Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g102950.3 Solanum lycopersicum HOM05D002380 ORTHO05D008286 0.0e+00 1220.3 610 100.0
Sopen01g045360 Solanum pennellii HOM05D002380 ORTHO05D008286 0.0e+00 1178.3 599 98.5
CAN.G855.60 Capsicum annuum HOM05D002380 ORTHO05D008286 0.0e+00 1131.7 611 92.5
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 4.2e-312 1074.3 607 88.1
Peaxi162Scf00011g02118 Petunia axillaris HOM05D002380 ORTHO05D008286 7.3e-291 1003.4 625 82.7
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 1.3e-284 982.6 604 82.3
Actinidia13740 Actinidia chinensis HOM05D002380 ORTHO05D008286 4.9e-271 937.6 603 75.1
CSS0029680 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D008286 3.5e-269 931.4 587 77.5
Cc05_g03220 Coffea canephora HOM05D002380 ORTHO05D008286 4.8e-266 921.0 573 78.4
GSVIVG01030484001 Vitis vinifera HOM05D002380 ORTHO05D008286 2.0e-264 915.6 581 77.1
Cfa014331 Carpinus fangiana HOM05D002380 ORTHO05D008286 4.5e-264 914.4 584 76.9
Hma1.2p1_0445F.1_g154520 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 1.1e-262 909.8 555 78.6
QL08p031162 Quercus lobata HOM05D002380 ORTHO05D008286 6.7e-260 900.6 578 76.1
TWI18G0959 Tripterygium wilfordii HOM05D002380 ORTHO05D008286 3.3e-259 898.3 574 75.6
Potri.014G156800 Populus trichocarpa HOM05D002380 ORTHO05D008286 8.2e-258 893.6 586 74.7
Nn1g03403 Nelumbo nucifera HOM05D002380 ORTHO05D008286 1.2e-256 889.8 587 74.4
SalBow1G4831 Salvia bowleyana HOM05D002380 ORTHO05D008286 2.0e-256 889.0 589 73.7
SalBow1G6561 Salvia bowleyana HOM05D002380 ORTHO05D008286 2.6e-256 888.6 589 73.5
FvH4_6g42610 Fragaria vesca HOM05D002380 ORTHO05D008286 2.2e-255 885.6 556 76.1
CiPaw.04G112000 Carya illinoinensis HOM05D002380 ORTHO05D008286 3.8e-255 884.8 583 74.1
ECA234G2702 Erigeron canadensis HOM05D002380 ORTHO05D008286 4.9e-255 884.4 589 73.0
MD09G1112100 Malus domestica HOM05D002380 ORTHO05D008286 4.9e-255 884.4 589 73.7
Migut.H01235 Erythranthe guttata HOM05D002380 ORTHO05D008286 6.5e-255 884.0 574 74.7
Duzib138G0368 Durio zibethinus HOM05D002380 ORTHO05D008286 5.5e-254 880.9 580 74.5
HanXRQChr10g0306601 Helianthus annuus HOM05D002380 ORTHO05D008286 1.6e-253 879.4 581 73.7
Gohir.D07G193100 Gossypium hirsutum HOM05D002380 ORTHO05D008286 2.1e-253 879.0 580 74.5
Gorai.001G216200 Gossypium raimondii HOM05D002380 ORTHO05D008286 2.7e-253 878.6 580 74.5
Gohir.A07G186600 Gossypium hirsutum HOM05D002380 ORTHO05D008286 3.5e-253 878.2 580 74.3
LjContig00564g0001978 Lotus japonicus HOM05D002380 ORTHO05D008286 1.3e-252 876.3 557 75.4
LjContig00564g0004339 Lotus japonicus HOM05D002380 ORTHO05D008286 1.3e-252 876.3 557 75.4
PSO541G2284 Papaver somniferum HOM05D002380 ORTHO05D008286 1.3e-252 876.3 557 75.8
Medtr8g465870 Medicago truncatula HOM05D002380 ORTHO05D008286 8.7e-252 873.6 579 73.4
