Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g103440.3 Solanum lycopersicum HOM05D000974 ORTHO05D006000 1.8e-298 1028.5 515 100.0
Sopen01g045790 Solanum pennellii HOM05D000974 ORTHO05D006000 2.5e-292 1008.1 515 98.3
PGSC0003DMG400024886 Solanum tuberosum HOM05D000974 ORTHO05D006000 1.8e-290 1001.9 515 97.7
Peaxi162Scf00011g01426 Petunia axillaris HOM05D000974 ORTHO05D006000 3.5e-270 934.5 516 89.9
CAN.G855.13 Capsicum annuum HOM05D000974 ORTHO05D006000 4.9e-264 914.1 519 90.0
Nitab4.5_0002347g0020 Nicotiana tabacum HOM05D000974 ORTHO05D006000 3.9e-261 904.4 516 89.1
Nitab4.5_0003816g0050 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.1e-260 902.9 516 88.6
Dinv29601 Davidia involucrata HOM05D000974 ORTHO05D006000 7.9e-230 800.4 526 77.4
Dinv19422 Davidia involucrata HOM05D000974 ORTHO05D006000 3.0e-229 798.5 525 78.5
Rhsim07G0227600 Rhododendron simsii HOM05D000974 ORTHO05D006000 1.8e-226 789.3 523 77.6
vmacro01708 Vaccinium macrocarpon HOM05D000974 ORTHO05D006000 9.1e-226 786.9 472 82.2
CSS0025059 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 2.6e-225 785.4 524 76.3
Rhsim07G0227800 Rhododendron simsii HOM05D000974 ORTHO05D006000 7.7e-225 783.9 523 76.7
COL.COLO4_17713 Corchorus olitorius HOM05D000974 ORTHO05D006000 2.9e-224 781.9 530 76.0
DCAR_006665 Daucus carota HOM05D000974 ORTHO05D006000 1.1e-223 780.0 520 76.9
Lj5C267T12 Lonicera japonica HOM05D000974 ORTHO05D006000 2.5e-223 778.9 524 76.7
Cc02_g23270 Coffea canephora HOM05D000974 ORTHO05D006000 1.2e-222 776.5 518 76.1
CSS0010237 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.6e-222 776.2 524 75.6
Thecc.02G017200 Theobroma cacao HOM05D000974 ORTHO05D006000 6.1e-222 774.2 481 80.2
Ciclev10000877m.g Citrus clementina HOM05D000974 ORTHO05D006000 1.0e-221 773.5 522 77.0
CANSAT54G1032 Cannabis sativa HOM05D000974 ORTHO05D006000 1.4e-221 773.1 516 76.4
Atru.chr9.317 Acer truncatum HOM05D000974 ORTHO05D006000 5.2e-221 771.2 447 84.8
Duzib132G0946 Durio zibethinus HOM05D000974 ORTHO05D006000 8.8e-221 770.4 462 81.6
MSTRG.5204 Avicennia marina HOM05D000974 ORTHO05D006000 2.6e-220 768.8 491 79.4
Atru.chr1.4075 Acer truncatum HOM05D000974 ORTHO05D006000 9.7e-220 766.9 528 75.2
Manes.07G025100 Manihot esculenta HOM05D000974 ORTHO05D006000 9.7e-220 766.9 532 74.6
Gorai.008G045600 Gossypium raimondii HOM05D000974 ORTHO05D006000 1.3e-219 766.5 447 83.4
Ca_04891_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 2.2e-219 765.8 441 84.4
Duzib052G0127 Durio zibethinus HOM05D000974 ORTHO05D006000 6.3e-219 764.2 478 79.1
Gohir.D12G043400 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.8e-218 762.7 447 82.8
Rhsim11G0122100 Rhododendron simsii HOM05D000974 ORTHO05D006000 1.6e-217 759.6 449 84.0
Potri.004G225500 Populus trichocarpa HOM05D000974 ORTHO05D006000 4.5e-217 758.1 477 79.5
