Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g098520.3 Solanum lycopersicum HOM05D004017 ORTHO05D004612 2.2e-48 195.3 97 100.0
Sopen01g042070 Solanum pennellii HOM05D004017 ORTHO05D004612 1.1e-18 96.7 73 71.2
Nitab4.5_0001467g0030 Nicotiana tabacum HOM05D004017 ORTHO05D004612 3.8e-16 88.2 93 51.6
Peaxi162Scf00121g02447 Petunia axillaris HOM05D004017 ORTHO05D004612 2.5e-15 85.5 74 52.7
Solyc02g082660.3 Solanum lycopersicum HOM05D004017 ORTHO05D004612 3.0e-13 78.6 92 45.7
Sopen02g027400 Solanum pennellii HOM05D004017 ORTHO05D004612 6.7e-13 77.4 92 44.6
Nitab4.5_0004608g0030 Nicotiana tabacum HOM05D004017 ORTHO05D004612 2.5e-12 75.5 99 42.4
Sed0025898 Sechium edule HOM05D004017 ORTHO05D004612 4.1e-10 68.2 92 39.1
CAN.G1238.14 Capsicum annuum HOM05D004017 ORTHO05D004612 5.3e-10 67.8 111 38.7
TAR628G0231 Trochodendron aralioides HOM05D004017 ORTHO05D004612 9.0e-10 67.0 73 47.9
HanXRQChr14g0442551 Helianthus annuus HOM05D004017 ORTHO05D004612 1.5e-09 66.2 92 37.0
PSO541G0703 Papaver somniferum HOM05D004017 ORTHO05D004612 2.0e-09 65.9 92 40.2
Sc03g0003980 Simmondsia chinensis HOM05D004017 ORTHO05D004612 2.0e-09 65.9 92 42.4
GSVIVG01026635001 Vitis vinifera HOM05D004017 ORTHO05D004612 2.0e-09 65.9 73 46.6
Duzib147G1448 Durio zibethinus HOM05D004017 ORTHO05D004612 2.6e-09 65.5 68 48.5
Glyma.01G158400 Glycine max HOM05D004017 ORTHO05D004612 2.6e-09 65.5 92 39.1
Lj2g0020546 Lotus japonicus HOM05D004017 ORTHO05D004612 2.6e-09 65.5 92 39.1
Thecc.01G005000 Theobroma cacao HOM05D004017 ORTHO05D004612 2.6e-09 65.5 68 48.5
Aqoxy6G01621 Aquilegia oxysepala HOM05D004017 ORTHO05D004612 3.4e-09 65.1 73 50.7
Dinv28321 Davidia involucrata HOM05D004017 ORTHO05D004612 4.5e-09 64.7 66 48.5
CSS0016610 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 7.6e-09 63.9 74 44.6
CSS0031153 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 7.6e-09 63.9 74 44.6
CSS0034748 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 7.6e-09 63.9 74 44.6
Actinidia22894 Actinidia chinensis HOM05D004017 ORTHO05D004612 1.3e-08 63.2 92 37.0
Ca_24985_v3 Cicer arietinum L. HOM05D004017 ORTHO05D004612 1.3e-08 63.2 73 46.6
ECA238G2486 Erigeron canadensis HOM05D004017 ORTHO05D004612 1.3e-08 63.2 92 37.0
CSS0022647 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 1.7e-08 62.8 74 44.6
CsaV3_3G000200 Cucumis sativus L. HOM05D004017 ORTHO05D004612 1.7e-08 62.8 73 45.2
Migut.L00851 Erythranthe guttata HOM05D004017 ORTHO05D004612 1.7e-08 62.8 92 35.9
Hma1.2p1_0300F.1_g117960 Hydrangea macrophylla HOM05D004017 ORTHO05D004612 1.7e-08 62.8 70 47.1
TWI09G1144 Tripterygium wilfordii HOM05D004017 ORTHO05D004612 1.7e-08 62.8 92 38.0
Atru.chr3.129 Acer truncatum HOM05D004017 ORTHO05D004612 2.9e-08 62.0 94 36.2
CSS0019676 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 2.9e-08 62.0 64 48.4
Lsat_1_v5_gn_5_57160 Lactuca sativa HOM05D004017 ORTHO05D004612 2.9e-08 62.0 56 46.4
Gorai.003G002000 Gossypium raimondii HOM05D004017 ORTHO05D004612 3.8e-08 61.6 70 47.1
Phvul.002G116900 Phaseolus vulgaris HOM05D004017 ORTHO05D004612 3.8e-08 61.6 91 40.7
PGR142G4352 Punica granatum HOM05D004017 ORTHO05D004612 3.8e-08 61.6 92 37.0
VMungo1215G1547 Vigna mungo HOM05D004017 ORTHO05D004612 5.0e-08 61.2 91 40.7
MELO3C013715.2 Cucumis melo HOM05D004017 ORTHO05D004612 6.5e-08 60.8 70 45.7
