Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 0.0e+00 1077.8 547 100.0
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 1.2e-305 1052.4 562 95.9
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 8.0e-273 943.3 484 97.7
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 2.2e-262 908.7 567 83.6
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 1.7e-259 899.0 554 83.9
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 4.3e-218 761.5 543 70.5
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 9.7e-218 760.4 519 73.0
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 8.2e-217 757.3 492 74.6
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 5.3e-216 754.6 492 75.0
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 6.9e-216 754.2 496 75.8
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 1.5e-215 753.1 539 69.8
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 2.0e-215 752.7 496 74.6
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 6.5e-214 747.7 554 68.6
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 8.5e-214 747.3 557 68.8
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 4.2e-213 745.0 542 69.4
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 5.5e-213 744.6 493 74.4
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 2.1e-212 742.7 515 71.7
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 4.6e-212 741.5 559 73.5
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 4.6e-212 741.5 557 68.4
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 1.0e-211 740.3 557 67.7
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 3.0e-211 738.8 552 69.4
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 8.8e-211 737.3 554 69.7
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 2.0e-210 736.1 492 73.2
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 3.3e-210 735.3 548 68.8
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 4.3e-210 734.9 554 67.5
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 7.4e-210 734.2 563 67.1
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 2.2e-209 732.6 548 67.9
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 1.8e-208 729.6 484 73.8
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 5.3e-208 728.0 560 66.8
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 6.9e-208 727.6 493 72.0
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 9.1e-208 727.2 548 67.5
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 2.0e-207 726.1 552 67.4
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 3.4e-207 725.3 500 72.6
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 6.5e-206 721.1 475 75.6
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 1.4e-205 719.9 547 66.4
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 1.9e-205 719.5 548 66.2
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 3.2e-205 718.8 479 73.3
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 1.2e-204 716.8 529 67.9
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 2.3e-203 712.6 550 66.7
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 2.3e-203 712.6 555 65.2
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 6.7e-203 711.1 547 66.2
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 2.0e-202 709.5 569 66.4
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 4.4e-202 708.4 550 66.0
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 5.7e-202 708.0 545 65.0
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 9.7e-202 707.2 513 69.2
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 1.7e-201 706.4 550 64.4
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 3.7e-201 705.3 512 68.6
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 3.7e-201 705.3 579 63.0
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 4.8e-201 704.9 544 65.1
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 1.4e-200 703.4 562 65.7
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 1.8e-200 703.0 510 69.8
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 2.4e-200 702.6 486 72.0
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 9.1e-200 700.7 473 72.7
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 2.0e-199 699.5 480 69.8
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 2.0e-199 699.5 542 66.6
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 4.5e-199 698.4 545 64.2
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 4.5e-199 698.4 483 71.2
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 1.0e-198 697.2 576 64.1
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 1.3e-198 696.8 554 64.6
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 1.3e-198 696.8 576 64.1
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 2.2e-198 696.0 559 65.3
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 2.2e-198 696.0 498 69.3
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 6.5e-198 694.5 522 67.4
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 1.1e-197 693.7 476 69.7
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 1.1e-197 693.7 476 69.7
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 1.1e-197 693.7 469 71.9
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.9e-197 693.0 548 66.4
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 4.2e-197 691.8 466 72.1
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 4.2e-197 691.8 484 70.9
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 7.2e-197 691.0 548 63.9
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 1.2e-196 690.3 476 69.3
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 1.6e-196 689.9 476 69.3
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 4.7e-196 688.3 473 71.9
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 6.1e-196 688.0 523 67.1
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 1.4e-195 686.8 547 63.1
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 1.8e-195 686.4 475 70.1
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 1.8e-195 686.4 454 76.0
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 1.1e-194 683.7 553 64.7
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 2.6e-194 682.6 569 64.7
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 9.7e-194 680.6 620 59.4
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 9.7e-194 680.6 502 67.1
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 2.8e-193 679.1 554 64.4
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 4.8e-193 678.3 556 62.2
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 1.1e-192 677.2 557 63.7
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.4e-192 676.0 550 64.9
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 3.1e-192 675.6 464 72.4
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 4.1e-192 675.2 585 61.4
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 4.1e-192 675.2 554 63.2
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.2e-191 673.7 548 65.1
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 2.7e-191 672.5 514 67.1
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 2.7e-191 672.5 485 66.4
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 4.5e-191 671.8 550 64.7
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 5.9e-191 671.4 469 70.8