GSVIVG01038784001 Vitis vinifera HOM05D000974 ORTHO05D006000 1.3e-216 756.5 530 72.8
ClCG10G007320 Citrullus lanatus HOM05D000974 ORTHO05D006000 3.8e-216 755.0 533 73.2
Glyma.10G156900 Glycine max HOM05D000974 ORTHO05D006000 3.8e-216 755.0 527 72.7
Psat2g146560 Pisum sativum HOM05D000974 ORTHO05D006000 5.0e-216 754.6 526 73.0
TAR381G1040 Trochodendron aralioides HOM05D000974 ORTHO05D006000 6.5e-216 754.2 530 74.0
CsaV3_3G006560 Cucumis sativus L. HOM05D000974 ORTHO05D006000 8.5e-216 753.8 533 72.4
MELO3C016483.2 Cucumis melo HOM05D000974 ORTHO05D006000 1.5e-215 753.1 533 72.2
Phvul.007G182100 Phaseolus vulgaris HOM05D000974 ORTHO05D006000 2.5e-215 752.3 446 82.3
Cpa.g.sc113.32 Carica papaya HOM05D000974 ORTHO05D006000 9.4e-215 750.4 471 79.6
Medtr5g025310 Medicago truncatula HOM05D000974 ORTHO05D006000 8.0e-214 747.3 441 82.3
ECA236G4964 Erigeron canadensis HOM05D000974 ORTHO05D006000 1.0e-213 746.9 455 80.2
Sed0019412 Sechium edule HOM05D000974 ORTHO05D006000 1.0e-213 746.9 465 79.4
Ca_12589_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 1.8e-213 746.1 476 78.2
Nn5g27502 Nelumbo nucifera HOM05D000974 ORTHO05D006000 3.0e-213 745.3 513 72.7
VMungo0720G1793 Vigna mungo HOM05D000974 ORTHO05D006000 3.0e-213 745.3 526 72.4
TWI15G1214 Tripterygium wilfordii HOM05D000974 ORTHO05D006000 1.2e-212 743.4 536 71.6
QL02p100861 Quercus lobata HOM05D000974 ORTHO05D006000 1.5e-212 743.0 478 77.8
MBI06_g06706_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D006000 2.0e-212 742.7 522 72.4
Cfa004480 Carpinus fangiana HOM05D000974 ORTHO05D006000 2.6e-212 742.3 424 84.4
HanXRQChr11g0329691 Helianthus annuus HOM05D000974 ORTHO05D006000 2.6e-212 742.3 516 73.3
AUR62020045 Chenopodium quinoa HOM05D000974 ORTHO05D006000 7.5e-212 740.7 438 81.7
HanXRQChr06g0176431 Helianthus annuus HOM05D000974 ORTHO05D006000 3.7e-211 738.4 516 73.4
THA.LOC104816783 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 3.7e-211 738.4 489 76.1
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 8.2e-211 737.3 443 82.4
Haze_10037 Corylus avellana HOM05D000974 ORTHO05D006000 1.4e-210 736.5 424 84.2
Lsat_1_v5_gn_7_76800 Lactuca sativa HOM05D000974 ORTHO05D006000 1.4e-210 736.5 517 72.7
AUR62001730 Chenopodium quinoa HOM05D000974 ORTHO05D006000 2.4e-210 735.7 438 81.5
PGR142G3566 Punica granatum HOM05D000974 ORTHO05D006000 2.4e-210 735.7 439 82.9
Gohir.A01G185000 Gossypium hirsutum HOM05D000974 ORTHO05D006000 5.3e-210 734.6 430 82.6
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 7.0e-210 734.2 513 74.1
THA.LOC104816816 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 9.1e-210 733.8 434 82.9
HPP92_001871 Vanilla planifolia HOM05D000974 ORTHO05D006000 9.1e-210 733.8 432 82.6
TPR.G5252 Trifolium pratense HOM05D000974 ORTHO05D006000 1.2e-209 733.4 444 81.8
