Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g100250.3 Solanum lycopersicum HOM05D005591 ORTHO05D007131 2.4e-201 705.3 362 100.0
PGSC0003DMG402024734 Solanum tuberosum HOM05D005591 ORTHO05D007131 1.6e-192 676.0 363 96.7
CAN.G1648.2 Capsicum annuum HOM05D005591 ORTHO05D007131 6.5e-186 654.1 362 92.3
Nitab4.5_0006072g0030 Nicotiana tabacum HOM05D005591 ORTHO05D007131 1.5e-179 632.9 362 90.9
Sopen01g043760 Solanum pennellii HOM05D005591 ORTHO05D007131 4.2e-177 624.8 326 98.5
Nitab4.5_0000368g0340 Nicotiana tabacum HOM05D005591 ORTHO05D007131 1.8e-175 619.4 347 91.9
Peaxi162Scf00673g00002 Petunia axillaris HOM05D005591 ORTHO05D007131 1.8e-167 592.8 347 88.8
CAN.G1273.6 Capsicum annuum HOM05D005591 ORTHO05D007131 1.5e-166 589.7 361 83.7
MSTRG.18314 Avicennia marina HOM05D005591 ORTHO05D007131 3.2e-145 518.8 362 76.8
Dinv27163 Davidia involucrata HOM05D005591 ORTHO05D007131 1.0e-143 513.8 367 74.9
TWI34G1086 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 1.4e-143 513.5 362 73.5
CiPaw.01G109900 Carya illinoinensis HOM05D005591 ORTHO05D007131 4.0e-143 511.9 362 74.6
CSS0046220 Camellia sinensis var. sinensis HOM05D005591 ORTHO05D007131 2.0e-142 509.6 365 74.2
Ciclev10020911m.g Citrus clementina HOM05D005591 ORTHO05D007131 2.6e-142 509.2 362 74.6
SalBow4G1598 Salvia bowleyana HOM05D005591 ORTHO05D007131 2.2e-141 506.1 362 75.1
TWI60G1035 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 8.3e-141 504.2 362 72.7
Duzib212G0264 Durio zibethinus HOM05D005591 ORTHO05D007131 1.1e-140 503.8 362 74.6
SalBow4G1474 Salvia bowleyana HOM05D005591 ORTHO05D007131 1.4e-140 503.4 362 75.1
Potri.002G234400 Populus trichocarpa HOM05D005591 ORTHO05D007131 1.8e-140 503.1 364 73.6
Gorai.011G147400 Gossypium raimondii HOM05D005591 ORTHO05D007131 5.4e-140 501.5 362 74.3
arahy.Tifrunner.gnm1.ann1.ZABD6C Arachis hypogaea HOM05D005591 ORTHO05D007131 2.7e-139 499.2 339 77.0
QL05p063015 Quercus lobata HOM05D005591 ORTHO05D007131 4.5e-139 498.4 361 74.2
Actinidia35920 Actinidia chinensis HOM05D005591 ORTHO05D007131 5.9e-139 498.0 362 72.9
Ca_26812_v3 Cicer arietinum L. HOM05D005591 ORTHO05D007131 7.7e-139 497.7 362 72.9
Hma1.2p1_0349F.1_g132330 Hydrangea macrophylla HOM05D005591 ORTHO05D007131 1.0e-138 497.3 364 73.6
TAR375G0642 Trochodendron aralioides HOM05D005591 ORTHO05D007131 1.3e-138 496.9 362 73.2
VMungo0720G0134 Vigna mungo HOM05D005591 ORTHO05D007131 1.1e-137 493.8 365 72.9
Sabra02G0178800 Salix brachista HOM05D005591 ORTHO05D007131 3.2e-137 492.3 337 76.9
PGR083G2576 Punica granatum HOM05D005591 ORTHO05D007131 4.2e-137 491.9 359 73.5
Phvul.008G142801 Phaseolus vulgaris HOM05D005591 ORTHO05D007131 5.5e-137 491.5 364 72.0
Psat5g221840 Pisum sativum HOM05D005591 ORTHO05D007131 1.2e-136 490.3 363 71.1
arahy.Tifrunner.gnm1.ann1.8VB164 Arachis hypogaea HOM05D005591 ORTHO05D007131 1.6e-136 490.0 307 81.8
Thecc.04G188000 Theobroma cacao HOM05D005591 ORTHO05D007131 4.7e-136 488.4 328 78.0
