Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 0.0e+00 2054.3 970 100.0
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 0.0e+00 2031.1 970 98.7
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 0.0e+00 2000.3 970 97.2
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 0.0e+00 1891.7 969 91.7
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 0.0e+00 1872.1 968 90.2
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 0.0e+00 1770.7 954 88.6
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 0.0e+00 1644.0 968 78.9
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1643.6 973 78.3
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 0.0e+00 1638.6 955 79.7
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 0.0e+00 1624.8 974 78.9
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1620.1 969 77.9
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1619.0 969 77.7
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 0.0e+00 1617.1 969 76.8
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 0.0e+00 1614.4 972 77.2
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 0.0e+00 1614.4 969 76.6
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 0.0e+00 1612.8 973 76.9
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 0.0e+00 1611.3 971 77.2
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1609.3 971 76.5
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 0.0e+00 1608.6 971 77.1
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 0.0e+00 1607.8 968 76.5
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 0.0e+00 1605.5 970 76.6
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1605.1 971 76.9
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1600.9 973 77.3
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 0.0e+00 1600.1 972 76.3
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 0.0e+00 1596.6 970 76.5
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 0.0e+00 1596.3 973 76.9
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 0.0e+00 1593.2 987 75.6
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1592.4 973 76.8
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 0.0e+00 1592.0 973 76.4
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1590.1 973 75.6
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1584.3 973 76.4
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1578.9 978 75.4
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1575.5 969 74.8
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 0.0e+00 1574.7 975 76.0
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1574.7 979 74.7
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 0.0e+00 1573.9 969 74.6
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1570.4 971 75.8
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 0.0e+00 1568.1 974 74.8
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 0.0e+00 1565.8 971 75.2
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 0.0e+00 1562.7 972 74.6
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1558.1 965 75.4
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1556.2 971 73.5
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1554.3 971 74.2
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 0.0e+00 1554.3 971 74.8
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1552.7 966 74.8
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 0.0e+00 1552.7 980 74.3
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1552.0 967 74.3
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1549.6 966 74.1
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1549.6 971 73.7
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1548.5 969 74.6
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1543.5 962 74.0
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1542.3 974 73.8
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1541.2 971 73.5
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1540.0 963 73.9
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1540.0 967 74.1
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1538.9 973 73.4
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 0.0e+00 1537.3 972 74.1
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 0.0e+00 1536.9 966 73.5
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1536.5 969 75.2
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 0.0e+00 1535.8 969 73.9
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1535.0 973 73.0
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 0.0e+00 1533.9 944 75.7
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1533.5 966 73.6
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1532.7 976 72.8
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1531.2 987 71.5
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1531.2 974 73.6
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 0.0e+00 1530.8 970 72.6
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1525.4 968 73.3
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1525.0 978 73.5
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 0.0e+00 1524.6 971 73.1
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1524.6 962 73.1
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1523.8 961 73.6
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1521.9 971 73.3
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 0.0e+00 1521.9 969 74.0
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1521.1 971 72.4
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1520.8 963 73.5
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1520.0 977 73.1
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1516.1 982 71.4
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1514.2 951 74.2
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1513.8 978 71.7
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 0.0e+00 1512.3 976 73.0
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1512.3 976 72.5
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1510.0 970 72.3
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 0.0e+00 1507.7 975 72.0
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1501.5 974 72.2
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1500.7 978 71.4
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1493.0 891 78.0
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1491.1 925 74.9
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1482.2 968 72.1
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1477.6 970 71.6