Eucgr.I02775 Eucalyptus grandis HOM05D000974 ORTHO05D006000 1.6e-209 733.0 422 84.8
Hund18885 Selenicereus undatus HOM05D000974 ORTHO05D006000 2.0e-209 732.6 470 77.2
Ah.08g220180 Amaranthus hybridus HOM05D000974 ORTHO05D006000 2.7e-209 732.3 481 76.9
Sabra01G0171200 Salix brachista HOM05D000974 ORTHO05D006000 4.5e-209 731.5 552 69.2
Prupe.1G580800 Prunus persica HOM05D000974 ORTHO05D006000 2.9e-208 728.8 425 84.5
Lj5g0022297 Lotus japonicus HOM05D000974 ORTHO05D006000 1.5e-207 726.5 520 71.2
AL1G20430 Arabidopsis lyrata HOM05D000974 ORTHO05D006000 1.9e-207 726.1 477 76.9
Carub.0001s0921 Capsella rubella HOM05D000974 ORTHO05D006000 1.9e-207 726.1 444 80.6
Gorai.002G218200 Gossypium raimondii HOM05D000974 ORTHO05D006000 1.9e-207 726.1 482 75.9
CiPaw.06G174600 Carya illinoinensis HOM05D000974 ORTHO05D006000 3.2e-207 725.3 498 74.1
Sc17g0003920 Simmondsia chinensis HOM05D000974 ORTHO05D006000 4.2e-207 724.9 481 75.7
arahy.Tifrunner.gnm1.ann1.0Q8MRK Arachis hypogaea HOM05D000974 ORTHO05D006000 1.6e-206 723.0 527 70.4
arahy.Tifrunner.gnm1.ann1.DWF5LU Arachis hypogaea HOM05D000974 ORTHO05D006000 1.6e-206 723.0 527 70.4
EL10Ac7g16076 Beta vulgaris HOM05D000974 ORTHO05D006000 3.6e-206 721.8 474 76.4
MD08G1243400 Malus domestica HOM05D000974 ORTHO05D006000 6.1e-206 721.1 425 83.1
Lalb_Chr21g0311651 Lupinus albus HOM05D000974 ORTHO05D006000 1.4e-205 719.9 424 82.3
SalBow8G2098 Salvia bowleyana HOM05D000974 ORTHO05D006000 2.3e-205 719.2 422 82.9
MD15G1437700 Malus domestica HOM05D000974 ORTHO05D006000 1.5e-204 716.5 569 67.8
BcaB03g13541 Brassica carinata HOM05D000974 ORTHO05D006000 4.4e-204 714.9 506 72.5
A06p06550 Brassica napus HOM05D000974 ORTHO05D006000 4.4e-204 714.9 443 80.1
SalBow4G1817 Salvia bowleyana HOM05D000974 ORTHO05D006000 5.7e-204 714.5 422 82.7
AT1G09830 Arabidopsis thaliana HOM05D000974 ORTHO05D006000 9.8e-204 713.8 449 79.1
Aa31LG1G5090 Aethionema arabicum HOM05D000974 ORTHO05D006000 2.2e-203 712.6 529 69.4
BcaC07g38528 Brassica carinata HOM05D000974 ORTHO05D006000 8.3e-203 710.7 489 73.2
Os08g0191200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 1.1e-202 710.3 526 69.0
Os12g0197100 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 1.2e-201 706.8 509 70.1
Sp1g08460 Schrenkiella parvula HOM05D000974 ORTHO05D006000 3.5e-201 705.3 508 71.1
ATR0598G043 Amborella trichopoda HOM05D000974 ORTHO05D006000 4.5e-201 704.9 438 77.4
A08p34320 Brassica napus HOM05D000974 ORTHO05D006000 4.5e-201 704.9 505 70.9
CARHR009850 Cardamine hirsuta HOM05D000974 ORTHO05D006000 1.3e-200 703.4 518 69.9
Migut.N00845 Erythranthe guttata HOM05D000974 ORTHO05D006000 1.7e-200 703.0 467 76.7
Aqoxy1G01816 Aquilegia oxysepala HOM05D000974 ORTHO05D006000 2.5e-199 699.1 427 79.9
SEGI_14806 Sequoiadendron giganteum HOM05D000974 ORTHO05D006000 9.5e-199 697.2 428 78.5