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 2.2e-190 669.5 499 68.1
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.8e-190 668.7 550 64.5
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 2.5e-189 666.0 545 63.5
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 5.5e-189 664.8 545 62.2
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 7.2e-189 664.5 487 68.8
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 1.2e-188 663.7 545 62.2
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 4.7e-188 661.8 477 66.9
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 6.1e-188 661.4 545 62.0
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 4.0e-187 658.7 469 67.4
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 5.2e-187 658.3 497 65.4
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 6.8e-187 657.9 458 69.0
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 2.6e-186 656.0 553 60.8
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 2.7e-183 646.0 461 69.2
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 3.5e-183 645.6 701 52.5
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 5.0e-182 641.7 553 61.7
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 5.5e-181 638.3 489 63.4
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 8.8e-179 630.9 474 67.5
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 1.7e-177 626.7 545 60.0
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 2.3e-174 616.3 543 59.3
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 6.8e-171 604.7 603 55.9
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 5.4e-168 595.1 362 85.1
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 6.6e-166 588.2 465 60.6
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 9.8e-162 574.3 366 77.9
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 6.4e-161 571.6 563 57.9
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 7.3e-157 558.1 363 76.0
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 5.8e-154 548.5 553 53.2
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 1.1e-152 544.3 389 69.2
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 5.1e-150 535.4 496 58.9
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 1.3e-145 520.8 468 54.9
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 3.2e-144 516.2 471 53.5
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 6.0e-143 511.9 471 55.2
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 2.8e-140 503.1 361 69.5
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 4.9e-137 492.3 403 63.8
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.9e-133 480.3 557 49.4
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 8.1e-132 474.9 381 64.6
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 9.3e-128 461.5 324 70.4
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 7.4e-125 451.8 288 76.4
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 4.9e-113 412.5 365 61.9
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 2.3e-110 403.7 483 47.6
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 2.1e-108 397.1 479 46.1
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 6.1e-103 379.0 243 75.3
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 6.1e-103 379.0 305 63.6
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 4.6e-95 352.8 219 79.0
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 5.1e-94 349.4 293 61.8
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 6.7e-94 349.0 223 75.3
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 2.6e-93 347.1 232 71.6
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 7.4e-93 345.5 455 42.6
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 2.2e-92 344.0 306 58.8
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 8.5e-89 332.0 311 58.8
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 9.4e-88 328.6 212 74.5
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 8.8e-86 322.0 317 52.4
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 3.3e-77 293.5 216 64.4
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 6.3e-76 289.3 274 52.9
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 7.7e-74 282.3 470 36.0
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 2.2e-73 280.8 185 75.1
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 4.0e-70 270.0 191 70.7
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 2.0e-66 257.7 457 36.5
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 3.0e-62 243.8 280 51.1
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 1.7e-57 228.0 188 64.4
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 5.2e-54 216.5 139 76.3
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 7.5e-53 212.6 170 62.9
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.4e-51 208.4 283 44.9
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 4.3e-40 170.2 125 63.2
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 1.6e-39 168.3 114 69.3
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 1.7e-36 158.3 124 61.3
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 8.3e-36 156.0 137 54.0
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 9.2e-35 152.5 88 83.0
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 8.1e-31 139.4 97 64.9
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 1.1e-30 139.0 153 49.0
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 1.5e-29 135.2 76 82.9
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 3.4e-29 134.0 80 83.8
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 2.4e-27 127.9 81 70.4
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 3.2e-27 127.5 318 33.6
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 1.3e-25 122.1 160 47.5
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 3.9e-25 120.6 316 31.0
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 1.5e-24 118.6 102 60.8
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 8.1e-23 112.8 77 71.4
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 1.2e-21 109.0 62 80.6
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 5.8e-21 106.7 63 76.2
Zm00001eb115470 Zea mays HOM05D003767 ORTHO05D004507 2.9e-20 104.4 90 62.2
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 4.9e-20 103.6 84 59.5
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 5.4e-19 100.1 64 67.2
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 2.7e-18 97.8 55 81.8
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 6.6e-17 93.2 64 62.5
Glyma.03G240651 Glycine max HOM05D003767 ORTHO05D004507 8.7e-17 92.8 106 45.3
Zm00001eb275300 Zea mays HOM05D003767 ORTHO05D004507 1.9e-16 91.7 80 57.5
VMungo0540G1019 Vigna mungo HOM05D003767 ORTHO05D004507 8.1e-15 86.3 74 47.3
RcHm_v2.0_Chr2g0172951 Rosa chinensis HOM05D003767 ORTHO05D004507 2.4e-11 74.7 51 62.7
SMO304G0024 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 3.2e-11 74.3 162 35.8
RcHm_v2.0_Chr6g0303351 Rosa chinensis HOM05D003767 ORTHO05D004507 2.3e-09 68.2 48 68.8
SMO164G0207 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 4.3e-08 63.9 112 37.5
BcaC01g04986 Brassica carinata HOM05D002285 ORTHO05D004192 5.3e-06 57.0 47 55.3


User provided reference genes

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