Lj3g0022648 Lotus japonicus HOM05D005591 ORTHO05D007131 1.0e-135 487.3 375 71.5
Glyma.20G208100 Glycine max HOM05D005591 ORTHO05D007131 1.8e-135 486.5 365 72.1
Gorai.006G226400 Gossypium raimondii HOM05D005591 ORTHO05D007131 2.3e-135 486.1 362 71.0
Medtr3g005100 Medicago truncatula HOM05D005591 ORTHO05D007131 5.2e-135 485.0 363 70.8
Glyma.10G181900 Glycine max HOM05D005591 ORTHO05D007131 1.5e-134 483.4 364 71.2
Lj2P1154T29 Lonicera japonica HOM05D005591 ORTHO05D007131 1.5e-134 483.4 318 78.6
TPR.G37202 Trifolium pratense HOM05D005591 ORTHO05D007131 2.6e-134 482.6 364 71.2
Manes.16G070000 Manihot esculenta HOM05D005591 ORTHO05D007131 3.4e-134 482.3 362 71.5
Gohir.D09G202500 Gossypium hirsutum HOM05D005591 ORTHO05D007131 1.3e-133 480.3 362 70.4
Gohir.A10G133200 Gossypium hirsutum HOM05D005591 ORTHO05D007131 1.7e-133 479.9 296 84.5
Gohir.A09G209100 Gossypium hirsutum HOM05D005591 ORTHO05D007131 2.2e-133 479.6 362 71.0
CsaV3_6G003160 Cucumis sativus L. HOM05D005591 ORTHO05D007131 4.9e-133 478.4 363 71.9
ClCG00G002040 Citrullus lanatus HOM05D005591 ORTHO05D007131 6.3e-133 478.0 360 72.8
MELO3C011502.2 Cucumis melo HOM05D005591 ORTHO05D007131 8.3e-133 477.6 368 71.2
TPR.G25529 Trifolium pratense HOM05D005591 ORTHO05D007131 2.4e-132 476.1 363 69.7
THA.LOC104827705 Tarenaya hassleriana HOM05D005591 ORTHO05D007131 3.1e-132 475.7 310 79.0
Lalb_Chr12g0209371 Lupinus albus HOM05D005591 ORTHO05D007131 7.0e-132 474.6 375 69.6
Lalb_Chr12g0205911 Lupinus albus HOM05D005591 ORTHO05D007131 1.2e-131 473.8 366 71.0
ClCG08G003960 Citrullus lanatus HOM05D005591 ORTHO05D007131 1.6e-131 473.4 315 79.0
Cc11_g03530 Coffea canephora HOM05D005591 ORTHO05D007131 2.0e-131 473.0 360 71.1
Nn3g18591 Nelumbo nucifera HOM05D005591 ORTHO05D007131 7.8e-131 471.1 324 77.2
AUR62010234 Chenopodium quinoa HOM05D005591 ORTHO05D007131 1.3e-130 470.3 311 78.1
AUR62013219 Chenopodium quinoa HOM05D005591 ORTHO05D007131 1.3e-130 470.3 314 77.4
EL10Ac9g21576 Beta vulgaris HOM05D005591 ORTHO05D007131 2.3e-130 469.5 313 77.6
Aa31LG7G4330 Aethionema arabicum HOM05D005591 ORTHO05D007131 6.6e-130 468.0 326 74.2
BcaC07g38997 Brassica carinata HOM05D005591 ORTHO05D007131 1.9e-129 466.5 331 72.8
C08p19710 Brassica napus HOM05D005591 ORTHO05D007131 1.9e-129 466.5 331 72.8
CARHR020310 Cardamine hirsuta HOM05D005591 ORTHO05D007131 2.5e-129 466.1 322 74.8
AL1G32520 Arabidopsis lyrata HOM05D005591 ORTHO05D007131 3.3e-129 465.7 321 74.5
AT1G19800 Arabidopsis thaliana HOM05D005591 ORTHO05D007131 4.3e-129 465.3 305 77.7
BolC8t49608H Brassica oleracea HOM05D005591 ORTHO05D007131 4.3e-129 465.3 331 72.5
Carub.0001s1933 Capsella rubella HOM05D005591 ORTHO05D007131 9.5e-129 464.2 328 73.8
Sed0000259 Sechium edule HOM05D005591 ORTHO05D007131 9.5e-129 464.2 359 69.6
Sp1g17610 Schrenkiella parvula HOM05D005591 ORTHO05D007131 3.6e-128 462.2 324 73.8
Aqoxy5G02725 Aquilegia oxysepala HOM05D005591 ORTHO05D007131 4.7e-128 461.8 302 80.1