ClCG02G002150 Citrullus lanatus HOM05D002380 ORTHO05D008286 1.9e-251 872.5 556 75.4
RcHm_v2.0_Chr2g0158461 Rosa chinensis HOM05D002380 ORTHO05D008286 3.3e-251 871.7 583 73.1
arahy.Tifrunner.gnm1.ann1.Y9X1U6 Arachis hypogaea HOM05D002380 ORTHO05D008286 1.3e-250 869.8 580 72.6
FAN05G1087 Fragaria x ananassa HOM05D002380 ORTHO05D008286 4.8e-250 867.8 612 70.4
Prupe.3G212600 Prunus persica HOM05D002380 ORTHO05D008286 6.3e-250 867.5 538 77.7
Ciclev10014719m.g Citrus clementina HOM05D002380 ORTHO05D008286 1.1e-249 866.7 580 73.8
Lj1A778T40 Lonicera japonica HOM05D002380 ORTHO05D008286 6.9e-249 864.0 665 66.2
Sed0027871 Sechium edule HOM05D002380 ORTHO05D008286 7.7e-248 860.5 557 74.9
VMungo0647G2578 Vigna mungo HOM05D002380 ORTHO05D008286 1.3e-247 859.8 572 73.3
Sabra14G0118600 Salix brachista HOM05D002380 ORTHO05D008286 1.7e-247 859.4 657 65.8
arahy.Tifrunner.gnm1.ann1.C2B2I7 Arachis hypogaea HOM05D002380 ORTHO05D008286 3.8e-247 858.2 589 71.3
CsaV3_7G003340 Cucumis sativus L. HOM05D002380 ORTHO05D008286 3.8e-247 858.2 567 73.0
Glyma.14G046600 Glycine max HOM05D002380 ORTHO05D008286 1.9e-246 855.9 557 74.5
CANSAT64G0203 Cannabis sativa HOM05D002380 ORTHO05D008286 2.5e-246 855.5 590 71.4
FAN14G4830 Fragaria x ananassa HOM05D002380 ORTHO05D008286 5.5e-246 854.4 607 70.3
Thecc.01G180100 Theobroma cacao HOM05D002380 ORTHO05D008286 1.2e-245 853.2 579 72.7
Rhsim06G0166100 Rhododendron simsii HOM05D002380 ORTHO05D008286 3.6e-245 851.7 590 70.8
Atru.chr6.3236 Acer truncatum HOM05D002380 ORTHO05D008286 6.1e-245 850.9 585 72.3
Eucgr.A01100 Eucalyptus grandis HOM05D002380 ORTHO05D008286 6.1e-245 850.9 550 74.5
AUR62037919 Chenopodium quinoa HOM05D002380 ORTHO05D008286 2.0e-243 845.9 584 71.1
AUR62040170 Chenopodium quinoa HOM05D002380 ORTHO05D008286 2.0e-243 845.9 584 71.4
PSO675G4452 Papaver somniferum HOM05D002380 ORTHO05D008286 2.5e-243 845.5 557 74.1
PGR042G3960 Punica granatum HOM05D002380 ORTHO05D008286 2.0e-240 835.9 547 74.2
Phvul.008G211500 Phaseolus vulgaris HOM05D002380 ORTHO05D008286 7.2e-238 827.4 578 72.1
DCAR_019750 Daucus carota HOM05D002380 ORTHO05D008286 9.4e-238 827.0 588 70.1
Lsat_1_v5_gn_5_123621 Lactuca sativa HOM05D002380 ORTHO05D008286 1.3e-234 816.6 576 70.1
Aa31LG5G4710 Aethionema arabicum HOM05D002380 ORTHO05D008286 1.4e-233 813.1 581 68.5
Carub.0004s1397 Capsella rubella HOM05D002380 ORTHO05D008286 4.1e-233 811.6 555 70.8
THA.LOC104826140 Tarenaya hassleriana HOM05D002380 ORTHO05D008286 5.9e-232 807.7 581 68.3
Sp4g14960 Schrenkiella parvula HOM05D002380 ORTHO05D008286 1.7e-231 806.2 583 67.9
A03p18220 Brassica napus HOM05D002380 ORTHO05D008286 5.0e-231 804.7 581 67.6
Thhalv10016422m.g Eutrema salsugineum HOM05D002380 ORTHO05D008286 8.5e-231 803.9 583 68.1
