2
CSS0031122 Camellia sinensis var. sinensis HOM05D004087 ORTHO05D004787 4.0e-45 185.7 204 58.8
TAR628G1056 Trochodendron aralioides HOM05D000194 ORTHO05D000069 6.8e-45 184.9 162 66.0
GSVIVG01037047001 Vitis vinifera HOM05D004087 ORTHO05D004787 4.4e-44 182.2 176 61.9
Dinv09536 Davidia involucrata HOM05D004087 ORTHO05D004787 2.8e-43 179.5 203 55.7
Actinidia00355 Actinidia chinensis HOM05D004087 ORTHO05D004787 3.7e-43 179.1 205 58.0
Hma1.2p1_0661F.1_g198070 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 3.7e-43 179.1 202 59.9
Eucgr.G01187 Eucalyptus grandis HOM05D004087 ORTHO05D004787 9.2e-42 174.5 166 60.8
CANSAT25G1673 Cannabis sativa HOM05D004087 ORTHO05D004787 7.7e-41 171.4 198 56.6
Cfa004696 Carpinus fangiana HOM05D004087 ORTHO05D004787 7.7e-41 171.4 196 57.1
Atru.chr5.2274 Acer truncatum HOM05D004087 ORTHO05D004787 3.8e-40 169.1 182 61.5
Nn5g30675 Nelumbo nucifera HOM05D004087 ORTHO05D004787 3.8e-40 169.1 163 61.3
ClCG02G007130 Citrullus lanatus HOM05D004087 ORTHO05D004787 1.5e-39 167.2 196 56.6
COL.COLO4_32481 Corchorus olitorius HOM05D004087 ORTHO05D004787 1.5e-39 167.2 162 62.3
PSO170G3120 Papaver somniferum HOM05D004087 ORTHO05D004787 2.5e-39 166.4 195 55.9
Ciclev10029333m.g Citrus clementina HOM05D004087 ORTHO05D004787 4.3e-39 165.6 190 60.5
Duzib132G0587 Durio zibethinus HOM05D004087 ORTHO05D004787 7.3e-39 164.9 193 54.4
PSO017G3065 Papaver somniferum HOM05D004087 ORTHO05D004787 2.1e-38 163.3 193 52.3
Sed0019763 Sechium edule HOM05D004087 ORTHO05D004787 3.6e-38 162.5 165 60.6
CiPaw.05G021000 Carya illinoinensis HOM05D004087 ORTHO05D004787 8.0e-38 161.4 180 59.4
Cc02_g20080 Coffea canephora HOM05D004087 ORTHO05D004787 1.4e-37 160.6 184 59.8
CsaV3_7G007690 Cucumis sativus L. HOM05D004087 ORTHO05D004787 1.4e-37 160.6 188 55.9
AT4G33780 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 1.8e-37 160.2 167 56.9
ECA236G0105 Erigeron canadensis HOM05D004087 ORTHO05D004787 1.8e-37 160.2 204 54.9
Potri.001G289600 Populus trichocarpa HOM05D004087 ORTHO05D004787 3.0e-37 159.5 200 52.5
Lsat_1_v5_gn_7_84781 Lactuca sativa HOM05D004087 ORTHO05D004787 4.0e-37 159.1 173 60.1
Carub.0007s0665 Capsella rubella HOM05D004087 ORTHO05D004787 8.9e-37 157.9 166 54.2
TWI59G0284 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 8.9e-37 157.9 162 61.1
Prupe.8G150800 Prunus persica HOM05D004087 ORTHO05D004787 1.2e-36 157.5 166 59.6
Sp7g31520 Schrenkiella parvula HOM05D004087 ORTHO05D004787 1.5e-36 157.1 162 56.8
Aa31sc355G20 Aethionema arabicum HOM05D004087 ORTHO05D004787 2.0e-36 156.8 212 50.9
AL7G17680 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 2.0e-36 156.8 164 56.7
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 5.7e-36 155.2 163 57.1
Thecc.02G120300 Theobroma cacao HOM05D004087 ORTHO05D004787 7.5e-36 154.8 164 57.9
HanXRQChr17g0551501 Helianthus annuus HOM05D004087 ORTHO05D004787 9.8e-36 154.5 162 58.6
Thhalv10026262m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 1.3e-35 154.1 162 58.0
Aqoxy6G02440 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 1.7e-35 153.7 170 54.1
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 2.9e-35 152.9 190 51.6
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 3.7e-35 152.5 190 51.6
THA.LOC104807209 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 3.7e-35 152.5 162 52.5