BolC8t48951H Brassica oleracea HOM05D000974 ORTHO05D006000 1.6e-198 696.4 489 72.0
BcaC05g24841 Brassica carinata HOM05D000974 ORTHO05D006000 6.1e-198 694.5 422 81.3
Thhalv10007333m.g Eutrema salsugineum HOM05D000974 ORTHO05D006000 1.8e-197 693.0 462 74.9
C05p07940 Brassica napus HOM05D000974 ORTHO05D006000 4.0e-197 691.8 422 81.0
BolC5t29546H Brassica oleracea HOM05D000974 ORTHO05D006000 4.0e-197 691.8 422 81.0
Zm00001eb294330 Zea mays HOM05D000974 ORTHO05D006000 8.9e-197 690.6 434 77.4
BraA08t35343Z Brassica rapa HOM05D000974 ORTHO05D006000 2.0e-196 689.5 508 69.5
HPP92_026669 Vanilla planifolia HOM05D000974 ORTHO05D006000 2.0e-196 689.5 431 76.1
BraA06t23866Z Brassica rapa HOM05D000974 ORTHO05D006000 7.5e-196 687.6 495 70.9
PSO170G5315 Papaver somniferum HOM05D000974 ORTHO05D006000 1.4e-194 683.3 549 64.5
PSO782G2965 Papaver somniferum HOM05D000974 ORTHO05D006000 5.4e-194 681.4 545 64.4
SGA_v2.0_scaffold42G15899 Striga asiatica HOM05D000974 ORTHO05D006000 4.5e-193 678.3 573 63.7
FAN10G2816 Fragaria x ananassa HOM05D000974 ORTHO05D006000 3.8e-192 675.2 403 82.9
Gohir.D01G176200 Gossypium hirsutum HOM05D000974 ORTHO05D006000 3.8e-192 675.2 482 72.0
CDE02G0137 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 2.5e-183 646.0 404 77.2
Pp3c19_9430 Physcomitrium patens HOM05D000974 ORTHO05D006000 3.3e-183 645.6 439 71.3
SMO358G0426 Selaginella moellendorffii HOM05D000974 ORTHO05D006000 3.1e-181 639.0 426 71.6
Pp3c22_7830 Physcomitrium patens HOM05D000974 ORTHO05D006000 4.0e-181 638.6 432 70.6
Mapoly0041s0149 Marchantia polymorpha HOM05D000974 ORTHO05D006000 5.2e-181 638.3 491 63.1
AagrBONN_evm.TU.Sc2ySwM_368.1734 Anthoceros agrestis HOM05D000974 ORTHO05D006000 2.1e-174 616.3 428 69.4
CDE04G1010 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 3.6e-166 589.0 365 78.4
Nitab4.5_0003281g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 4.9e-163 578.6 302 95.7
Oeu030849.1 Olea europaea HOM05D000974 ORTHO05D006000 6.0e-161 571.6 324 86.7
Nitab4.5_0003893g0040 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.2e-158 563.9 338 86.7
Gohir.A12G043800 Gossypium hirsutum HOM05D000974 ORTHO05D006000 3.5e-153 545.8 312 86.2
C08p13210 Brassica napus HOM05D000974 ORTHO05D006000 1.6e-145 520.4 364 72.8
CBR_g36226 Chara braunii HOM05D000974 ORTHO05D006000 7.9e-145 518.1 432 60.2
unitig_8.g3587 Utricularia gibba HOM05D000974 ORTHO05D006000 2.8e-142 509.6 300 82.3
CSS0038090 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 2.4e-141 506.5 299 84.6
Cre18.g749497 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 1.5e-140 503.8 428 59.6
Eucgr.I02773 Eucalyptus grandis HOM05D000974 ORTHO05D006000 3.4e-140 502.7 326 75.8
MCO16G439 Micromonas commoda HOM05D000974 ORTHO05D006000 2.5e-138 496.5 432 60.2
CSS0048615 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.0e-131 474.6 319 76.2