BraA03t11082Z Brassica rapa HOM05D002380 ORTHO05D008286 1.1e-230 803.5 581 67.6
BcaC01g05900 Brassica carinata HOM05D002380 ORTHO05D008286 1.2e-229 800.0 582 67.5
C03p21270 Brassica napus HOM05D002380 ORTHO05D008286 1.6e-229 799.7 582 67.4
BolC3t14508H Brassica oleracea HOM05D002380 ORTHO05D008286 6.1e-229 797.7 582 67.5
CARHR126480 Cardamine hirsuta HOM05D002380 ORTHO05D008286 5.2e-228 794.7 555 69.4
CDE04G2212 Ceratophyllum demersum HOM05D002380 ORTHO05D008286 1.5e-227 793.1 587 67.0
TAR626G1235 Trochodendron aralioides HOM05D002380 ORTHO05D008286 2.0e-227 792.7 508 77.2
BcaB01g03970 Brassica carinata HOM05D002380 ORTHO05D008286 2.6e-227 792.3 583 66.7
Os08g0422000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D008286 2.6e-227 792.3 545 69.9
AL4G28040 Arabidopsis lyrata HOM05D002380 ORTHO05D008286 7.4e-227 790.8 538 70.8
ATR0059G008 Amborella trichopoda HOM05D002380 ORTHO05D008286 8.2e-226 787.3 564 67.6
Lalb_Chr04g0249901 Lupinus albus HOM05D002380 ORTHO05D008286 1.8e-225 786.2 501 74.1
Ca_06119_v3 Cicer arietinum L. HOM05D002380 ORTHO05D008286 1.2e-224 783.5 526 73.6
Psat0s2606g0080 Pisum sativum HOM05D002380 ORTHO05D008286 5.5e-222 774.6 505 75.8
EL10Ac7g16733 Beta vulgaris HOM05D002380 ORTHO05D008286 8.8e-220 767.3 549 68.1
AUR62044039 Chenopodium quinoa HOM05D002380 ORTHO05D008286 4.4e-219 765.0 584 66.4
Manes.12G071600 Manihot esculenta HOM05D002380 ORTHO05D008286 5.0e-215 751.5 486 75.1
vmacro12176 Vaccinium macrocarpon HOM05D002380 ORTHO05D008286 1.3e-210 736.9 602 63.6
Sc21g0001190 Simmondsia chinensis HOM05D002380 ORTHO05D008286 2.7e-208 729.2 500 71.8
MELO3C018839.2 Cucumis melo HOM05D002380 ORTHO05D008286 1.0e-207 727.2 552 66.7
Hma1.2p1_0445F.1_g154530 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 3.0e-204 715.7 562 64.9
Haze_12786 Corylus avellana HOM05D002380 ORTHO05D008286 8.3e-202 707.6 588 63.4
HPP92_026432 Vanilla planifolia HOM05D002380 ORTHO05D008286 1.4e-201 706.8 478 68.2
Dinv08737 Davidia involucrata HOM05D002380 ORTHO05D008286 5.2e-196 688.3 451 75.2
PGSC0003DMG400020719 Solanum tuberosum HOM05D002380 ORTHO05D008286 3.6e-189 665.6 332 98.2
Pp3c11_22720 Physcomitrium patens HOM05D002380 ORTHO05D008286 1.8e-188 663.3 544 58.3
Mapoly0041s0126 Marchantia polymorpha HOM05D002380 ORTHO05D008286 1.9e-182 643.3 575 54.6
Aqoxy1G02993 Aquilegia oxysepala HOM05D002380 ORTHO05D008286 4.4e-179 632.1 553 59.3
AagrBONN_evm.TU.Sc2ySwM_368.2332 Anthoceros agrestis HOM05D002380 ORTHO05D008286 1.3e-175 620.5 520 58.3
Hma1.2p1_0895F.1_g233700 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 9.9e-155 551.2 342 76.0
FAN02G0433 Fragaria x ananassa HOM05D002380 ORTHO05D008286 2.2e-154 550.1 559 55.5
COL.COLO4_21855 Corchorus olitorius HOM05D002380 ORTHO05D008286 6.2e-149 531.9 335 77.3