Ah.01g007120 Amaranthus hybridus HOM05D004087 ORTHO05D004787 1.8e-34 150.2 206 52.9
CARHR241870 Cardamine hirsuta HOM05D004087 ORTHO05D004787 1.8e-34 150.2 166 56.0
FAN27G0771 Fragaria x ananassa HOM05D004087 ORTHO05D004787 1.8e-34 150.2 164 56.7
Sc05g0005570 Simmondsia chinensis HOM05D004087 ORTHO05D004787 1.8e-34 150.2 194 51.0
BraA01t00439Z Brassica rapa HOM05D004087 ORTHO05D004787 2.4e-34 149.8 162 56.2
Manes.10G087100 Manihot esculenta HOM05D004087 ORTHO05D004787 3.2e-34 149.4 146 63.7
RcHm_v2.0_Chr6g0248281 Rosa chinensis HOM05D004087 ORTHO05D004787 4.1e-34 149.1 166 56.6
BcaNung04672 Brassica carinata HOM05D004087 ORTHO05D004787 5.4e-34 148.7 171 55.0
PGR042G2373 Punica granatum HOM05D004087 ORTHO05D004787 7.0e-34 148.3 174 52.3
Sabra16G0181200 Salix brachista HOM05D004087 ORTHO05D004787 9.2e-34 147.9 203 51.7
Migut.B00471 Erythranthe guttata HOM05D004087 ORTHO05D004787 1.2e-33 147.5 163 57.1
Hund06503 Selenicereus undatus HOM05D004087 ORTHO05D004787 1.2e-33 147.5 191 56.0
Hund06504 Selenicereus undatus HOM05D004087 ORTHO05D004787 1.2e-33 147.5 191 56.5
QL11p029242 Quercus lobata HOM05D004087 ORTHO05D004787 1.6e-33 147.1 198 54.0
FvH4_2g03150 Fragaria vesca HOM05D004087 ORTHO05D004787 2.0e-33 146.7 168 57.1
Oeu028917.1 Olea europaea HOM05D004087 ORTHO05D004787 2.0e-33 146.7 106 67.9
FAN20G2318 Fragaria x ananassa HOM05D004087 ORTHO05D004787 3.5e-33 146.0 165 57.6
FAN24G1045 Fragaria x ananassa HOM05D004087 ORTHO05D004787 3.5e-33 146.0 167 56.9
CDE04G2047 Ceratophyllum demersum HOM05D004087 ORTHO05D004787 1.0e-32 144.4 163 54.0
C01p04920 Brassica napus HOM05D004087 ORTHO05D004787 2.3e-32 143.3 163 54.6
FAN15G0324 Fragaria x ananassa HOM05D004087 ORTHO05D004787 6.6e-32 141.7 168 56.0
A03p62320 Brassica napus HOM05D004087 ORTHO05D004787 8.6e-32 141.4 172 54.7
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 8.6e-32 141.4 172 54.7
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 3.3e-31 139.4 110 62.7
C07p59880 Brassica napus HOM05D004087 ORTHO05D004787 3.3e-31 139.4 110 62.7
BolC7t46432H Brassica oleracea HOM05D004087 ORTHO05D004787 3.3e-31 139.4 110 62.7
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 4.3e-31 139.0 149 57.7
BolC1t00476H Brassica oleracea HOM05D004087 ORTHO05D004787 1.6e-30 137.1 158 53.8
Glyma.01G241400 Glycine max HOM05D004087 ORTHO05D004787 2.1e-30 136.7 157 51.6
ATR0739G081 Amborella trichopoda HOM05D004087 ORTHO05D004787 3.6e-30 136.0 193 44.0
Phvul.002G050600 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 3.6e-30 136.0 202 43.1
BcaC09g52189 Brassica carinata HOM05D000477 ORTHO05D000338 6.2e-30 135.2 106 61.3
CDE06G2321 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 1.8e-29 133.7 106 62.3
DCAR_021942 Daucus carota HOM05D004087 ORTHO05D004787 1.5e-28 130.6 222 47.3
MD05G1106700 Malus domestica HOM05D004087 ORTHO05D004787 2.6e-28 129.8 192 49.5
EL10Ac9g22175 Beta vulgaris HOM05D004087 ORTHO05D004787 7.5e-28 128.3 284 40.5
MBI16_g37623_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 1.3e-27 127.5 176 53.4
Zm00001eb009500 Zea mays HOM05D004087 ORTHO05D004787 3.7e-27 125.9 193 46.6
SGA_v2.0_scaffold32G12983 Striga asiatica HOM05D004087 ORTHO05D004787 1.1e-23 114.4 92 58.7
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 2.8e-22 109.8 99 58.6