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 0.0e+00 1477.2 969 71.5
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1464.5 965 69.9
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 0.0e+00 1457.6 978 70.0
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 0.0e+00 1454.9 974 70.1
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 0.0e+00 1442.9 964 69.7
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 0.0e+00 1437.9 999 70.1
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 0.0e+00 1433.3 970 70.1
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1425.6 971 69.5
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 0.0e+00 1422.9 971 69.4
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1421.8 972 69.7
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1421.8 972 69.7
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 0.0e+00 1421.4 979 68.7
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1420.6 986 68.5
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 0.0e+00 1417.1 974 68.6
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 0.0e+00 1415.2 971 69.0
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 0.0e+00 1414.8 974 68.8
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1414.4 880 75.2
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 0.0e+00 1411.4 971 68.6
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1395.2 968 67.9
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1391.7 969 68.9
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1391.3 968 67.7
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1383.6 851 76.1
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1379.0 968 67.4
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1378.2 854 75.4
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1374.4 968 67.3
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 0.0e+00 1372.1 974 66.8
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 0.0e+00 1371.7 971 67.8
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 0.0e+00 1369.0 1000 65.2
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1328.2 762 78.6
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1303.1 969 64.6
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1300.0 972 65.7
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1284.2 975 64.9
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1240.7 787 73.7
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1235.3 849 68.7
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1227.6 770 75.5
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1200.3 788 70.9
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 0.0e+00 1189.9 780 71.9
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 0.0e+00 1094.3 976 55.5
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 0.0e+00 1094.3 561 91.6
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 8.3e-305 1050.4 963 54.3
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 5.0e-302 1041.2 681 70.9
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 5.8e-290 1001.1 717 68.2
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 1.8e-283 979.5 971 52.2
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 7.3e-269 931.0 972 50.2
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 3.1e-267 925.6 961 49.6
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 3.1e-235 819.3 838 50.2
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 1.6e-231 807.0 403 91.6
CAN.G623.33 Capsicum annuum HOM05D004082 ORTHO05D004729 2.3e-153 547.4 373 75.9
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 4.8e-135 486.5 279 78.9
Atru.chr1.88 Acer truncatum HOM05D004082 ORTHO05D004729 4.5e-117 426.8 413 55.0
QL03p006635 Quercus lobata HOM05D004082 ORTHO05D004729 1.8e-113 414.8 343 58.9
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 1.9e-99 368.2 213 77.9
SEGI_31510 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 2.6e-88 331.3 210 70.0
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 5.7e-88 330.1 187 79.1
QL03p006592 Quercus lobata HOM05D004082 ORTHO05D004729 6.5e-84 316.6 275 57.1
SEGI_00836 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 1.3e-76 292.4 159 82.4
Lj9A80G18 Lonicera japonica HOM05D004082 ORTHO05D004729 4.0e-73 280.8 209 65.1
Atru.chr1.89 Acer truncatum HOM05D004082 ORTHO05D004729 1.2e-66 259.2 143 79.0
PRCOL_00002375 Prasinoderma coloniale HOM05D004082 ORTHO05D004729 2.6e-64 251.5 636 30.3
CDE05G2291 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 3.4e-64 251.1 156 71.8
CAN.G22.21 Capsicum annuum HOM05D004082 ORTHO05D004729 4.4e-56 224.2 150 76.7
QL03p006553 Quercus lobata HOM05D004082 ORTHO05D004729 1.9e-51 208.8 376 38.0
Cfa025543 Carpinus fangiana HOM05D004082 ORTHO05D004729 3.0e-44 184.9 780 26.2
arahy.Tifrunner.gnm1.ann1.3W7GTE Arachis hypogaea HOM05D004082 ORTHO05D004729 4.3e-43 181.0 96 82.3
Atru.chr2.403 Acer truncatum HOM05D004082 ORTHO05D004729 4.0e-41 174.5 150 57.3
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 9.9e-40 169.9 86 86.0
SGA_v2.0_scaffold54G19617 Striga asiatica HOM05D004082 ORTHO05D004729 7.3e-35 153.7 149 53.0
Hund21239 Selenicereus undatus HOM05D004082 ORTHO05D004729 1.2e-32 146.4 160 46.9
CDE05G1624 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 1.5e-32 146.0 88 77.3
Lj9A80T26 Lonicera japonica HOM05D004082 ORTHO05D004729 3.2e-30 138.3 93 67.7
ATR0626G076 Amborella trichopoda HOM05D004082 ORTHO05D004729 2.5e-27 128.6 99 62.6
CBR_g49561 Chara braunii HOM05D000019 ORTHO05D000353 4.2e-22 111.3 183 36.6
VMungo1127G1159 Vigna mungo HOM05D004082 ORTHO05D004729 1.5e-19 102.8 184 33.2
CAN.G2092.2 Capsicum annuum HOM05D004082 ORTHO05D004729 3.3e-19 101.7 114 50.0
Cfa024522 Carpinus fangiana HOM05D004082 ORTHO05D004729 8.2e-18 97.1 305 29.8
QL03p073950 Quercus lobata HOM05D004082 ORTHO05D004729 8.2e-18 97.1 120 45.8
SGA_v2.0_scaffold54G19618 Striga asiatica HOM05D004082 ORTHO05D004729 8.2e-18 97.1 127 43.3
Hund20275 Selenicereus undatus HOM05D004082 ORTHO05D004729 1.6e-13 82.8 46 76.1
Solyc12g038840.2 Solanum lycopersicum HOM05D004082 ORTHO05D004729 2.7e-13 82.0 76 56.6
QL03p007034 Quercus lobata HOM05D000125 ORTHO05D000120 4.8e-10 71.2 71 52.1
CSS0034197 Camellia sinensis var. sinensis HOM05D000231 ORTHO05D000132 6.9e-09 67.4 78 46.2
Hma1.2p1_0928F.1_g237760 Hydrangea macrophylla HOM05D004082 ORTHO05D004729 1.2e-08 66.6 43 74.4
SEGI_10811 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 1.4e-06 59.7 46 60.9


User provided reference genes

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