Cpa.g.sc132.5 Carica papaya HOM05D002380 ORTHO05D008286 5.8e-147 525.4 385 68.1
SGA_v2.0_scaffold159G37563 Striga asiatica HOM05D002380 ORTHO05D001198 5.8e-147 525.4 570 51.1
Hund20419 Selenicereus undatus HOM05D002380 ORTHO05D008286 4.6e-144 515.8 342 69.9
Zm00001eb179140 Zea mays HOM05D002380 ORTHO05D008286 3.2e-137 493.0 445 58.7
Cre06.g264250 Chlamydomonas reinhardtii HOM05D002380 ORTHO05D008286 2.3e-135 486.9 572 44.6
AT2G32640 Arabidopsis thaliana HOM05D002380 ORTHO05D008286 1.5e-134 484.2 379 64.1
Ah.15g091260 Amaranthus hybridus HOM05D002380 ORTHO05D008286 3.0e-127 459.9 434 56.9
TPR.G26188 Trifolium pratense HOM05D002380 ORTHO05D008286 4.1e-124 449.5 308 72.7
SMO111G0098 Selaginella moellendorffii HOM05D002380 ORTHO05D008286 2.5e-105 387.1 375 53.1
Cre04.g221550 Chlamydomonas reinhardtii HOM05D002380 ORTHO05D008286 5.0e-98 362.8 627 35.4
Cpa.g.sc132.4 Carica papaya HOM05D002380 ORTHO05D008286 1.2e-96 358.2 204 82.4
unitig_62.g23230 Utricularia gibba HOM05D002380 ORTHO05D008286 1.3e-90 338.2 246 67.9
MBI19_g44049_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 3.4e-86 323.6 235 67.7
SEGI_31657 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 4.0e-55 220.3 160 66.2
MBI19_g40900_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 2.0e-54 218.0 140 72.9
SEGI_17941 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 4.4e-46 190.3 160 60.6
COL.COLO4_21854 Corchorus olitorius HOM05D002380 ORTHO05D008286 4.2e-44 183.7 128 67.2
CBR_g8452 Chara braunii HOM05D002380 ORTHO05D008286 2.7e-43 181.0 130 60.8
Aqoxy1G02984 Aquilegia oxysepala HOM05D002380 ORTHO05D008286 4.8e-40 170.2 99 76.8
Hund20420 Selenicereus undatus HOM05D002380 ORTHO05D010615 5.3e-31 140.2 92 72.8
MBI19_g42463_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 2.0e-30 138.3 160 50.0
SEGI_28059 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 6.7e-26 123.2 69 79.7
CBR_g12620 Chara braunii HOM05D005350 ORTHO05D008838 5.7e-25 120.2 100 51.0
Actinidia09730 Actinidia chinensis HOM05D002380 ORTHO05D008286 1.2e-19 102.4 123 48.8
LjContig00564g0015808 Lotus japonicus HOM05D002380 ORTHO05D008286 1.0e-18 99.4 62 66.1
Actinidia09729 Actinidia chinensis HOM05D002380 ORTHO05D026288 9.7e-17 92.8 80 62.5
Gohir.A07G186850 Gossypium hirsutum HOM05D002380 ORTHO05D026288 1.1e-15 89.4 66 68.2
CBR_g8454 Chara braunii HOM05D002380 ORTHO05D008286 3.1e-15 87.8 92 42.4
SEGI_40123 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 1.1e-12 79.3 42 83.3
CAN.G96.10 Capsicum annuum HOM05D002380 ORTHO05D026288 1.1e-09 69.3 45 77.8
Lalb_Chr04g0249911 Lupinus albus HOM05D002380 ORTHO05D026288 2.0e-09 68.6 53 66.0
Lj1P772T14 Lonicera japonica HOM05D002380 ORTHO05D008286 1.3e-08 65.9 83 48.2


User provided reference genes

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