Manes.05G094600 Manihot esculenta HOM05D004087 ORTHO05D004787 6.2e-22 108.6 212 36.8
Potri.008G190900 Populus trichocarpa HOM05D004087 ORTHO05D004787 5.2e-21 105.5 108 51.9
Lalb_Chr05g0217411 Lupinus albus HOM05D004087 ORTHO05D004787 1.5e-20 104.0 166 43.4
Solyc04g005120.3 Solanum lycopersicum HOM05D004087 ORTHO05D004787 2.0e-20 103.6 89 56.2
Sopen04g001140 Solanum pennellii HOM05D004087 ORTHO05D004787 2.0e-20 103.6 89 56.2
Sabra08G0144800 Salix brachista HOM05D004087 ORTHO05D004787 2.6e-20 103.2 89 58.4
CAN.G300.5 Capsicum annuum HOM05D004087 ORTHO05D004787 4.4e-20 102.4 89 56.2
BcaC03g14363 Brassica carinata HOM05D004087 ORTHO05D004787 7.5e-20 101.7 74 67.6
Glyma.01G039100 Glycine max HOM05D004087 ORTHO05D004787 7.5e-20 101.7 89 55.1
SalBow6G0931 Salvia bowleyana HOM05D004087 ORTHO05D004787 7.5e-20 101.7 87 60.9
GSVIVG01020122001 Vitis vinifera HOM05D004087 ORTHO05D004787 7.5e-20 101.7 89 58.4
arahy.Tifrunner.gnm1.ann1.0DC02M Arachis hypogaea HOM05D004087 ORTHO05D004787 9.8e-20 101.3 88 55.7
arahy.Tifrunner.gnm1.ann1.F53DZL Arachis hypogaea HOM05D004087 ORTHO05D004787 9.8e-20 101.3 88 55.7
MELO3C018531.2 Cucumis melo HOM05D004087 ORTHO05D004787 9.8e-20 101.3 143 52.4
Actinidia01168 Actinidia chinensis HOM05D004087 ORTHO05D004787 1.3e-19 100.9 108 50.9
COL.COLO4_36242 Corchorus olitorius HOM05D004087 ORTHO05D004787 1.3e-19 100.9 108 49.1
Phvul.002G079300 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 1.3e-19 100.9 89 55.1
VMungo1215G1106 Vigna mungo HOM05D004087 ORTHO05D004787 1.3e-19 100.9 89 55.1
Haze_10292 Corylus avellana HOM05D004087 ORTHO05D004787 2.2e-19 100.1 260 38.1
PSO832G0995 Papaver somniferum HOM05D004087 ORTHO05D004787 2.9e-19 99.8 108 47.2
TAR622G0570 Trochodendron aralioides HOM05D004087 ORTHO05D004787 2.9e-19 99.8 125 45.6
BolC2t07908H Brassica oleracea HOM05D004087 ORTHO05D004787 3.7e-19 99.4 73 65.8
Glyma.02G025600 Glycine max HOM05D004087 ORTHO05D004787 3.7e-19 99.4 87 54.0
Peaxi162Scf00187g00617 Petunia axillaris HOM05D004087 ORTHO05D004787 4.9e-19 99.0 95 53.7
Cpa.g.sc5.304 Carica papaya HOM05D004087 ORTHO05D004787 6.4e-19 98.6 89 51.7
Eucgr.B02582 Eucalyptus grandis HOM05D004087 ORTHO05D004787 6.4e-19 98.6 182 37.9
Medtr5g037230 Medicago truncatula HOM05D004087 ORTHO05D004787 6.4e-19 98.6 89 52.8
Hma1.2p1_0289F.1_g114450 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 1.1e-18 97.8 109 49.5
CiPaw.06G078300 Carya illinoinensis HOM05D004087 ORTHO05D004787 1.4e-18 97.4 108 48.1
Atru.chr11.1891 Acer truncatum HOM05D004087 ORTHO05D004787 1.9e-18 97.1 89 51.7
Aqoxy3G03190 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 1.9e-18 97.1 89 55.1
PSO591G0142 Papaver somniferum HOM05D004087 ORTHO05D004787 1.9e-18 97.1 89 51.7
Ciclev10032809m.g Citrus clementina HOM05D004087 ORTHO05D004787 2.4e-18 96.7 89 51.7
vmacro01944 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 2.4e-18 96.7 74 64.9
MBI01_g41231_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 3.2e-18 96.3 89 53.9
Nitab4.5_0000710g0070 Nicotiana tabacum HOM05D004087 ORTHO05D004787 3.2e-18 96.3 108 47.2
Psat2g117160 Pisum sativum HOM05D004087 ORTHO05D004787 3.2e-18 96.3 89 52.8
PGR119G1273 Punica granatum HOM05D004087 ORTHO05D004787 5.4e-18 95.5 89 53.9
TPR.G26706 Trifolium pratense HOM05D004087 ORTHO05D004787 7.1e-18 95.1 89 49.4
BcaB03g14773 Brassica carinata HOM05D004087 ORTHO05D004787 1.2e-17 94.4 89 53.9