Migut.L00849 Erythranthe guttata HOM05D004017 ORTHO05D004612 6.5e-08 60.8 72 43.1
Lsat_1_v5_gn_2_73681 Lactuca sativa HOM05D004017 ORTHO05D004612 6.5e-08 60.8 92 34.8
Ciclev10024702m.g Citrus clementina HOM05D004017 ORTHO05D004612 1.1e-07 60.1 92 35.9
COL.COLO4_22554 Corchorus olitorius HOM05D004017 ORTHO05D004612 1.1e-07 60.1 68 45.6
Gohir.A02G178100 Gossypium hirsutum HOM05D004017 ORTHO05D004612 1.1e-07 60.1 70 45.7
MD02G1114700 Malus domestica HOM05D004017 ORTHO05D004612 1.1e-07 60.1 94 36.2
THA.LOC104819715 Tarenaya hassleriana HOM05D004017 ORTHO05D004612 1.1e-07 60.1 92 33.7
Medtr5g024250 Medicago truncatula HOM05D004017 ORTHO05D004612 2.5e-07 58.9 73 42.5
TPR.G33889 Trifolium pratense HOM05D004017 ORTHO05D004612 2.5e-07 58.9 68 42.6
FAN23G1226 Fragaria x ananassa HOM05D004017 ORTHO05D004612 3.2e-07 58.5 93 41.9
Lalb_Chr16g0380061 Lupinus albus HOM05D004017 ORTHO05D004612 3.2e-07 58.5 73 41.1
Rhsim10G0195200 Rhododendron simsii HOM05D004017 ORTHO05D004612 3.2e-07 58.5 92 33.7
Aa31LG6G12480 Aethionema arabicum HOM05D004017 ORTHO05D004612 5.5e-07 57.8 70 42.9
CiPaw.07G002300 Carya illinoinensis HOM05D004017 ORTHO05D004612 5.5e-07 57.8 70 45.7
CANSAT25G1082 Cannabis sativa HOM05D004017 ORTHO05D004612 9.3e-07 57.0 73 41.1
FAN28G2227 Fragaria x ananassa HOM05D004017 ORTHO05D004612 9.3e-07 57.0 75 42.7
Nn6g31689 Nelumbo nucifera HOM05D004017 ORTHO05D004612 9.3e-07 57.0 92 38.0
Potri.005G101900 Populus trichocarpa HOM05D004017 ORTHO05D004612 9.3e-07 57.0 68 42.6
Cpa.g.sc6.367 Carica papaya HOM05D004017 ORTHO05D004612 1.2e-06 56.6 64 46.9
Cc07_g11910 Coffea canephora HOM05D004017 ORTHO05D004612 1.2e-06 56.6 70 41.4
DCAR_016694 Daucus carota HOM05D004017 ORTHO05D004612 1.2e-06 56.6 93 39.8
MD15G1230600 Malus domestica HOM05D004017 ORTHO05D004612 1.6e-06 56.2 94 34.0
Manes.02G114300 Manihot esculenta HOM05D004017 ORTHO05D004612 2.1e-06 55.8 92 35.9
Psat2g148040 Pisum sativum HOM05D004017 ORTHO05D004612 2.1e-06 55.8 73 42.5
Prupe.7G183500 Prunus persica HOM05D004017 ORTHO05D004612 2.1e-06 55.8 111 32.4
RcHm_v2.0_Chr2g0097091 Rosa chinensis HOM05D004017 ORTHO05D004612 2.1e-06 55.8 75 42.7
Gohir.D03G001700 Gossypium hirsutum HOM05D004017 ORTHO05D004612 2.7e-06 55.5 70 44.3
Carub.0007s0480 Capsella rubella HOM05D004017 ORTHO05D004612 3.6e-06 55.1 89 37.1
Sabra05G0084300 Salix brachista HOM05D004017 ORTHO05D004612 3.6e-06 55.1 68 41.2
C07p61210 Brassica napus HOM05D004017 ORTHO05D004612 4.6e-06 54.7 89 37.1
BolC7t46547H Brassica oleracea HOM05D004017 ORTHO05D004612 4.6e-06 54.7 89 37.1
AUR62002051 Chenopodium quinoa HOM05D004017 ORTHO05D004612 4.6e-06 54.7 91 38.5
FvH4_1g10270 Fragaria vesca HOM05D004017 ORTHO05D004612 4.6e-06 54.7 75 42.7
FAN19G1215 Fragaria x ananassa HOM05D004017 ORTHO05D004612 4.6e-06 54.7 75 42.7
FAN26G0543 Fragaria x ananassa HOM05D004017 ORTHO05D004612 4.6e-06 54.7 75 42.7
SGA_v2.0_scaffold61G21182 Striga asiatica HOM05D004017 ORTHO05D004612 4.6e-06 54.7 73 41.1
A03p63640 Brassica napus HOM05D004017 ORTHO05D004612 6.1e-06 54.3 89 37.1
BraA03t15435Z Brassica rapa HOM05D004017 ORTHO05D004612 6.1e-06 54.3 89 37.1
ATR0807G175 Amborella trichopoda HOM05D004017 ORTHO05D004612 7.9e-06 53.9 83 36.1
AL7G15650 Arabidopsis lyrata HOM05D004017 ORTHO05D004612 7.9e-06 53.9 111 30.6


User provided reference genes

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