C05p18230 Brassica napus HOM05D005591 ORTHO05D007131 4.7e-128 461.8 305 77.4
Thhalv10008071m.g Eutrema salsugineum HOM05D005591 ORTHO05D007131 6.1e-128 461.5 314 76.1
BraA06t24698Z Brassica rapa HOM05D005591 ORTHO05D007131 2.3e-127 459.5 306 77.5
A06p15920 Brassica napus HOM05D005591 ORTHO05D007131 3.0e-127 459.1 306 77.5
BolC5t30530H Brassica oleracea HOM05D005591 ORTHO05D007131 3.0e-127 459.1 305 77.4
SGA_v2.0_scaffold90G27691 Striga asiatica HOM05D005591 ORTHO05D007131 4.0e-127 458.8 365 67.9
BcaB03g12900 Brassica carinata HOM05D005591 ORTHO05D007131 5.2e-127 458.4 314 75.8
Oeu061431.3 Olea europaea HOM05D005591 ORTHO05D007131 3.7e-125 452.2 362 68.8
SGA_v2.0_scaffold1G00602 Striga asiatica HOM05D005591 ORTHO05D002031 8.3e-125 451.1 365 66.6
MBI07_g20439_MAGBIO Magnolia biondii HOM05D005591 ORTHO05D007131 5.4e-124 448.4 298 77.5
Haze_12970 Corylus avellana HOM05D005591 ORTHO05D007131 1.6e-123 446.8 364 68.1
Eucgr.E02433 Eucalyptus grandis HOM05D005591 ORTHO05D007131 2.7e-123 446.0 360 67.2
GSVIVG01031642001 Vitis vinifera HOM05D005591 ORTHO05D007131 2.7e-123 446.0 362 67.4
Lsat_1_v5_gn_1_5881 Lactuca sativa HOM05D005591 ORTHO05D007131 1.3e-122 443.7 258 88.0
ATR0681G262 Amborella trichopoda HOM05D005591 ORTHO05D007131 3.9e-122 442.2 305 75.4
Atru.chr7.136 Acer truncatum HOM05D005591 ORTHO05D007131 8.6e-122 441.0 362 66.6
COL.COLO4_08690 Corchorus olitorius HOM05D005591 ORTHO05D007131 8.6e-122 441.0 319 74.3
Cfa014468 Carpinus fangiana HOM05D005591 ORTHO05D007131 1.1e-121 440.7 305 77.0
Gohir.D10G133600 Gossypium hirsutum HOM05D005591 ORTHO05D007131 1.9e-121 439.9 362 67.4
Haze_05998 Corylus avellana HOM05D005591 ORTHO05D007131 1.2e-120 437.2 305 76.1
SHI22008 Sapria himalayana HOM05D005591 ORTHO05D007131 1.2e-120 437.2 257 86.4
Sc08g0001750 Simmondsia chinensis HOM05D005591 ORTHO05D007131 4.7e-120 435.3 364 64.6
FAN16G2920 Fragaria x ananassa HOM05D005591 ORTHO05D007131 3.4e-118 429.1 359 64.6
Duzib151G0749 Durio zibethinus HOM05D005591 ORTHO05D007131 4.4e-118 428.7 242 91.3
FvH4_3g16560 Fragaria vesca HOM05D005591 ORTHO05D007131 9.8e-118 427.6 359 64.3
FAN21G2901 Fragaria x ananassa HOM05D005591 ORTHO05D007131 2.9e-117 426.0 359 64.6
RcHm_v2.0_Chr5g0027591 Rosa chinensis HOM05D005591 ORTHO05D007131 2.9e-117 426.0 359 64.1
FAN11G3688 Fragaria x ananassa HOM05D005591 ORTHO05D007131 4.9e-117 425.2 359 64.1
Hund00109 Selenicereus undatus HOM05D005591 ORTHO05D007131 1.9e-116 423.3 325 68.6
Prupe.4G148300 Prunus persica HOM05D005591 ORTHO05D007131 2.4e-116 422.9 359 62.4
Migut.D00413 Erythranthe guttata HOM05D005591 ORTHO05D007131 4.6e-115 418.7 378 64.3
MD05G1209200 Malus domestica HOM05D005591 ORTHO05D007131 4.6e-115 418.7 358 63.1
SEGI_17332 Sequoiadendron giganteum HOM05D005591 ORTHO05D007131 4.0e-111 405.6 293 71.0
PSO063G3984 Papaver somniferum HOM05D005591 ORTHO05D007131 6.8e-111 404.8 312 69.9
ECA232G4773 Erigeron canadensis HOM05D005591 ORTHO05D007131 8.9e-111 404.4 296 71.6