Zm00001eb342350 Zea mays HOM05D000974 ORTHO05D006000 4.6e-121 439.1 273 77.3
PRCOL_00005058 Prasinoderma coloniale HOM05D000974 ORTHO05D006000 1.5e-119 434.1 424 55.2
Pp3s32_121 Physcomitrium patens HOM05D000974 ORTHO05D006000 2.9e-107 393.3 432 46.5
arahy.Tifrunner.gnm1.ann1.FF9LB7 Arachis hypogaea HOM05D000974 ORTHO05D006000 1.0e-96 358.2 242 75.2
Cfa023437 Carpinus fangiana HOM05D000974 ORTHO05D006000 4.1e-93 346.3 435 43.7
Nitab4.5_0003893g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.0e-88 331.6 176 90.3
Cfa022594 Carpinus fangiana HOM05D000974 ORTHO05D006000 6.1e-73 279.3 355 42.5
Nitab4.5_0001773g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 3.5e-60 236.9 186 71.0
CSS0011192 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.5e-55 221.5 133 78.2
arahy.Tifrunner.gnm1.ann1.LT2KYF Arachis hypogaea HOM05D000974 ORTHO05D006000 8.9e-48 195.7 125 78.4
unitig_8.g3588 Utricularia gibba HOM05D000974 ORTHO05D006000 3.8e-46 190.3 120 73.3
Cre18.g749647 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 8.4e-46 189.1 180 53.9
Hund18887 Selenicereus undatus HOM05D000974 ORTHO05D006000 1.1e-45 188.7 167 63.5
CSS0022082 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 7.3e-42 176.0 131 65.6
Actinidia38994 Actinidia chinensis HOM05D000974 ORTHO05D006000 9.3e-37 159.1 144 56.2
A07p04420 Brassica napus HOM05D000974 ORTHO05D016809 4.5e-31 140.2 108 63.9
arahy.Tifrunner.gnm1.ann1.3IC4JN Arachis hypogaea HOM05D000974 ORTHO05D006000 5.8e-31 139.8 90 76.7
BraA07t28236Z Brassica rapa HOM05D000974 ORTHO05D016809 2.2e-30 137.9 106 64.2
BcaC04g19187 Brassica carinata HOM05D000974 ORTHO05D016809 3.5e-28 130.6 80 76.2
A06p28170 Brassica napus HOM05D000974 ORTHO05D016809 7.9e-28 129.4 80 76.2
BcaC01g01590 Brassica carinata HOM05D000974 ORTHO05D016809 1.3e-27 128.6 80 75.0
C03p74280 Brassica napus HOM05D000974 ORTHO05D016809 5.1e-27 126.7 80 73.8
C08p14510 Brassica napus HOM05D000974 ORTHO05D016809 1.5e-26 125.2 77 75.3
Nitab4.5_0000787g0090 Nicotiana tabacum HOM05D000017 ORTHO05D000308 1.9e-26 124.8 276 37.0
Sabra03G0003100 Salix brachista HOM05D000974 ORTHO05D006000 1.6e-25 121.7 78 75.6
BcaC01g02641 Brassica carinata HOM05D000974 ORTHO05D016809 7.6e-23 112.8 89 60.7
C03p62530 Brassica napus HOM05D000974 ORTHO05D016809 1.7e-22 111.7 141 46.8
BolC3t18510H Brassica oleracea HOM05D000974 ORTHO05D016809 1.7e-22 111.7 141 46.8
Haze_26160 Corylus avellana HOM05D003155 ORTHO05D004342 5.5e-21 106.7 258 31.8
Nitab4.5_0001773g0070 Nicotiana tabacum HOM05D000974 ORTHO05D285698 1.3e-17 95.5 67 70.1
arahy.Tifrunner.gnm1.ann1.G9FX3A Arachis hypogaea HOM05D000974 ORTHO05D083560 2.4e-16 91.3 53 81.1
BcaB03g13286 Brassica carinata HOM05D000974 ORTHO05D091645 8.5e-06 56.2 28 96.4


User provided reference genes

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