Gohir.D04G136500 Gossypium hirsutum HOM05D004087 ORTHO05D004787 1.2e-17 94.4 89 50.6
Gorai.012G120300 Gossypium raimondii HOM05D004087 ORTHO05D004787 1.2e-17 94.4 89 50.6
BcaC08g46444 Brassica carinata HOM05D004087 ORTHO05D004787 2.1e-17 93.6 89 52.8
C06p43810 Brassica napus HOM05D004087 ORTHO05D004787 2.1e-17 93.6 89 52.8
BolC6t39453H Brassica oleracea HOM05D004087 ORTHO05D004787 2.1e-17 93.6 89 52.8
Lj2g0011291 Lotus japonicus HOM05D004087 ORTHO05D004787 2.7e-17 93.2 90 51.1
Lj5A221T58 Lonicera japonica HOM05D004087 ORTHO05D004787 3.5e-17 92.8 125 56.0
A07p36390 Brassica napus HOM05D004087 ORTHO05D004787 4.6e-17 92.4 89 52.8
VMungo1215G2093 Vigna mungo HOM05D004087 ORTHO05D004787 7.8e-17 91.7 132 42.4
A01p04540 Brassica napus HOM05D004087 ORTHO05D004787 1.0e-16 91.3 110 55.5
BraA07t31211Z Brassica rapa HOM05D004087 ORTHO05D004787 1.7e-16 90.5 89 51.7
MD10G1111500 Malus domestica HOM05D004087 ORTHO05D004787 1.7e-16 90.5 170 47.1
THA.LOC104822080 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 1.7e-16 90.5 89 47.2
Sp5g25060 Schrenkiella parvula HOM05D004087 ORTHO05D004787 3.0e-16 89.7 89 50.6
CARHR063040 Cardamine hirsuta HOM05D004087 ORTHO05D004787 6.6e-16 88.6 89 47.2
Haze_12080 Corylus avellana HOM05D004087 ORTHO05D004787 6.6e-16 88.6 167 34.7
Thhalv10019201m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 1.5e-15 87.4 89 47.2
Carub.0002s1665 Capsella rubella HOM05D004087 ORTHO05D004787 1.9e-15 87.0 89 47.2
Dinv24938 Davidia involucrata HOM05D004087 ORTHO05D004787 1.9e-15 87.0 78 56.4
AL2G29180 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 2.5e-15 86.7 89 47.2
Gohir.A13G047950 Gossypium hirsutum HOM05D004087 ORTHO05D004787 2.5e-15 86.7 198 37.9
AT1G69935 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 7.3e-15 85.1 89 46.1
Cfa009049 Carpinus fangiana HOM05D004087 ORTHO05D004787 2.1e-14 83.6 180 32.2
C02p17780 Brassica napus HOM05D004087 ORTHO05D004787 2.8e-14 83.2 60 66.7
RhsimUnG0040800 Rhododendron simsii HOM05D004087 ORTHO05D004787 1.8e-13 80.5 92 48.9
Rhsim12G0127500 Rhododendron simsii HOM05D004087 ORTHO05D004787 4.0e-13 79.3 108 41.7
unitig_0.g632 Utricularia gibba HOM05D004087 ORTHO05D004787 5.2e-13 79.0 165 41.8
Cpa.g.sc106.30 Carica papaya HOM05D004087 ORTHO05D004787 6.4e-11 72.0 109 55.0
Mapoly0011s0173 Marchantia polymorpha HOM05D004087 ORTHO05D004787 1.1e-10 71.2 85 32.9
AUR62030868 Chenopodium quinoa HOM05D004087 ORTHO05D004787 3.2e-10 69.7 91 46.2
Ca_28186_v3 Cicer arietinum L. HOM05D004087 ORTHO05D004787 5.4e-10 68.9 79 46.8
AagrBONN_evm.TU.Sc2ySwM_344.3821 Anthoceros agrestis HOM05D004087 ORTHO05D004787 2.1e-09 67.0 99 39.4
Duzib268G0252 Durio zibethinus HOM05D004087 ORTHO05D004787 6.0e-09 65.5 65 53.8
Lsat_1_v5_gn_3_112521 Lactuca sativa HOM05D004087 ORTHO05D004787 5.1e-08 62.4 89 51.7
Lsat_1_v5_gn_9_118200 Lactuca sativa HOM05D004087 ORTHO05D004787 6.6e-08 62.0 102 48.0
Nn1g03866 Nelumbo nucifera HOM05D004087 ORTHO05D004787 8.6e-08 61.6 108 34.3
QL03p066700 Quercus lobata HOM05D004087 ORTHO05D004787 7.3e-07 58.5 54 53.7
PGSC0003DMG400001914 Solanum tuberosum HOM05D000067 ORTHO05D000097 1.6e-06 57.4 94 39.4
Os02g0531900 Oryza sativa ssp. japonica HOM05D004087 ORTHO05D004787 8.1e-06 55.1 49 53.1


User provided reference genes

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