MD10G1195600 Malus domestica HOM05D005591 ORTHO05D007131 8.9e-111 404.4 358 61.7
CDE02G1973 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 1.2e-110 404.1 313 70.0
HanXRQChr10g0315741 Helianthus annuus HOM05D005591 ORTHO05D007131 2.0e-110 403.3 299 71.2
PSO339G5872 Papaver somniferum HOM05D005591 ORTHO05D007131 2.0e-110 403.3 312 69.6
CANSAT78G0984 Cannabis sativa HOM05D005591 ORTHO05D007131 7.5e-110 401.4 304 68.4
Rhsim02G0070200 Rhododendron simsii HOM05D005591 ORTHO05D007131 1.7e-109 400.2 359 61.8
SMO367G0743 Selaginella moellendorffii HOM05D005591 ORTHO05D007131 7.1e-108 394.8 261 75.1
Mapoly0204s0010 Marchantia polymorpha HOM05D005591 ORTHO05D007131 2.1e-107 393.3 347 61.1
Zm00001eb074560 Zea mays HOM05D005591 ORTHO05D007131 3.9e-106 389.0 263 74.9
Os04g0553000 Oryza sativa ssp. japonica HOM05D005591 ORTHO05D007131 6.6e-106 388.3 260 76.2
FAN25G3010 Fragaria x ananassa HOM05D005591 ORTHO05D007131 1.9e-105 386.7 359 60.7
Pp3c1_16480 Physcomitrium patens HOM05D005591 ORTHO05D007131 9.5e-105 384.4 287 70.0
CBR_g24384 Chara braunii HOM05D005591 ORTHO05D007131 6.8e-103 378.3 296 65.2
BcaB07g31994 Brassica carinata HOM05D005591 ORTHO05D007131 2.6e-102 376.3 305 66.6
Medtr3g008040 Medicago truncatula HOM05D005591 ORTHO05D007131 3.5e-99 365.9 263 74.9
AagrBONN_evm.TU.Sc2ySwM_117.3947 Anthoceros agrestis HOM05D005591 ORTHO05D007131 1.9e-97 360.1 248 75.0
Cre06.g268200 Chlamydomonas reinhardtii HOM05D005591 ORTHO05D007131 1.7e-90 337.0 252 67.5
PRCOL_00005194 Prasinoderma coloniale HOM05D005591 ORTHO05D007131 3.1e-87 326.2 252 65.5
HPP92_028331 Vanilla planifolia HOM05D005591 ORTHO05D007131 3.4e-86 322.8 254 68.1
Cpa.g.sc8.310 Carica papaya HOM05D005591 ORTHO05D007131 6.4e-85 318.5 177 95.5
vmacro15598 Vaccinium macrocarpon HOM05D005591 ORTHO05D007131 4.6e-75 285.8 305 57.7
MCO01G348 Micromonas commoda HOM05D005591 ORTHO05D007131 7.9e-75 285.0 249 59.4
CDE11G0925 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 1.8e-71 273.9 191 78.5
unitig_22.g5460 Utricularia gibba HOM05D005591 ORTHO05D007131 2.6e-70 270.0 201 70.1
CBR_g4088 Chara braunii HOM05D005591 ORTHO05D007131 3.2e-52 209.9 157 68.2
unitig_22.g5461 Utricularia gibba HOM05D005591 ORTHO05D007131 1.7e-45 187.6 103 92.2
CBR_g4089 Chara braunii HOM05D005591 ORTHO05D007131 5.5e-44 182.6 118 72.9
DCAR_018469 Daucus carota HOM05D005591 ORTHO05D007131 2.2e-37 160.6 103 80.6
DCAR_018470 Daucus carota HOM05D005591 ORTHO05D007131 2.2e-37 160.6 103 80.6
BraA08t34904Z Brassica rapa HOM05D005591 ORTHO05D011946 1.7e-32 144.4 110 63.6
Actinidia29179 Actinidia chinensis HOM05D005591 ORTHO05D007131 7.5e-25 119.0 232 39.7
BcaC05g25857 Brassica carinata HOM05D005591 ORTHO05D007131 1.0e-21 108.6 63 85.7
Ca_28569_v3 Cicer arietinum L. HOM05D005591 ORTHO05D149412 1.2e-19 101.7 191 33.0
Cc01_g18470 Coffea canephora HOM05D005591 ORTHO05D007131 4.3e-12 76.6 43 81.4


User provided reference genes

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